RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 RPL12P30050 165 aaKnown RBP4.86□□□□□ -1.63
VPS41-208ENST00000448833 SRIP30626 198 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 LINC00315P59091 139 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 FHL2Q14192 279 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 TDRG1Q3Y452 100 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 Q8N1X5 172 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 C10orf126Q8N4M7 172 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 NDFIP1Q9BT67 221 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 MRPL16Q9NX20 251 aaKnown RBP4.86□□□□□ -1.63
VPS41-208ENST00000448833 MBD2Q9UBB5 411 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 HSPB11Q9Y547 144 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 LY96Q9Y6Y9 160 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 DYNC1H1Q14204 4646 aaKnown RBP4.85□□□□□ -1.63
VPS41-208ENST00000448833 TRAV4A0A0B4J268 109 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 PGPA6NDG6 321 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 FBLL1A6NHQ2 334 aaKnown RBP4.85□□□□□ -1.63
VPS41-208ENST00000448833 H0YIZ8 118 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 M0R2P5 195 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 IGHV3-53P01767 116 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 H2BFSP57053 126 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 TMEM183BQ1AE95 376 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 ANKRD39Q53RE8 183 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 MUC21Q5SSG8 566 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 TMEM183AQ8IXX5 376 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 OR4C5Q8NGB2 326 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 PHYHIPLQ96FC7 376 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 HYLS1Q96M11 299 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 C8orf49Q96NF6 230 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 KRTAP1-5Q9BYS1 174 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 DNAH11Q96DT5 4516 aa4.85□□□□□ -1.63
VPS41-208ENST00000448833 K7EQD1 137 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 TAAR5O14804 337 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 MBP02144 154 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 PFN1P07737 140 aaKnown RBP4.84□□□□□ -1.63
VPS41-208ENST00000448833 GYPEP15421 78 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 TIRAPP58753 221 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 PRR9Q5T870 116 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 KRTAP19-1Q8IUB9 90 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 Q8TAT8 98 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 SDF2L1Q9HCN8 221 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 TREM1Q9NP99 234 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 SCRT2Q9NQ03 307 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 MSRB1Q9NZV6 116 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 MDFICQ9P1T7 246 aa4.84□□□□□ -1.63
VPS41-208ENST00000448833 TRAV8-6A0A0B4J262 113 aa4.83□□□□□ -1.64
VPS41-208ENST00000448833 DNAH10OSP0CZ25 163 aa4.83□□□□□ -1.64
VPS41-208ENST00000448833 SERF2P84101 59 aa4.83□□□□□ -1.64
VPS41-208ENST00000448833 C21orf62-AS1Q17RA5 79 aa4.83□□□□□ -1.64
VPS41-208ENST00000448833 ZFP69Q49AA0 526 aa4.83□□□□□ -1.64
VPS41-208ENST00000448833 Q6ZRN7 208 aaPredicted RBP4.83□□□□□ -1.64
VPS41-208ENST00000448833 GOLT1AQ6ZVE7 132 aa4.83□□□□□ -1.64
VPS41-208ENST00000448833 OR10G9Q8NGN4 311 aa4.83□□□□□ -1.64
VPS41-208ENST00000448833 OR10G7Q8NGN6 311 aa4.83□□□□□ -1.64
VPS41-208ENST00000448833 ASB13Q8WXK3 278 aa4.83□□□□□ -1.64
VPS41-208ENST00000448833 NAGKQ9UJ70 344 aa4.83□□□□□ -1.64
VPS41-208ENST00000448833 ABCA13Q86UQ4 5058 aa4.83□□□□□ -1.64
VPS41-208ENST00000448833 IGHV3-16A0A0C4DH30 117 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 PSCAO43653 123 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 PPT1P50897 306 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 KRTAP10-2P60368 255 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 ZNF876PQ49A33 203 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 SAPCD1Q5SSQ6 148 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 LCE1DQ5T752 114 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 C5orf17Q8NAS9 161 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 NHLRC2Q8NBF2 726 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 OR2G3Q8NGZ4 309 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 PTH2Q96A98 100 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 ZNF479Q96JC4 524 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 PRADC1Q9BSG0 188 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 PSMG3Q9BT73 122 aaPredicted RBP4.82□□□□□ -1.64
VPS41-208ENST00000448833 SMIM3Q9BZL3 60 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 TMEM167BQ9NRX6 74 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 RPH3ALQ9UNE2 315 aa4.82□□□□□ -1.64
VPS41-208ENST00000448833 IGHV3-38A0A0C4DH36 116 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 TRBV6-4A0A1B0GX49 114 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 EPM2AB3EWF7 344 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 GNRH2O43555 120 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 CXorf1O96002 111 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 CRYGDP07320 174 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 SFTA3P0C7M3 94 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 STAG3L2P0CL84 134 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 STAG3L3P0CL85 134 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 MGST1P10620 155 aaKnown RBP4.81□□□□□ -1.64
VPS41-208ENST00000448833 CDC34P49427 236 aaPredicted RBP4.81□□□□□ -1.64
VPS41-208ENST00000448833 IFITM3Q01628 133 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 SMUG1Q53HV7 270 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 PIK3CD-AS1Q5SR53 167 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 Q6ZQT7 251 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 INO80EQ8NBZ0 244 aaPredicted RBP4.81□□□□□ -1.64
VPS41-208ENST00000448833 NKX6-2Q9C056 277 aaPredicted RBP4.81□□□□□ -1.64
VPS41-208ENST00000448833 ACTR3CQ9C0K3 210 aaPredicted RBP4.81□□□□□ -1.64
VPS41-208ENST00000448833 TNFSF18Q9UNG2 199 aa4.81□□□□□ -1.64
VPS41-208ENST00000448833 A0A087WTM6 91 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 BORCS7-ASMTA0A0B4J1R7 106 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 TCRAP04437 139 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 TYMSP04818 313 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 ARL14EPLP0DKL9 152 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 GATA1P15976 413 aaPredicted RBP4.8□□□□□ -1.64
VPS41-208ENST00000448833 RHOHQ15669 191 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 LINC01556Q5JQF7 62 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms