RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 SIKE1Q9BRV8 207 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 CCDC90BQ9GZT6 254 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 CTDSP1Q9GZU7 261 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 AGPAT4-IT1Q9H0P7 198 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 PARLQ9H300 379 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 AAMDCQ9H7C9 122 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 COMMD3Q9UBI1 195 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 RAB22AQ9UL26 194 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 IGLV4-69A0A075B6H9 119 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 TRBV7-3A0A075B6L6 115 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 TRBV20-1A0A075B6N2 111 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 A0A0A6YYH2 397 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 IGHV1-58A0A0C4DH39 117 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 TRBV7-9A0A0J9YWB2 115 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 TRBV10-1A0A0K0K1A3 114 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 C19orf71A6NCJ1 209 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 C9orf92A6NGG3 77 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 A6NJ64 397 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 CEBPZOSA8MTT3 80 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 A8MWV9 139 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.3□□□□□ -2.2
USP40-211ENST00000464956 GNRH2O43555 120 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 BCE1O60756 84 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 HYPMO75409 117 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 OR5G3P0C626 314 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 CAMPP49913 170 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 GNG2P59768 71 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 S100A10P60903 97 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 UBE2D2P62837 147 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 MEF2BQ02080 365 aaPredicted RBP1.3□□□□□ -2.2
USP40-211ENST00000464956 ZNF266Q14584 549 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 C6orf99Q4VX62 202 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 NMSQ5H8A3 153 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 ACOT7LQ6ZUV0 252 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 PRSS48Q7RTY5 328 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 BPIFA4PQ86YQ2 179 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 Q8N9P0 234 aaPredicted RBP1.3□□□□□ -2.2
USP40-211ENST00000464956 RNASE11Q8TAA1 199 aaKnown RBP1.3□□□□□ -2.2
USP40-211ENST00000464956 ZCCHC13Q8WW36 166 aaKnown RBP1.3□□□□□ -2.2
USP40-211ENST00000464956 PHYHIPQ92561 330 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 IFT46Q9NQC8 304 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 SAR1AQ9NR31 198 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 OR5AC2Q9NZP5 309 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 ZNF492Q9P255 531 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 U3KQ87 197 aa1.3□□□□□ -2.2
USP40-211ENST00000464956 TRBV25-1A0A075B6N4 114 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 METTL21EPA6NDL7 271 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 H3BTX0 84 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 EI24O14681 340 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 EDF1O60869 148 aaKnown RBP1.29□□□□□ -2.2
USP40-211ENST00000464956 TYMSP04818 313 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 MT4P47944 62 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 ETV1P50549 477 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 DAPP51397 102 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 RPL37P61927 97 aaKnown RBP1.29□□□□□ -2.2
USP40-211ENST00000464956 RPS29P62273 56 aaKnown RBP1.29□□□□□ -2.2
USP40-211ENST00000464956 Q6AWC8 147 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 LPCAT3Q6P1A2 487 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 Q6ZVH6 145 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 AHSA2Q719I0 299 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 LHFPL1Q86WI0 220 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 Q8N377 158 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 C3orf22Q8N5N4 141 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 C20orf203Q8NBC4 194 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 Q8NBF4 154 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 NEXN-AS1Q8NBZ9 246 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 OR2D3Q8NGH3 330 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 TMEM170AQ8WVE7 144 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 CHCHD10Q8WYQ3 142 aaPredicted RBP1.29□□□□□ -2.2
USP40-211ENST00000464956 PTH2Q96A98 100 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 FAM3DQ96BQ1 224 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 AQP10Q96PS8 301 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 CAMK2N2Q96S95 79 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 CACFD1Q9UGQ2 172 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 POMPQ9Y244 141 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 PRELID1Q9Y255 219 aa1.29□□□□□ -2.2
USP40-211ENST00000464956 IGKV2-40A0A087WW87 121 aaPredicted RBP1.28□□□□□ -2.2
USP40-211ENST00000464956 FXYD6-FXYD2A0A087WZ82 144 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 IGKV3OR2-268A0A0C4DH90 116 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 A0A1B0GUV1 79 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 PGPEP1LA6NFU8 196 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 M0R3E3 92 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 MRPS12O15235 138 aaKnown RBP1.28□□□□□ -2.2
USP40-211ENST00000464956 IGKV1-5P01602 117 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 IGKV2D-40P01614 121 aaPredicted RBP1.28□□□□□ -2.2
USP40-211ENST00000464956 IL5P05113 134 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 LINC00869P0C866 280 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 HSMCR30P0CW71 290 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 HOXB6P17509 224 aaKnown RBP1.28□□□□□ -2.2
USP40-211ENST00000464956 TAGLN2P37802 199 aaKnown RBP1.28□□□□□ -2.2
USP40-211ENST00000464956 CSN1S1P47710 185 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 UBE2AP49459 152 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 ATP5IP56385 69 aaPredicted RBP1.28□□□□□ -2.2
USP40-211ENST00000464956 KRTAP10-5P60370 271 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 C2orf76Q3KRA6 126 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 LGALSLQ3ZCW2 172 aaPredicted RBP1.28□□□□□ -2.2
USP40-211ENST00000464956 CDNFQ49AH0 187 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 PHLDA2Q53GA4 152 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 FAM74A4Q5TZK3 123 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 LYZL1Q6UWQ5 148 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms