RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 CLEC2AQ6UVW9 174 aa12.54□□□□□ -0.4
CLCNKA-203ENST00000439316 TMEM158Q8WZ71 300 aa12.54□□□□□ -0.4
CLCNKA-203ENST00000439316 IGHV4-4A0A075B6R2 117 aa12.54□□□□□ -0.4
CLCNKA-203ENST00000439316 GAGE10A6NGK3 116 aa12.54□□□□□ -0.4
CLCNKA-203ENST00000439316 NRACQ8N912 160 aa12.54□□□□□ -0.4
CLCNKA-203ENST00000439316 AP1S3Q96PC3 154 aa12.54□□□□□ -0.4
CLCNKA-203ENST00000439316 CELSR1Q9NYQ6 3014 aa12.54□□□□□ -0.4
CLCNKA-203ENST00000439316 IGKV2D-26A0A0A0MRZ7 120 aa12.53□□□□□ -0.4
CLCNKA-203ENST00000439316 IGHV3-49A0A0A0MS15 119 aa12.53□□□□□ -0.4
CLCNKA-203ENST00000439316 IGHV4-61A0A0C4DH41 118 aa12.53□□□□□ -0.4
CLCNKA-203ENST00000439316 ATP5LO75964 103 aa12.53□□□□□ -0.4
CLCNKA-203ENST00000439316 KRTAP10-9P60411 292 aa12.53□□□□□ -0.4
CLCNKA-203ENST00000439316 GTF2H5Q6ZYL4 71 aa12.53□□□□□ -0.4
CLCNKA-203ENST00000439316 C5orf56Q8N8D9 126 aa12.53□□□□□ -0.4
CLCNKA-203ENST00000439316 HIGD1BQ9P298 99 aa12.53□□□□□ -0.4
CLCNKA-203ENST00000439316 SMPXQ9UHP9 88 aa12.53□□□□□ -0.4
CLCNKA-203ENST00000439316 GCN1Q92616 2671 aaKnown RBP12.53□□□□□ -0.4
CLCNKA-203ENST00000439316 IGHV4-30-2A0A087WSY4 118 aa12.52□□□□□ -0.4
CLCNKA-203ENST00000439316 H3BUT2 72 aa12.52□□□□□ -0.4
CLCNKA-203ENST00000439316 NDUFS8O00217 210 aa12.52□□□□□ -0.4
CLCNKA-203ENST00000439316 NPFFO15130 113 aa12.52□□□□□ -0.4
CLCNKA-203ENST00000439316 ZNF207O43670 478 aaKnown RBP12.52□□□□□ -0.4
CLCNKA-203ENST00000439316 IGKCP01834 107 aa12.52□□□□□ -0.4
CLCNKA-203ENST00000439316 PRSS1P07477 247 aa12.52□□□□□ -0.4
CLCNKA-203ENST00000439316 A0A0G2JLM5 398 aa12.52□□□□□ -0.41
CLCNKA-203ENST00000439316 K7EP34 96 aa12.52□□□□□ -0.41
CLCNKA-203ENST00000439316 SMIM15Q7Z3B0 74 aa12.52□□□□□ -0.41
CLCNKA-203ENST00000439316 ATP6V0BQ99437 205 aa12.52□□□□□ -0.41
CLCNKA-203ENST00000439316 FOXC2Q99958 501 aa12.52□□□□□ -0.41
CLCNKA-203ENST00000439316 CSMD1Q96PZ7 3565 aa12.52□□□□□ -0.41
CLCNKA-203ENST00000439316 ATP5G2Q06055 141 aa12.51□□□□□ -0.41
CLCNKA-203ENST00000439316 DPM2O94777 84 aa12.5□□□□□ -0.41
CLCNKA-203ENST00000439316 SMIM17P0DL12 118 aa12.5□□□□□ -0.41
CLCNKA-203ENST00000439316 HLA-DRB4P13762 266 aa12.5□□□□□ -0.41
CLCNKA-203ENST00000439316 C19orf54Q5BKX5 351 aa12.5□□□□□ -0.41
CLCNKA-203ENST00000439316 HLA-DRB4X5D2U9 266 aa12.5□□□□□ -0.41
CLCNKA-203ENST00000439316 LAGE3Q14657 143 aa12.5□□□□□ -0.41
CLCNKA-203ENST00000439316 GLMPQ8WWB7 406 aa12.5□□□□□ -0.41
CLCNKA-203ENST00000439316 UFC1Q9Y3C8 167 aa12.5□□□□□ -0.41
CLCNKA-203ENST00000439316 Q6ZQT7 251 aa12.49□□□□□ -0.41
CLCNKA-203ENST00000439316 C9orf139Q6ZV77 190 aa12.49□□□□□ -0.41
CLCNKA-203ENST00000439316 LENEPQ9Y5L5 61 aa12.49□□□□□ -0.41
CLCNKA-203ENST00000439316 TRAV26-2A0A0B4J265 109 aa12.49□□□□□ -0.41
CLCNKA-203ENST00000439316 FAM223BA6NKX1 122 aa12.49□□□□□ -0.41
CLCNKA-203ENST00000439316 CRIP2P52943 208 aaPredicted RBP12.49□□□□□ -0.41
CLCNKA-203ENST00000439316 PRR9Q5T870 116 aa12.49□□□□□ -0.41
CLCNKA-203ENST00000439316 FAM223AQ8IWN6 122 aa12.49□□□□□ -0.41
CLCNKA-203ENST00000439316 NAA38Q9BRA0 125 aaKnown RBP12.49□□□□□ -0.41
CLCNKA-203ENST00000439316 CHAC1Q9BUX1 264 aa12.49□□□□□ -0.41
CLCNKA-203ENST00000439316 MOB4Q9Y3A3 225 aa12.49□□□□□ -0.41
CLCNKA-203ENST00000439316 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.48□□□□□ -0.41
CLCNKA-203ENST00000439316 ZANQ9Y493 2812 aa12.48□□□□□ -0.41
CLCNKA-203ENST00000439316 TRAV41A0A0B4J266 112 aa12.48□□□□□ -0.41
CLCNKA-203ENST00000439316 A0A1W2PPM0 123 aa12.48□□□□□ -0.41
CLCNKA-203ENST00000439316 K7ERU9 68 aa12.48□□□□□ -0.41
CLCNKA-203ENST00000439316 SPANXN1Q5VSR9 72 aa12.48□□□□□ -0.41
CLCNKA-203ENST00000439316 RAB37Q96AX2 223 aa12.48□□□□□ -0.41
CLCNKA-203ENST00000439316 C16orf92Q96LL3 132 aa12.48□□□□□ -0.41
CLCNKA-203ENST00000439316 C20orf173Q96LM9 149 aa12.48□□□□□ -0.41
CLCNKA-203ENST00000439316 TTTY13Q9BZ97 58 aa12.48□□□□□ -0.41
CLCNKA-203ENST00000439316 ZC2HC1BQ5TFG8 222 aa12.47□□□□□ -0.41
CLCNKA-203ENST00000439316 GTSCR1Q86UQ5 136 aa12.47□□□□□ -0.41
CLCNKA-203ENST00000439316 MRAP2Q96G30 205 aa12.47□□□□□ -0.41
CLCNKA-203ENST00000439316 VPS25Q9BRG1 176 aa12.47□□□□□ -0.41
CLCNKA-203ENST00000439316 H3BVH4 76 aa12.47□□□□□ -0.41
CLCNKA-203ENST00000439316 FXYD2P54710 66 aa12.47□□□□□ -0.41
CLCNKA-203ENST00000439316 DSCR9P59020 149 aa12.47□□□□□ -0.41
CLCNKA-203ENST00000439316 TM4SF20Q53R12 229 aa12.47□□□□□ -0.41
CLCNKA-203ENST00000439316 TMEM219Q86XT9 240 aa12.47□□□□□ -0.41
CLCNKA-203ENST00000439316 MYOZ3Q8TDC0 251 aa12.47□□□□□ -0.41
CLCNKA-203ENST00000439316 MRPL35Q9NZE8 188 aaKnown RBP12.47□□□□□ -0.41
CLCNKA-203ENST00000439316 FASNP49327 2511 aaKnown RBP12.46□□□□□ -0.41
CLCNKA-203ENST00000439316 TRBV25-1A0A075B6N4 114 aa12.46□□□□□ -0.41
CLCNKA-203ENST00000439316 HIST2H2BCQ6DN03 193 aa12.46□□□□□ -0.41
CLCNKA-203ENST00000439316 A0A087WX48 190 aa12.45□□□□□ -0.42
CLCNKA-203ENST00000439316 SMIM13P0DJ93 91 aa12.45□□□□□ -0.42
CLCNKA-203ENST00000439316 GCSHP23434 173 aa12.45□□□□□ -0.42
CLCNKA-203ENST00000439316 GPHB5Q86YW7 130 aa12.45□□□□□ -0.42
CLCNKA-203ENST00000439316 OR5A1Q8NGJ0 315 aa12.45□□□□□ -0.42
CLCNKA-203ENST00000439316 ZFHX3Q15911 3703 aa12.45□□□□□ -0.42
CLCNKA-203ENST00000439316 TRAV40A0A0B4J280 105 aa12.45□□□□□ -0.42
CLCNKA-203ENST00000439316 ARL3P36405 182 aa12.45□□□□□ -0.42
CLCNKA-203ENST00000439316 ZFAND2AQ8N6M9 145 aa12.45□□□□□ -0.42
CLCNKA-203ENST00000439316 SMIM2Q9BVW6 85 aa12.45□□□□□ -0.42
CLCNKA-203ENST00000439316 TMEM160Q9NX00 188 aa12.45□□□□□ -0.42
CLCNKA-203ENST00000439316 SPCS1Q9Y6A9 102 aa12.45□□□□□ -0.42
CLCNKA-203ENST00000439316 ITPR2Q14571 2701 aa12.44□□□□□ -0.42
CLCNKA-203ENST00000439316 SOCS3O14543 225 aa12.44□□□□□ -0.42
CLCNKA-203ENST00000439316 IGF1P05019 195 aa12.44□□□□□ -0.42
CLCNKA-203ENST00000439316 LINC00477Q96M19 166 aa12.44□□□□□ -0.42
CLCNKA-203ENST00000439316 CREBBPQ92793 2442 aa12.44□□□□□ -0.42
CLCNKA-203ENST00000439316 CCDC168Q8NDH2 2452 aa12.44□□□□□ -0.42
CLCNKA-203ENST00000439316 CSPG4Q6UVK1 2322 aa12.44□□□□□ -0.42
CLCNKA-203ENST00000439316 SAP30O75446 220 aa12.43□□□□□ -0.42
CLCNKA-203ENST00000439316 TM2D2Q9BX73 214 aa12.43□□□□□ -0.42
CLCNKA-203ENST00000439316 LINC00527Q9UJ94 153 aa12.43□□□□□ -0.42
CLCNKA-203ENST00000439316 FABP2P12104 132 aa12.43□□□□□ -0.42
CLCNKA-203ENST00000439316 UNQ9165/PRO28630Q6UXU0 137 aa12.43□□□□□ -0.42
CLCNKA-203ENST00000439316 TRAV12-1A0A0B4J245 112 aa12.42□□□□□ -0.42
CLCNKA-203ENST00000439316 NDUFA4O00483 81 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms