RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 NREPQ16612 68 aa4.78□□□□□ -1.65
SCN1A-203ENST00000409050 KIF26BQ2KJY2 2108 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 PLA2G2CQ5R387 149 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 DKK2Q9UBU2 259 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 TRPM7Q96QT4 1865 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 NDUFC1O43677 76 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 FAM120AOSQ5T036 256 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 SP5Q6BEB4 398 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-203ENST00000409050 MDFICQ9P1T7 246 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 RNF144BQ7Z419 303 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 KLK9Q9UKQ9 250 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 TAX1BP3O14907 124 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 HOXB4P17483 251 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-203ENST00000409050 MYCNOSP40205 109 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 UBE2BP63146 152 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 FOXI1Q12951 378 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 RSPO1Q2MKA7 263 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-203ENST00000409050 KIR2DL5BQ8NHK3 375 aa4.77□□□□□ -1.65
SCN1A-203ENST00000409050 IGFL4Q6B9Z1 124 aa4.76□□□□□ -1.65
SCN1A-203ENST00000409050 WFDC12Q8WWY7 111 aa4.76□□□□□ -1.65
SCN1A-203ENST00000409050 IMUPQ9GZP8 106 aa4.76□□□□□ -1.65
SCN1A-203ENST00000409050 U3KQE9 123 aa4.76□□□□□ -1.65
SCN1A-203ENST00000409050 CHKB-CPT1BH3BT56 60 aa4.76□□□□□ -1.65
SCN1A-203ENST00000409050 DAZAP2Q15038 168 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-203ENST00000409050 GREB1Q4ZG55 1949 aa4.76□□□□□ -1.65
SCN1A-203ENST00000409050 WIPF3A6NGB9 483 aa4.76□□□□□ -1.65
SCN1A-203ENST00000409050 LYPD6Q86Y78 171 aa4.76□□□□□ -1.65
SCN1A-203ENST00000409050 DIRC1Q969H9 104 aa4.76□□□□□ -1.65
SCN1A-203ENST00000409050 CABIN1Q9Y6J0 2220 aa4.76□□□□□ -1.65
SCN1A-203ENST00000409050 BUB3O43684 328 aa4.76□□□□□ -1.65
SCN1A-203ENST00000409050 G3V318 75 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 MRAPQ8TCY5 172 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 ZNF503Q96F45 646 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 TRBV7-3A0A075B6L6 115 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 TRAV4A0A0B4J268 109 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 K7EIM0 57 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 CCL18P55774 89 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 LINC00574Q9H8X3 128 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 TRAV26-1A0A087WT03 109 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 LGALS9O00182 355 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 CAMK2N2Q96S95 79 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 FGF23Q9GZV9 251 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-203ENST00000409050 ZNF581Q9P0T4 197 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 TDRD6O60522 2096 aaKnown RBP4.75□□□□□ -1.65
SCN1A-203ENST00000409050 G3V4G9 280 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 NXPH4O95158 308 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 FBXL19-AS1Q494R0 122 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 HIGD2BQ4VC39 106 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 PIP4P1Q86T03 277 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 FREM3P0C091 2139 aa4.75□□□□□ -1.65
SCN1A-203ENST00000409050 SMIM9A6NGZ8 99 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 DEFB121Q5J5C9 76 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 MUSTN1Q8IVN3 82 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 C11orf53Q8IXP5 236 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 XIRP1Q702N8 1843 aaKnown RBP4.74□□□□□ -1.65
SCN1A-203ENST00000409050 UQCRQO14949 82 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 SEC61GP60059 68 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 TRAV26-2A0A0B4J265 109 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 LY6G6EA0A0G2JKS1 128 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 TINCRA0A1B0GVN0 87 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 C19orf71A6NCJ1 209 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 IGKV1-17P01599 117 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 LOXL1Q08397 574 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-203ENST00000409050 CITED2Q99967 270 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-203ENST00000409050 U3KQA8 63 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 FAM222AQ5U5X8 452 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 RUSC1-AS1Q66K80 236 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 UFSP1Q6NVU6 142 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 FAM167A-AS1Q96KT0 104 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 FAM215AQ9Y5M1 114 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 RNF223E7ERA6 249 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 CCL24O00175 119 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 TIMM17BO60830 172 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 TIRAPP58753 221 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 LY6DQ14210 128 aa4.74□□□□□ -1.65
SCN1A-203ENST00000409050 IGHV7-81A0A0B4J1V7 117 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 C20orf203Q8NBC4 194 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 TSC2P49815 1807 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 CTSGP08311 255 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 MIAQ16674 131 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 ARTNQ5T4W7 220 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 BAALCQ8WXS3 180 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 ASCC3Q8N3C0 2202 aaKnown RBP4.73□□□□□ -1.65
SCN1A-203ENST00000409050 LRRK1Q38SD2 2015 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 B5MCH6 92 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 PROP1O75360 226 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 P0DMU3 169 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 FAM231AP0DMU4 169 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 FAM231CP0DMU5 169 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 PCP2Q8IVA1 136 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 IGHV3-16A0A0C4DH30 117 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 LINC00205P59089 165 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 K7ERJ3 54 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 PRB3Q04118 309 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-203ENST00000409050 ODF1Q14990 250 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 HIST2H2BCQ6DN03 193 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 HIST2H2BDQ6DRA6 164 aa4.73□□□□□ -1.65
SCN1A-203ENST00000409050 ATG2BQ96BY7 2078 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 SBF1O95248 1867 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 A0A1B0GXF2 115 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms