RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 FAM210BQ96KR6 192 aa4.9□□□□□ -1.63
VPS41-204ENST00000413141 TRRAPQ9Y4A5 3859 aa4.9□□□□□ -1.63
VPS41-204ENST00000413141 STAB1Q9NY15 2570 aa4.9□□□□□ -1.63
VPS41-204ENST00000413141 CRXO43186 299 aaPredicted RBP4.89□□□□□ -1.63
VPS41-204ENST00000413141 IGLC6P0CF74 106 aa4.89□□□□□ -1.63
VPS41-204ENST00000413141 RBMY1A1P0DJD3 496 aaKnown RBP4.89□□□□□ -1.63
VPS41-204ENST00000413141 RBMY1CP0DJD4 496 aa4.89□□□□□ -1.63
VPS41-204ENST00000413141 CTRLP40313 264 aa4.89□□□□□ -1.63
VPS41-204ENST00000413141 FOXA3P55318 350 aaPredicted RBP4.89□□□□□ -1.63
VPS41-204ENST00000413141 FXYD7P58549 80 aa4.89□□□□□ -1.63
VPS41-204ENST00000413141 RBMY1FQ15415 496 aaKnown RBP4.89□□□□□ -1.63
VPS41-204ENST00000413141 PRR31Q5SQ13 230 aa4.89□□□□□ -1.63
VPS41-204ENST00000413141 ZNF575Q86XF7 245 aa4.89□□□□□ -1.63
VPS41-204ENST00000413141 NAGKQ9UJ70 344 aa4.89□□□□□ -1.63
VPS41-204ENST00000413141 COL6A5A8TX70 2615 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 TRAV12-3A0A0B4J271 114 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 A0A1B0GXF2 115 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 GRIFINA4D1Z8 144 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 SPINK4O60575 86 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 ZNF324O75467 553 aaPredicted RBP4.88□□□□□ -1.63
VPS41-204ENST00000413141 INSP01308 110 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 AMBPP02760 352 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 RPS10P46783 165 aaKnown RBP4.88□□□□□ -1.63
VPS41-204ENST00000413141 TDRG1Q3Y452 100 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 ANXA2RQ3ZCQ2 193 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 MUC21Q5SSG8 566 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 MRPL54Q6P161 138 aaKnown RBP4.88□□□□□ -1.63
VPS41-204ENST00000413141 ATP5L2Q7Z4Y8 100 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 LURAP1LQ8IV03 231 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 FER1L6-AS1Q8NA97 138 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 PGLYRP4Q96LB8 373 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 MDFIQ99750 246 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 TPPP3Q9BW30 176 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 SRD5A3Q9H8P0 318 aa4.88□□□□□ -1.63
VPS41-204ENST00000413141 A0A1B0GUT8 65 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 H3BVH4 76 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 ARMS2P0C7Q2 107 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 FRMD6-AS1P0C7T7 363 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 ASIPP42127 132 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 NUTF2P61970 127 aaKnown RBP4.87□□□□□ -1.63
VPS41-204ENST00000413141 HBBP68871 147 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 RASL11AQ6T310 242 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 LYZL1Q6UWQ5 148 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 FAM159AQ6UWV7 190 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 DEFB125Q8N687 156 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 KCNS1Q96KK3 526 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 C20orf144Q9BQM9 153 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 CNFNQ9BYD5 112 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 TMA7Q9Y2S6 64 aaKnown RBP4.87□□□□□ -1.63
VPS41-204ENST00000413141 AGRNO00468 2067 aa4.87□□□□□ -1.63
VPS41-204ENST00000413141 IGHV1OR15-1A0A075B7D0 117 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 SNURFLB1AK76 121 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 PHOX2AO14813 284 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 SNAI2O43623 268 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 MT-ND6P03923 174 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 TRGC2P03986 189 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 GIG44P09565 113 aaPredicted RBP4.86□□□□□ -1.63
VPS41-204ENST00000413141 OR5AL1P0C617 328 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 MED14OSP0DP75 135 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 RPL35AP18077 110 aaKnown RBP4.86□□□□□ -1.63
VPS41-204ENST00000413141 EGFEM1PQ0D2K5 195 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 COX19Q49B96 90 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 DNLZQ5SXM8 178 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 WDR73Q6P4I2 378 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 MORN3Q6PF18 240 aaPredicted RBP4.86□□□□□ -1.63
VPS41-204ENST00000413141 TMEM136Q6ZRR5 245 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 Q8N1Y9 231 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 OR10AG1Q8NH19 301 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 BORCS7Q96B45 105 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 SSBP4Q9BWG4 385 aaPredicted RBP4.86□□□□□ -1.63
VPS41-204ENST00000413141 GNB1LQ9BYB4 327 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 XCL2Q9UBD3 114 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 TP53TG3Q9ULZ0 132 aa4.86□□□□□ -1.63
VPS41-204ENST00000413141 TRGV11A0A075B6L2 103 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 IGHV3-16A0A0C4DH30 117 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 MUC21A0A0G2JKD1 596 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 MUC21A0A140T8X8 626 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 A0A1B0GW15 77 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 CBY3A6NI87 242 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 C1orf196B1AJZ1 125 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 F2Z2F3 143 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 GNRH2O43555 120 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 HLA-DQA1P01909 254 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 S100A8P05109 93 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 RNASE3P12724 160 aaKnown RBP4.85□□□□□ -1.63
VPS41-204ENST00000413141 S100A4P26447 101 aaKnown RBP4.85□□□□□ -1.63
VPS41-204ENST00000413141 CAMPP49913 170 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 KRTAP10-11P60412 298 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 RAB4BP61018 213 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 RIGQ13278 110 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 LCE2CQ5TA81 110 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 C1orf158Q8N1D5 194 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 GATD1Q8NB37 220 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 C9orf85Q96MD7 179 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 LINC00467Q9BRT7 94 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 C1QTNF4Q9BXJ3 329 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 MRPL18Q9H0U6 180 aaKnown RBP4.85□□□□□ -1.63
VPS41-204ENST00000413141 SCRT2Q9NQ03 307 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 TRAPPC1Q9Y5R8 145 aa4.85□□□□□ -1.63
VPS41-204ENST00000413141 SORL1Q92673 2214 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms