RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 DYNLRB2Q8TF09 96 aa10.07□□□□□ -0.8
LIMS1-204ENST00000409441 RCHY1Q96PM5 261 aa10.07□□□□□ -0.8
LIMS1-204ENST00000409441 IGLV1-51P01701 117 aa10.07□□□□□ -0.8
LIMS1-204ENST00000409441 HLA-DMBP28068 263 aa10.07□□□□□ -0.8
LIMS1-204ENST00000409441 GLMPQ8WWB7 406 aa10.07□□□□□ -0.8
LIMS1-204ENST00000409441 VGLL1Q99990 258 aa10.07□□□□□ -0.8
LIMS1-204ENST00000409441 LOC102724200A0A096LPH7 203 aaPredicted RBP10.06□□□□□ -0.8
LIMS1-204ENST00000409441 CD300EQ496F6 205 aaPredicted RBP10.06□□□□□ -0.8
LIMS1-204ENST00000409441 ZNF664Q8N3J9 261 aa10.06□□□□□ -0.8
LIMS1-204ENST00000409441 ASCL2Q99929 193 aa10.06□□□□□ -0.8
LIMS1-204ENST00000409441 NRN1Q9NPD7 142 aa10.06□□□□□ -0.8
LIMS1-204ENST00000409441 ZNF705FA8MVS1 300 aaPredicted RBP10.05□□□□□ -0.8
LIMS1-204ENST00000409441 ARMS2P0C7Q2 107 aa10.05□□□□□ -0.8
LIMS1-204ENST00000409441 ZNF705DP0CH99 300 aaPredicted RBP10.05□□□□□ -0.8
LIMS1-204ENST00000409441 ZNF705BP0CI00 300 aaPredicted RBP10.05□□□□□ -0.8
LIMS1-204ENST00000409441 PMCHP20382 165 aa10.05□□□□□ -0.8
LIMS1-204ENST00000409441 DDTP30046 118 aa10.05□□□□□ -0.8
LIMS1-204ENST00000409441 RPL11P62913 178 aaKnown RBP10.05□□□□□ -0.8
LIMS1-204ENST00000409441 IGFL4Q6B9Z1 124 aa10.05□□□□□ -0.8
LIMS1-204ENST00000409441 PPP1R14DQ9NXH3 145 aa10.05□□□□□ -0.8
LIMS1-204ENST00000409441 TRAV8-2A0A0B4J237 113 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 WIPF1O43516 503 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 HSBP1O75506 76 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 DEFA6Q01524 100 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 TEX43Q6ZNM6 134 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 ZNF493Q6ZR52 646 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 CHCHD1Q96BP2 118 aaKnown RBP10.04□□□□□ -0.8
LIMS1-204ENST00000409441 PRO1933Q9H354 126 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 FABP5P3A8MUU1 101 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 RAB4AP20338 218 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 CTRLP40313 264 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 NIT1Q86X76 327 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 TMEM61Q8N0U2 210 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 Q8TAT8 98 aa10.04□□□□□ -0.8
LIMS1-204ENST00000409441 IGKV3-7A0A075B6H7 116 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 TRAV25A0A0B4J276 109 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 KIR2DL5BA0A0G2JN68 375 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 KIR2DL5BA0A0G2JPC4 375 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 PRAC2D3DTV9 90 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 G3V4G9 280 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 ZNF138P52744 262 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 HIST1H1AQ02539 215 aaPredicted RBP10.03□□□□□ -0.8
LIMS1-204ENST00000409441 TMEM78Q5T7P6 136 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 C9orf47Q6ZRZ4 202 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 KIR2DL5AQ8N109 375 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 RNF182Q8N6D2 247 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 OR2K2Q8NGT1 345 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 LENEPQ9Y5L5 61 aa10.03□□□□□ -0.8
LIMS1-204ENST00000409441 MGAM2Q2M2H8 2515 aa10.02□□□□□ -0.81
LIMS1-204ENST00000409441 IGLC6P0CF74 106 aa10.02□□□□□ -0.81
LIMS1-204ENST00000409441 PRB4P10163 310 aaPredicted RBP10.02□□□□□ -0.81
LIMS1-204ENST00000409441 ZNF80P51504 273 aaPredicted RBP10.02□□□□□ -0.81
LIMS1-204ENST00000409441 LINC01559Q495D7 138 aa10.02□□□□□ -0.81
LIMS1-204ENST00000409441 RNASEKQ6P5S7 137 aaKnown RBP10.02□□□□□ -0.81
LIMS1-204ENST00000409441 LYZL1Q6UWQ5 148 aa10.02□□□□□ -0.81
LIMS1-204ENST00000409441 C16orf92Q96LL3 132 aa10.02□□□□□ -0.81
LIMS1-204ENST00000409441 M0R2Z0 102 aa10.01□□□□□ -0.81
LIMS1-204ENST00000409441 NTF3P20783 257 aa10.01□□□□□ -0.81
LIMS1-204ENST00000409441 KRTDAPP60985 99 aa10.01□□□□□ -0.81
LIMS1-204ENST00000409441 ERCC8Q13216 396 aa10.01□□□□□ -0.81
LIMS1-204ENST00000409441 SAMD5Q5TGI4 173 aa10.01□□□□□ -0.81
LIMS1-204ENST00000409441 FER1L6-AS1Q8NA97 138 aa10.01□□□□□ -0.81
LIMS1-204ENST00000409441 AGPAT4-IT1Q9H0P7 198 aa10.01□□□□□ -0.81
LIMS1-204ENST00000409441 WFDC3Q8IUB2 231 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 FAM19A2Q8N3H0 131 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 URB1-AS1Q96HZ7 61 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 TPPP3Q9BW30 176 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 MS4A6AQ9H2W1 248 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 DNHD1Q96M86 4753 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 TMSB15BA0A087X1C1 80 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 C3orf79P0CE67 100 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 TFPI2P48307 235 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 EGFEM1PQ0D2K5 195 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 Q8N976 141 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 SPAG8Q99932 426 aaPredicted RBP10□□□□□ -0.81
LIMS1-204ENST00000409441 C20orf144Q9BQM9 153 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 NDUFAF3Q9BU61 184 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 CNFNQ9BYD5 112 aa10□□□□□ -0.81
LIMS1-204ENST00000409441 SOCS3O14543 225 aa9.99□□□□□ -0.81
LIMS1-204ENST00000409441 ORM1P02763 201 aa9.99□□□□□ -0.81
LIMS1-204ENST00000409441 OR5AL1P0C617 328 aa9.99□□□□□ -0.81
LIMS1-204ENST00000409441 LINC00614P0C842 121 aa9.99□□□□□ -0.81
LIMS1-204ENST00000409441 KRTAP10-11P60412 298 aa9.99□□□□□ -0.81
LIMS1-204ENST00000409441 SAMD13Q5VXD3 122 aa9.99□□□□□ -0.81
LIMS1-204ENST00000409441 C14orf144Q96I85 54 aa9.99□□□□□ -0.81
LIMS1-204ENST00000409441 LINC00477Q96M19 166 aa9.99□□□□□ -0.81
LIMS1-204ENST00000409441 VAMP8Q9BV40 100 aa9.99□□□□□ -0.81
LIMS1-204ENST00000409441 ZMAT5Q9UDW3 170 aaKnown RBP9.99□□□□□ -0.81
LIMS1-204ENST00000409441 U3KQK5 164 aa9.99□□□□□ -0.81
LIMS1-204ENST00000409441 FAM104BQ5XKR9 115 aa9.98□□□□□ -0.81
LIMS1-204ENST00000409441 ZNF256Q9Y2P7 627 aaPredicted RBP9.98□□□□□ -0.81
LIMS1-204ENST00000409441 OR4C46A6NHA9 309 aa9.97□□□□□ -0.81
LIMS1-204ENST00000409441 PMCHL1Q16048 86 aa9.97□□□□□ -0.81
LIMS1-204ENST00000409441 BEAN1Q3B7T3 259 aa9.97□□□□□ -0.81
LIMS1-204ENST00000409441 ZNF575Q86XF7 245 aa9.97□□□□□ -0.81
LIMS1-204ENST00000409441 ZNF738Q8NE65 137 aa9.97□□□□□ -0.81
LIMS1-204ENST00000409441 DCANP1Q8TF63 244 aa9.97□□□□□ -0.81
LIMS1-204ENST00000409441 TRAV2A0A0B4J234 112 aa9.96□□□□□ -0.81
LIMS1-204ENST00000409441 K7EQG2 157 aa9.96□□□□□ -0.81
LIMS1-204ENST00000409441 BTF3P20290 206 aaKnown RBP9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms