RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 C8orf86Q6ZUL3 223 aa9.82□□□□□ -0.84
SMARCB1-203ENST00000407082 ORMDL3Q8N138 153 aa9.82□□□□□ -0.84
SMARCB1-203ENST00000407082 Q8N2B8 174 aa9.82□□□□□ -0.84
SMARCB1-203ENST00000407082 VGLL1Q99990 258 aa9.82□□□□□ -0.84
SMARCB1-203ENST00000407082 PAM16Q9Y3D7 125 aa9.82□□□□□ -0.84
SMARCB1-203ENST00000407082 NOTCH3Q9UM47 2321 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 TRAV9-2A0A087WT02 112 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 HSBP1L1C9JCN9 74 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 K7EMT4 169 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 CRXO43186 299 aaPredicted RBP9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 IGHG4P01861 327 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 IGLC6P0CF74 106 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 PF4V1P10720 104 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 CACNG7P62955 275 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 OR10J6PQ8NGY7 276 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 OR10AG1Q8NH19 301 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 GLMPQ8WWB7 406 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 AP5S1Q9NUS5 200 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 ZMAT5Q9UDW3 170 aaKnown RBP9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 U3KQK5 164 aa9.81□□□□□ -0.84
SMARCB1-203ENST00000407082 TRBV7-9A0A0J9YWB2 115 aa9.8□□□□□ -0.84
SMARCB1-203ENST00000407082 TWIST1Q15672 202 aa9.8□□□□□ -0.84
SMARCB1-203ENST00000407082 OXLD1Q5BKU9 147 aa9.8□□□□□ -0.84
SMARCB1-203ENST00000407082 Q8N976 141 aa9.8□□□□□ -0.84
SMARCB1-203ENST00000407082 PRELID3AQ96N28 172 aa9.8□□□□□ -0.84
SMARCB1-203ENST00000407082 CNFNQ9BYD5 112 aa9.8□□□□□ -0.84
SMARCB1-203ENST00000407082 TENM3Q9P273 2699 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 TMSB15BA0A087X1C1 80 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 IGHV1-24A0A0C4DH33 117 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 C2orf70A6NJV1 201 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 IGLV1-40P01703 118 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 CD33P20138 364 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 ID1P41134 155 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 SSTP61278 116 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 FOXE3Q13461 319 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 TMEM95Q3KNT9 176 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 C11orf44Q8N8P7 122 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 OR4X2Q8NGF9 303 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 AGPAT4-IT1Q9H0P7 198 aa9.79□□□□□ -0.84
SMARCB1-203ENST00000407082 IGHV3OR16-8A0A075B7F1 116 aa9.78□□□□□ -0.84
SMARCB1-203ENST00000407082 HLA-DMBP28068 263 aa9.78□□□□□ -0.84
SMARCB1-203ENST00000407082 CKS2P33552 79 aa9.78□□□□□ -0.84
SMARCB1-203ENST00000407082 PSMG4Q5JS54 123 aa9.78□□□□□ -0.84
SMARCB1-203ENST00000407082 ZNF738Q8NE65 137 aa9.78□□□□□ -0.84
SMARCB1-203ENST00000407082 Q8TAT8 98 aa9.78□□□□□ -0.84
SMARCB1-203ENST00000407082 PEF1Q9UBV8 284 aaKnown RBP9.78□□□□□ -0.84
SMARCB1-203ENST00000407082 LINC00527Q9UJ94 153 aa9.78□□□□□ -0.84
SMARCB1-203ENST00000407082 UFC1Q9Y3C8 167 aa9.78□□□□□ -0.84
SMARCB1-203ENST00000407082 TRAV8-2A0A0B4J237 113 aa9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 IGHV3-66A0A0C4DH42 116 aa9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 SYS1-DBNDD2H3BUS1 97 aa9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 ZNF207O43670 478 aaKnown RBP9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 ERCC8Q13216 396 aa9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 DEFB121Q5J5C9 76 aa9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 IGFL4Q6B9Z1 124 aa9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 EBLN2Q6P2I7 272 aa9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 GPHB5Q86YW7 130 aa9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 URB1-AS1Q96HZ7 61 aa9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 MS4A6AQ9H2W1 248 aa9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 MAP1LC3AQ9H492 121 aa9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 ST20Q9HBF5 79 aa9.77□□□□□ -0.85
SMARCB1-203ENST00000407082 IGHV7-4-1A0A0J9YVY3 117 aa9.76□□□□□ -0.85
SMARCB1-203ENST00000407082 D6R8Y8 96 aa9.76□□□□□ -0.85
SMARCB1-203ENST00000407082 CSN3P07498 182 aa9.76□□□□□ -0.85
SMARCB1-203ENST00000407082 ZNF80P51504 273 aaPredicted RBP9.76□□□□□ -0.85
SMARCB1-203ENST00000407082 MRPL51Q4U2R6 128 aaKnown RBP9.76□□□□□ -0.85
SMARCB1-203ENST00000407082 LCE2DQ5TA82 110 aaPredicted RBP9.76□□□□□ -0.85
SMARCB1-203ENST00000407082 SPATA12Q7Z6I5 190 aa9.76□□□□□ -0.85
SMARCB1-203ENST00000407082 RNF182Q8N6D2 247 aa9.76□□□□□ -0.85
SMARCB1-203ENST00000407082 NXT2Q9NPJ8 142 aaKnown RBP9.76□□□□□ -0.85
SMARCB1-203ENST00000407082 DAZ1Q9NQZ3 744 aaKnown RBP9.76□□□□□ -0.85
SMARCB1-203ENST00000407082 TRAV21A0A0B4J279 112 aa9.75□□□□□ -0.85
SMARCB1-203ENST00000407082 OR4C46A6NHA9 309 aa9.75□□□□□ -0.85
SMARCB1-203ENST00000407082 PRAC2D3DTV9 90 aa9.75□□□□□ -0.85
SMARCB1-203ENST00000407082 IGLC3P0DOY3 106 aa9.75□□□□□ -0.85
SMARCB1-203ENST00000407082 MED14OSP0DP75 135 aa9.75□□□□□ -0.85
SMARCB1-203ENST00000407082 HNRNPA3P51991 378 aaKnown RBP9.75□□□□□ -0.85
SMARCB1-203ENST00000407082 CFHR3Q02985 330 aa9.75□□□□□ -0.85
SMARCB1-203ENST00000407082 IGHV4-4A0A075B6R2 117 aa9.74□□□□□ -0.85
SMARCB1-203ENST00000407082 IGHV3OR16-13A0A075B7E8 117 aa9.74□□□□□ -0.85
SMARCB1-203ENST00000407082 IGHV3-74A0A0B4J1X5 117 aa9.74□□□□□ -0.85
SMARCB1-203ENST00000407082 TMEM213A2RRL7 107 aa9.74□□□□□ -0.85
SMARCB1-203ENST00000407082 NSUN5P1Q3KNT7 163 aa9.74□□□□□ -0.85
SMARCB1-203ENST00000407082 TDRG1Q3Y452 100 aa9.74□□□□□ -0.85
SMARCB1-203ENST00000407082 AMN1Q8IY45 258 aa9.74□□□□□ -0.85
SMARCB1-203ENST00000407082 PMCHL2Q9BQD1 86 aa9.74□□□□□ -0.85
SMARCB1-203ENST00000407082 SMPXQ9UHP9 88 aa9.74□□□□□ -0.85
SMARCB1-203ENST00000407082 MRPS16Q9Y3D3 137 aaKnown RBP9.74□□□□□ -0.85
SMARCB1-203ENST00000407082 IGHV3-49A0A0A0MS15 119 aa9.73□□□□□ -0.85
SMARCB1-203ENST00000407082 HBDP02042 147 aa9.73□□□□□ -0.85
SMARCB1-203ENST00000407082 RPLP1P05386 114 aaKnown RBP9.73□□□□□ -0.85
SMARCB1-203ENST00000407082 ELANEP08246 267 aa9.73□□□□□ -0.85
SMARCB1-203ENST00000407082 RPL11P62913 178 aaKnown RBP9.73□□□□□ -0.85
SMARCB1-203ENST00000407082 Q6ZN92 141 aa9.73□□□□□ -0.85
SMARCB1-203ENST00000407082 WWC2-AS2Q96NR7 200 aa9.73□□□□□ -0.85
SMARCB1-203ENST00000407082 RHPN1-AS1Q9BWJ2 59 aa9.73□□□□□ -0.85
SMARCB1-203ENST00000407082 SNHG12Q9BXW3 62 aa9.73□□□□□ -0.85
SMARCB1-203ENST00000407082 SIGLEC8Q9NYZ4 499 aa9.73□□□□□ -0.85
SMARCB1-203ENST00000407082 SNAI2O43623 268 aa9.72□□□□□ -0.85
SMARCB1-203ENST00000407082 IGHV3-11P01762 117 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms