RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 BCL2P10415 239 aa12.58□□□□□ -0.4
COL7A1-205ENST00000465238 DAD1P61803 113 aa12.58□□□□□ -0.4
COL7A1-205ENST00000465238 VAX2Q9UIW0 290 aa12.58□□□□□ -0.4
COL7A1-205ENST00000465238 HERC2O95714 4834 aa12.58□□□□□ -0.4
COL7A1-205ENST00000465238 DEFB130BP0DP73 79 aa12.57□□□□□ -0.4
COL7A1-205ENST00000465238 DEFB130AP0DP74 79 aa12.57□□□□□ -0.4
COL7A1-205ENST00000465238 ZNF80P51504 273 aaPredicted RBP12.57□□□□□ -0.4
COL7A1-205ENST00000465238 MEF2BQ02080 365 aaPredicted RBP12.57□□□□□ -0.4
COL7A1-205ENST00000465238 TEX261Q6UWH6 196 aa12.57□□□□□ -0.4
COL7A1-205ENST00000465238 GSN-AS1Q9NRJ2 163 aa12.57□□□□□ -0.4
COL7A1-205ENST00000465238 TP53TG3Q9ULZ0 132 aa12.57□□□□□ -0.4
COL7A1-205ENST00000465238 TRGV11A0A075B6L2 103 aa12.56□□□□□ -0.4
COL7A1-205ENST00000465238 PDE6DO43924 150 aa12.56□□□□□ -0.4
COL7A1-205ENST00000465238 PFN1P07737 140 aaKnown RBP12.56□□□□□ -0.4
COL7A1-205ENST00000465238 IBA57Q5T440 356 aaKnown RBP12.56□□□□□ -0.4
COL7A1-205ENST00000465238 LYPD6BQ8NI32 183 aa12.56□□□□□ -0.4
COL7A1-205ENST00000465238 KCNS1Q96KK3 526 aa12.56□□□□□ -0.4
COL7A1-205ENST00000465238 FABP5P3A8MUU1 101 aa12.55□□□□□ -0.4
COL7A1-205ENST00000465238 LTAP01374 205 aa12.55□□□□□ -0.4
COL7A1-205ENST00000465238 ZNF415Q09FC8 603 aa12.55□□□□□ -0.4
COL7A1-205ENST00000465238 DAZ2Q13117 558 aaKnown RBP12.55□□□□□ -0.4
COL7A1-205ENST00000465238 TDRG1Q3Y452 100 aa12.55□□□□□ -0.4
COL7A1-205ENST00000465238 TMEM183AQ8IXX5 376 aa12.55□□□□□ -0.4
COL7A1-205ENST00000465238 C11orf72Q8NBR9 251 aa12.55□□□□□ -0.4
COL7A1-205ENST00000465238 NDUFAF3Q9BU61 184 aa12.55□□□□□ -0.4
COL7A1-205ENST00000465238 SDF2L1Q9HCN8 221 aa12.55□□□□□ -0.4
COL7A1-205ENST00000465238 P0DMU3 169 aa12.54□□□□□ -0.4
COL7A1-205ENST00000465238 FAM231AP0DMU4 169 aa12.54□□□□□ -0.4
COL7A1-205ENST00000465238 FAM231CP0DMU5 169 aa12.54□□□□□ -0.4
COL7A1-205ENST00000465238 TCL1AP56279 114 aa12.54□□□□□ -0.4
COL7A1-205ENST00000465238 BAGE2Q86Y30 109 aa12.54□□□□□ -0.4
COL7A1-205ENST00000465238 C11orf52Q96A22 123 aa12.54□□□□□ -0.4
COL7A1-205ENST00000465238 MED9Q9NWA0 146 aa12.54□□□□□ -0.4
COL7A1-205ENST00000465238 RBFOX3A6NFN3 312 aa12.53□□□□□ -0.4
COL7A1-205ENST00000465238 GNRH2O43555 120 aa12.53□□□□□ -0.4
COL7A1-205ENST00000465238 RPL35P42766 123 aaKnown RBP12.53□□□□□ -0.4
COL7A1-205ENST00000465238 LINC00336Q6ZUF6 198 aa12.53□□□□□ -0.4
COL7A1-205ENST00000465238 ZC2HC1AQ96GY0 325 aa12.53□□□□□ -0.4
COL7A1-205ENST00000465238 MDFICQ9P1T7 246 aa12.53□□□□□ -0.4
COL7A1-205ENST00000465238 HTN3P15516 51 aa12.52□□□□□ -0.41
COL7A1-205ENST00000465238 COX8CQ7Z4L0 72 aa12.52□□□□□ -0.41
COL7A1-205ENST00000465238 POM121L12Q8N7R1 296 aa12.52□□□□□ -0.41
COL7A1-205ENST00000465238 C11orf21Q9P2W6 132 aa12.52□□□□□ -0.41
COL7A1-205ENST00000465238 TRGV1A0A0A0MS02 117 aa12.51□□□□□ -0.41
COL7A1-205ENST00000465238 GAGE12BA1L429 117 aa12.51□□□□□ -0.41
COL7A1-205ENST00000465238 GAGE7O76087 117 aa12.51□□□□□ -0.41
COL7A1-205ENST00000465238 TYMSP04818 313 aa12.51□□□□□ -0.41
COL7A1-205ENST00000465238 GAGE12FP0CL80 117 aa12.51□□□□□ -0.41
COL7A1-205ENST00000465238 GAGE12GP0CL81 117 aa12.51□□□□□ -0.41
COL7A1-205ENST00000465238 GAGE12IP0CL82 117 aa12.51□□□□□ -0.41
COL7A1-205ENST00000465238 FAM162BQ5T6X4 162 aa12.51□□□□□ -0.41
COL7A1-205ENST00000465238 NHLRC2Q8NBF2 726 aa12.51□□□□□ -0.41
COL7A1-205ENST00000465238 DERL1Q9BUN8 251 aa12.51□□□□□ -0.41
COL7A1-205ENST00000465238 SH2D1AO60880 128 aa12.5□□□□□ -0.41
COL7A1-205ENST00000465238 ORM1P02763 201 aa12.5□□□□□ -0.41
COL7A1-205ENST00000465238 ATP5G1P05496 136 aa12.5□□□□□ -0.41
COL7A1-205ENST00000465238 ZNF506Q5JVG8 444 aa12.5□□□□□ -0.41
COL7A1-205ENST00000465238 Q6ZTI0 123 aa12.5□□□□□ -0.41
COL7A1-205ENST00000465238 LINC00612Q8N6U2 182 aa12.5□□□□□ -0.41
COL7A1-205ENST00000465238 FAM210BQ96KR6 192 aa12.5□□□□□ -0.41
COL7A1-205ENST00000465238 SPXQ9BT56 116 aa12.5□□□□□ -0.41
COL7A1-205ENST00000465238 KRTAP17-1Q9BYP8 105 aa12.5□□□□□ -0.41
COL7A1-205ENST00000465238 EIF5A2Q9GZV4 153 aaKnown RBP12.5□□□□□ -0.41
COL7A1-205ENST00000465238 IGHV3-16A0A0C4DH30 117 aa12.49□□□□□ -0.41
COL7A1-205ENST00000465238 SPINK4O60575 86 aa12.49□□□□□ -0.41
COL7A1-205ENST00000465238 CRIP1P50238 77 aa12.49□□□□□ -0.41
COL7A1-205ENST00000465238 PCNPQ8WW12 178 aaKnown RBP12.49□□□□□ -0.41
COL7A1-205ENST00000465238 DNAH17Q9UFH2 4485 aa12.48□□□□□ -0.41
COL7A1-205ENST00000465238 DNAH2Q9P225 4427 aa12.48□□□□□ -0.41
COL7A1-205ENST00000465238 FAT2Q9NYQ8 4349 aa12.48□□□□□ -0.41
COL7A1-205ENST00000465238 TRGV2A0A075B6R0 118 aa12.48□□□□□ -0.41
COL7A1-205ENST00000465238 RAB19A4D1S5 217 aa12.48□□□□□ -0.41
COL7A1-205ENST00000465238 GNG4P50150 75 aa12.48□□□□□ -0.41
COL7A1-205ENST00000465238 ZNF674Q2M3X9 581 aa12.48□□□□□ -0.41
COL7A1-205ENST00000465238 LGALS9BQ3B8N2 356 aa12.48□□□□□ -0.41
COL7A1-205ENST00000465238 CENPWQ5EE01 88 aa12.48□□□□□ -0.41
COL7A1-205ENST00000465238 TOR2AQ5JU69 321 aa12.48□□□□□ -0.41
COL7A1-205ENST00000465238 FAM210AQ96ND0 272 aa12.48□□□□□ -0.41
COL7A1-205ENST00000465238 MLST8Q9BVC4 326 aa12.48□□□□□ -0.41
COL7A1-205ENST00000465238 MRPL16Q9NX20 251 aaKnown RBP12.48□□□□□ -0.41
COL7A1-205ENST00000465238 IGKV3D-20A0A0C4DH25 116 aa12.47□□□□□ -0.41
COL7A1-205ENST00000465238 B4DEV8 164 aa12.47□□□□□ -0.41
COL7A1-205ENST00000465238 F5H768 121 aa12.47□□□□□ -0.41
COL7A1-205ENST00000465238 KIAA1109Q2LD37 5005 aa12.47□□□□□ -0.41
COL7A1-205ENST00000465238 TMEM250H0YL14 139 aa12.46□□□□□ -0.41
COL7A1-205ENST00000465238 M0R036 132 aa12.46□□□□□ -0.41
COL7A1-205ENST00000465238 S100A4P26447 101 aaKnown RBP12.46□□□□□ -0.41
COL7A1-205ENST00000465238 PRR27Q6MZM9 219 aa12.46□□□□□ -0.41
COL7A1-205ENST00000465238 M0R2P5 195 aa12.45□□□□□ -0.42
COL7A1-205ENST00000465238 MGST1P10620 155 aaKnown RBP12.45□□□□□ -0.42
COL7A1-205ENST00000465238 ASIPP42127 132 aa12.45□□□□□ -0.42
COL7A1-205ENST00000465238 RAB14P61106 215 aa12.45□□□□□ -0.42
COL7A1-205ENST00000465238 SMIM12Q96EX1 92 aa12.45□□□□□ -0.42
COL7A1-205ENST00000465238 PKHD1P08F94 4074 aa12.45□□□□□ -0.42
COL7A1-205ENST00000465238 KRBOX1C9JBD0 128 aa12.44□□□□□ -0.42
COL7A1-205ENST00000465238 CEBPGP53567 150 aa12.44□□□□□ -0.42
COL7A1-205ENST00000465238 OR5I1Q13606 314 aa12.44□□□□□ -0.42
COL7A1-205ENST00000465238 LINC01559Q495D7 138 aa12.44□□□□□ -0.42
COL7A1-205ENST00000465238 UBE2DNLQ8IWF7 75 aa12.44□□□□□ -0.42
COL7A1-205ENST00000465238 RASL10AQ92737 203 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms