RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CNFNQ9BYD5 112 aa9□□□□□ -0.97
CPSF3-202ENST00000460593 CUL9Q8IWT3 2517 aa8.99□□□□□ -0.97
CPSF3-202ENST00000460593 B5MCH6 92 aa8.99□□□□□ -0.97
CPSF3-202ENST00000460593 M0R381 172 aa8.99□□□□□ -0.97
CPSF3-202ENST00000460593 PRTN3P24158 256 aa8.99□□□□□ -0.97
CPSF3-202ENST00000460593 PLNP26678 52 aa8.99□□□□□ -0.97
CPSF3-202ENST00000460593 ANAPC13Q9BS18 74 aa8.99□□□□□ -0.97
CPSF3-202ENST00000460593 AGPAT4-IT1Q9H0P7 198 aa8.99□□□□□ -0.97
CPSF3-202ENST00000460593 IGHV7-4-1A0A0J9YVY3 117 aa8.99□□□□□ -0.97
CPSF3-202ENST00000460593 H7C2G1 150 aa8.99□□□□□ -0.97
CPSF3-202ENST00000460593 NBR2O15453 112 aa8.99□□□□□ -0.97
CPSF3-202ENST00000460593 Q6ZS46 218 aa8.99□□□□□ -0.97
CPSF3-202ENST00000460593 RALYQ9UKM9 306 aaKnown RBP8.99□□□□□ -0.97
CPSF3-202ENST00000460593 AKAP6Q13023 2319 aa8.98□□□□□ -0.97
CPSF3-202ENST00000460593 CTSGP08311 255 aa8.98□□□□□ -0.97
CPSF3-202ENST00000460593 NUP37Q8NFH4 326 aa8.98□□□□□ -0.97
CPSF3-202ENST00000460593 IGLV11-55A0A075B6I3 123 aa8.98□□□□□ -0.97
CPSF3-202ENST00000460593 LINC01559Q495D7 138 aa8.98□□□□□ -0.97
CPSF3-202ENST00000460593 RASL10AQ92737 203 aa8.98□□□□□ -0.97
CPSF3-202ENST00000460593 HIF1ANQ9NWT6 349 aa8.98□□□□□ -0.97
CPSF3-202ENST00000460593 TRBV20-1A0A075B6N2 111 aa8.98□□□□□ -0.97
CPSF3-202ENST00000460593 CRIP2P52943 208 aaPredicted RBP8.98□□□□□ -0.97
CPSF3-202ENST00000460593 COX8CQ7Z4L0 72 aa8.98□□□□□ -0.97
CPSF3-202ENST00000460593 ANKRD29Q8N6D5 301 aa8.98□□□□□ -0.97
CPSF3-202ENST00000460593 MSRB2Q9Y3D2 182 aa8.98□□□□□ -0.97
CPSF3-202ENST00000460593 RAB1BQ9H0U4 201 aa8.97□□□□□ -0.97
CPSF3-202ENST00000460593 ERG28Q9UKR5 140 aa8.97□□□□□ -0.97
CPSF3-202ENST00000460593 MGPP08493 103 aa8.97□□□□□ -0.97
CPSF3-202ENST00000460593 PRR9Q5T870 116 aa8.97□□□□□ -0.97
CPSF3-202ENST00000460593 IGFL2Q6UWQ7 119 aa8.97□□□□□ -0.97
CPSF3-202ENST00000460593 C14orf178Q8N769 122 aaPredicted RBP8.97□□□□□ -0.97
CPSF3-202ENST00000460593 RAX2Q96IS3 184 aa8.97□□□□□ -0.97
CPSF3-202ENST00000460593 SMIM2Q9BVW6 85 aa8.97□□□□□ -0.97
CPSF3-202ENST00000460593 ZNF883P0CG24 379 aa8.96□□□□□ -0.97
CPSF3-202ENST00000460593 BAALCQ8WXS3 180 aa8.96□□□□□ -0.97
CPSF3-202ENST00000460593 E7EQL1 145 aa8.96□□□□□ -0.98
CPSF3-202ENST00000460593 SCGB1C2P0DMR2 95 aa8.96□□□□□ -0.98
CPSF3-202ENST00000460593 NEXN-AS1Q8NBZ9 246 aa8.96□□□□□ -0.98
CPSF3-202ENST00000460593 AJUBAQ96IF1 538 aa8.96□□□□□ -0.98
CPSF3-202ENST00000460593 A0A0G2JNJ9 132 aa8.96□□□□□ -0.98
CPSF3-202ENST00000460593 PSMG4Q5JS54 123 aa8.96□□□□□ -0.98
CPSF3-202ENST00000460593 ASCL5Q7RTU5 278 aa8.96□□□□□ -0.98
CPSF3-202ENST00000460593 TRPT1Q86TN4 253 aaKnown RBP8.96□□□□□ -0.98
CPSF3-202ENST00000460593 Q9UFV3 132 aa8.96□□□□□ -0.98
CPSF3-202ENST00000460593 C2orf66Q6UXQ4 117 aa8.95□□□□□ -0.98
CPSF3-202ENST00000460593 C1orf122Q6ZSJ8 110 aa8.95□□□□□ -0.98
CPSF3-202ENST00000460593 TEN1Q86WV5 123 aa8.95□□□□□ -0.98
CPSF3-202ENST00000460593 PPDPFLQ8WWR9 84 aa8.95□□□□□ -0.98
CPSF3-202ENST00000460593 SPTA1P02549 2419 aa8.95□□□□□ -0.98
CPSF3-202ENST00000460593 DUSP14O95147 198 aaKnown RBP8.95□□□□□ -0.98
CPSF3-202ENST00000460593 CD7P09564 240 aa8.95□□□□□ -0.98
CPSF3-202ENST00000460593 UBE2D1P51668 147 aa8.95□□□□□ -0.98
CPSF3-202ENST00000460593 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.95□□□□□ -0.98
CPSF3-202ENST00000460593 KAAG1Q9UBP8 84 aa8.95□□□□□ -0.98
CPSF3-202ENST00000460593 CELSR1Q9NYQ6 3014 aa8.95□□□□□ -0.98
CPSF3-202ENST00000460593 LY6LH3BQJ8 138 aa8.94□□□□□ -0.98
CPSF3-202ENST00000460593 CRLF1O75462 422 aa8.94□□□□□ -0.98
CPSF3-202ENST00000460593 TSPEAR-AS2P59090 65 aa8.94□□□□□ -0.98
CPSF3-202ENST00000460593 C5orf64Q2M2E5 130 aa8.94□□□□□ -0.98
CPSF3-202ENST00000460593 NDUFA11Q86Y39 141 aa8.94□□□□□ -0.98
CPSF3-202ENST00000460593 C11orf86A6NJI1 115 aa8.94□□□□□ -0.98
CPSF3-202ENST00000460593 ARL3P36405 182 aa8.94□□□□□ -0.98
CPSF3-202ENST00000460593 UBE2D3P61077 147 aa8.94□□□□□ -0.98
CPSF3-202ENST00000460593 UBE2D2P62837 147 aa8.94□□□□□ -0.98
CPSF3-202ENST00000460593 ECSCRQ19T08 205 aa8.94□□□□□ -0.98
CPSF3-202ENST00000460593 RIF1Q5UIP0 2472 aaKnown RBP8.93□□□□□ -0.98
CPSF3-202ENST00000460593 CLEC3BP05452 202 aa8.93□□□□□ -0.98
CPSF3-202ENST00000460593 NHLRC4P0CG21 123 aaPredicted RBP8.93□□□□□ -0.98
CPSF3-202ENST00000460593 CFC1BP0CG36 223 aa8.93□□□□□ -0.98
CPSF3-202ENST00000460593 CFC1P0CG37 223 aa8.93□□□□□ -0.98
CPSF3-202ENST00000460593 SUMO2P61956 95 aaKnown RBP8.93□□□□□ -0.98
CPSF3-202ENST00000460593 ATP6V0E2Q8NHE4 81 aa8.93□□□□□ -0.98
CPSF3-202ENST00000460593 TTC28Q96AY4 2481 aa8.93□□□□□ -0.98
CPSF3-202ENST00000460593 IGHV3-64A0A075B6Q5 118 aa8.93□□□□□ -0.98
CPSF3-202ENST00000460593 TRAV8-2A0A0B4J237 113 aa8.93□□□□□ -0.98
CPSF3-202ENST00000460593 A8MWV9 139 aa8.93□□□□□ -0.98
CPSF3-202ENST00000460593 ZNF688P0C7X2 276 aa8.93□□□□□ -0.98
CPSF3-202ENST00000460593 COX6B1P14854 86 aa8.93□□□□□ -0.98
CPSF3-202ENST00000460593 ZNF672Q499Z4 452 aaPredicted RBP8.93□□□□□ -0.98
CPSF3-202ENST00000460593 TOMM6Q96B49 74 aa8.93□□□□□ -0.98
CPSF3-202ENST00000460593 TRAV4A0A0B4J268 109 aa8.92□□□□□ -0.98
CPSF3-202ENST00000460593 C9JAW5 83 aa8.92□□□□□ -0.98
CPSF3-202ENST00000460593 ZFAND6Q6FIF0 208 aa8.92□□□□□ -0.98
CPSF3-202ENST00000460593 OR11H6Q8NGC7 330 aa8.92□□□□□ -0.98
CPSF3-202ENST00000460593 TRAV12-1A0A0B4J245 112 aa8.92□□□□□ -0.98
CPSF3-202ENST00000460593 CCDC179H3BU77 68 aa8.92□□□□□ -0.98
CPSF3-202ENST00000460593 CRYGDP07320 174 aa8.92□□□□□ -0.98
CPSF3-202ENST00000460593 RPL39P62891 51 aaKnown RBP8.92□□□□□ -0.98
CPSF3-202ENST00000460593 C15orf32Q32M92 178 aa8.92□□□□□ -0.98
CPSF3-202ENST00000460593 TEX29Q8N6K0 151 aa8.92□□□□□ -0.98
CPSF3-202ENST00000460593 ANKHD1Q8IWZ3 2542 aaKnown RBP8.92□□□□□ -0.98
CPSF3-202ENST00000460593 A0A0J9YY99 117 aa8.91□□□□□ -0.98
CPSF3-202ENST00000460593 A6NJY4 79 aa8.91□□□□□ -0.98
CPSF3-202ENST00000460593 BUB3O43684 328 aa8.91□□□□□ -0.98
CPSF3-202ENST00000460593 ELANEP08246 267 aa8.91□□□□□ -0.98
CPSF3-202ENST00000460593 DEFB124Q8NES8 71 aa8.91□□□□□ -0.98
CPSF3-202ENST00000460593 BEX4Q9NWD9 120 aaPredicted RBP8.91□□□□□ -0.98
CPSF3-202ENST00000460593 DPM3Q9P2X0 92 aa8.91□□□□□ -0.98
CPSF3-202ENST00000460593 IGKV3-7A0A075B6H7 116 aa8.91□□□□□ -0.98
CPSF3-202ENST00000460593 CLEC19AQ6UXS0 136 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms