RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 Q8NAQ8 132 aa8.36□□□□□ -1.07
SCN9A-204ENST00000452182 KCNS1Q96KK3 526 aa8.36□□□□□ -1.07
SCN9A-204ENST00000452182 BIN3Q9NQY0 253 aa8.36□□□□□ -1.07
SCN9A-204ENST00000452182 SOHLH1Q5JUK2 328 aa8.35□□□□□ -1.07
SCN9A-204ENST00000452182 FAM159AQ6UWV7 190 aa8.35□□□□□ -1.07
SCN9A-204ENST00000452182 ZNF493Q6ZR52 646 aa8.35□□□□□ -1.07
SCN9A-204ENST00000452182 OCC1Q8TAD7 63 aa8.35□□□□□ -1.07
SCN9A-204ENST00000452182 TMEM263Q8WUH6 116 aaKnown RBP8.35□□□□□ -1.07
SCN9A-204ENST00000452182 TMEM189A5PLL7 270 aa8.34□□□□□ -1.07
SCN9A-204ENST00000452182 PGPEP1LA6NFU8 196 aa8.34□□□□□ -1.07
SCN9A-204ENST00000452182 ZNF705GA8MUZ8 300 aaPredicted RBP8.34□□□□□ -1.07
SCN9A-204ENST00000452182 SH2D1AO60880 128 aa8.34□□□□□ -1.07
SCN9A-204ENST00000452182 SFTA3P0C7M3 94 aa8.34□□□□□ -1.07
SCN9A-204ENST00000452182 RNASE8Q8TDE3 154 aaKnown RBP8.34□□□□□ -1.07
SCN9A-204ENST00000452182 C16orf74Q96GX8 76 aa8.34□□□□□ -1.07
SCN9A-204ENST00000452182 C11orf68Q9H3H3 251 aaKnown RBP8.34□□□□□ -1.07
SCN9A-204ENST00000452182 C11orf21Q9P2W6 132 aa8.34□□□□□ -1.07
SCN9A-204ENST00000452182 TENM3Q9P273 2699 aa8.34□□□□□ -1.07
SCN9A-204ENST00000452182 IGHV4-28A0A0C4DH34 117 aa8.33□□□□□ -1.08
SCN9A-204ENST00000452182 MGST1P10620 155 aaKnown RBP8.33□□□□□ -1.08
SCN9A-204ENST00000452182 AZU1P20160 251 aa8.33□□□□□ -1.08
SCN9A-204ENST00000452182 TMEM241Q24JQ0 296 aa8.33□□□□□ -1.08
SCN9A-204ENST00000452182 MUC21Q5SSG8 566 aa8.33□□□□□ -1.08
SCN9A-204ENST00000452182 IBA57Q5T440 356 aaKnown RBP8.33□□□□□ -1.08
SCN9A-204ENST00000452182 LINC01551Q86U37 167 aa8.33□□□□□ -1.08
SCN9A-204ENST00000452182 NAT8Q9UHE5 227 aa8.33□□□□□ -1.08
SCN9A-204ENST00000452182 TP53TG3Q9ULZ0 132 aa8.33□□□□□ -1.08
SCN9A-204ENST00000452182 U3KQK5 164 aa8.33□□□□□ -1.08
SCN9A-204ENST00000452182 TRGV11A0A075B6L2 103 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 IGKV3D-20A0A0C4DH25 116 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 C19orf71A6NCJ1 209 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 CBY3A6NI87 242 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 K7EN84 100 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 HTN1P15515 57 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 PRR27Q6MZM9 219 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 SDF2L1Q9HCN8 221 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 NAGKQ9UJ70 344 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 PLAC8L1A1L4L8 177 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 TMEM218A2RU14 115 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 PRM2P04554 102 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 C11orf72Q8NBR9 251 aa8.32□□□□□ -1.08
SCN9A-204ENST00000452182 DAZAP1Q96EP5 407 aaKnown RBP8.32□□□□□ -1.08
SCN9A-204ENST00000452182 KRBOX1C9JBD0 128 aa8.31□□□□□ -1.08
SCN9A-204ENST00000452182 ORM1P02763 201 aa8.31□□□□□ -1.08
SCN9A-204ENST00000452182 TYMSP04818 313 aa8.31□□□□□ -1.08
SCN9A-204ENST00000452182 OR5I1Q13606 314 aa8.31□□□□□ -1.08
SCN9A-204ENST00000452182 DNLZQ5SXM8 178 aa8.31□□□□□ -1.08
SCN9A-204ENST00000452182 FAM231DQ6ZW35 169 aa8.31□□□□□ -1.08
SCN9A-204ENST00000452182 IGHV3-16A0A0C4DH30 117 aa8.3□□□□□ -1.08
SCN9A-204ENST00000452182 A0A0J9YWU9 116 aa8.3□□□□□ -1.08
SCN9A-204ENST00000452182 B4DEV8 164 aa8.3□□□□□ -1.08
SCN9A-204ENST00000452182 GNRH2O43555 120 aa8.3□□□□□ -1.08
SCN9A-204ENST00000452182 P01737 135 aa8.3□□□□□ -1.08
SCN9A-204ENST00000452182 CXCL1P09341 107 aa8.3□□□□□ -1.08
SCN9A-204ENST00000452182 TCL1AP56279 114 aa8.3□□□□□ -1.08
SCN9A-204ENST00000452182 RPL23P62829 140 aaKnown RBP8.3□□□□□ -1.08
SCN9A-204ENST00000452182 ZNF575Q86XF7 245 aa8.3□□□□□ -1.08
SCN9A-204ENST00000452182 IL17DQ8TAD2 202 aa8.3□□□□□ -1.08
SCN9A-204ENST00000452182 EDA2RQ9HAV5 297 aa8.3□□□□□ -1.08
SCN9A-204ENST00000452182 TIMM8BQ9Y5J9 83 aaPredicted RBP8.3□□□□□ -1.08
SCN9A-204ENST00000452182 TEX48A0A1B0GUV7 120 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 SNURFLB1AK76 121 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 M0R036 132 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 ZNF415Q09FC8 603 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 PNRC1Q12796 327 aaPredicted RBP8.29□□□□□ -1.08
SCN9A-204ENST00000452182 DAZ2Q13117 558 aaKnown RBP8.29□□□□□ -1.08
SCN9A-204ENST00000452182 NUDT10Q8NFP7 164 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 ISOC2Q96AB3 205 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 NUDT11Q96G61 164 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 SEC11CQ9BY50 192 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 GSN-AS1Q9NRJ2 163 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 MDFICQ9P1T7 246 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 LYRM9A8MSI8 78 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 DEFB4AO15263 64 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 ADCYAP1P18509 176 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 RPS20P60866 119 aaKnown RBP8.29□□□□□ -1.08
SCN9A-204ENST00000452182 NDUFA5Q16718 116 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 ANKRD39Q53RE8 183 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 SPXQ9BT56 116 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 RNASE7Q9H1E1 156 aaKnown RBP8.29□□□□□ -1.08
SCN9A-204ENST00000452182 OSTCQ9NRP0 149 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 DKK2Q9UBU2 259 aa8.29□□□□□ -1.08
SCN9A-204ENST00000452182 F8W036 122 aa8.28□□□□□ -1.08
SCN9A-204ENST00000452182 SPART-AS1P0CW21 52 aa8.28□□□□□ -1.08
SCN9A-204ENST00000452182 RNASE3P12724 160 aaKnown RBP8.28□□□□□ -1.08
SCN9A-204ENST00000452182 ASIPP42127 132 aa8.28□□□□□ -1.08
SCN9A-204ENST00000452182 EMP1P54849 157 aa8.28□□□□□ -1.08
SCN9A-204ENST00000452182 ERVFC1-1P60608 527 aa8.28□□□□□ -1.08
SCN9A-204ENST00000452182 ADIRFQ15847 76 aa8.28□□□□□ -1.08
SCN9A-204ENST00000452182 C10orf91Q5T1B1 145 aa8.28□□□□□ -1.08
SCN9A-204ENST00000452182 OR2D3Q8NGH3 330 aa8.28□□□□□ -1.08
SCN9A-204ENST00000452182 C9orf85Q96MD7 179 aa8.28□□□□□ -1.08
SCN9A-204ENST00000452182 SSBP4Q9BWG4 385 aaPredicted RBP8.28□□□□□ -1.08
SCN9A-204ENST00000452182 RPP21Q9H633 154 aaKnown RBP8.28□□□□□ -1.08
SCN9A-204ENST00000452182 IL36BQ9NZH7 164 aa8.28□□□□□ -1.08
SCN9A-204ENST00000452182 XKRY2A2RUG3 117 aa8.27□□□□□ -1.09
SCN9A-204ENST00000452182 TGP01266 2768 aa8.27□□□□□ -1.09
SCN9A-204ENST00000452182 MED14OSP0DP75 135 aa8.27□□□□□ -1.09
SCN9A-204ENST00000452182 RPL19P84098 196 aaKnown RBP8.27□□□□□ -1.09
SCN9A-204ENST00000452182 LGALS9BQ3B8N2 356 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms