RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 FLG2Q5D862 2391 aaPredicted RBP11.14□□□□□ -0.63
CUX2-202ENST00000397643 RBFOX3A6NFN3 312 aa11.13□□□□□ -0.63
CUX2-202ENST00000397643 PEX7O00628 323 aa11.13□□□□□ -0.63
CUX2-202ENST00000397643 INAFM2P0DMQ5 153 aa11.13□□□□□ -0.63
CUX2-202ENST00000397643 MEF2BQ02080 365 aaPredicted RBP11.13□□□□□ -0.63
CUX2-202ENST00000397643 ERCC8Q13216 396 aa11.13□□□□□ -0.63
CUX2-202ENST00000397643 CLLU1Q5K131 121 aa11.13□□□□□ -0.63
CUX2-202ENST00000397643 C9orf47Q6ZRZ4 202 aa11.13□□□□□ -0.63
CUX2-202ENST00000397643 CYB561D1Q8N8Q1 229 aa11.13□□□□□ -0.63
CUX2-202ENST00000397643 AGPAT4-IT1Q9H0P7 198 aa11.13□□□□□ -0.63
CUX2-202ENST00000397643 A0A1W2PPQ1 181 aa11.12□□□□□ -0.63
CUX2-202ENST00000397643 FBLL1A6NHQ2 334 aaKnown RBP11.12□□□□□ -0.63
CUX2-202ENST00000397643 PDE6DO43924 150 aa11.12□□□□□ -0.63
CUX2-202ENST00000397643 Q6ZRN7 208 aaPredicted RBP11.12□□□□□ -0.63
CUX2-202ENST00000397643 VGLL1Q99990 258 aa11.12□□□□□ -0.63
CUX2-202ENST00000397643 EIF5A2Q9GZV4 153 aaKnown RBP11.12□□□□□ -0.63
CUX2-202ENST00000397643 RGS13O14921 159 aa11.11□□□□□ -0.63
CUX2-202ENST00000397643 CT45A10P0DMU9 189 aa11.11□□□□□ -0.63
CUX2-202ENST00000397643 ZNF138P52744 262 aa11.11□□□□□ -0.63
CUX2-202ENST00000397643 XGP55808 180 aa11.11□□□□□ -0.63
CUX2-202ENST00000397643 TAS2R60P59551 318 aa11.11□□□□□ -0.63
CUX2-202ENST00000397643 ESRGQ1W209 222 aa11.11□□□□□ -0.63
CUX2-202ENST00000397643 ZNF506Q5JVG8 444 aa11.11□□□□□ -0.63
CUX2-202ENST00000397643 LINC00612Q8N6U2 182 aa11.11□□□□□ -0.63
CUX2-202ENST00000397643 RNASE8Q8TDE3 154 aaKnown RBP11.11□□□□□ -0.63
CUX2-202ENST00000397643 C16orf74Q96GX8 76 aa11.11□□□□□ -0.63
CUX2-202ENST00000397643 FAM210AQ96ND0 272 aa11.11□□□□□ -0.63
CUX2-202ENST00000397643 ODF3Q96PU9 254 aa11.11□□□□□ -0.63
CUX2-202ENST00000397643 TRAV26-1A0A087WT03 109 aa11.1□□□□□ -0.63
CUX2-202ENST00000397643 SCO2A0A1W2PP80 73 aa11.1□□□□□ -0.63
CUX2-202ENST00000397643 LEPP41159 167 aa11.1□□□□□ -0.63
CUX2-202ENST00000397643 AKR1C3P42330 323 aa11.1□□□□□ -0.63
CUX2-202ENST00000397643 TOR2AQ5JU69 321 aa11.1□□□□□ -0.63
CUX2-202ENST00000397643 TMEM256Q8N2U0 113 aa11.1□□□□□ -0.63
CUX2-202ENST00000397643 TMEM75Q8N9X5 138 aa11.1□□□□□ -0.63
CUX2-202ENST00000397643 LINC01587Q99440 93 aa11.1□□□□□ -0.63
CUX2-202ENST00000397643 NOP10Q9NPE3 64 aaKnown RBP11.1□□□□□ -0.63
CUX2-202ENST00000397643 ZNF492Q9P255 531 aa11.1□□□□□ -0.63
CUX2-202ENST00000397643 TIMM8BQ9Y5J9 83 aaPredicted RBP11.1□□□□□ -0.63
CUX2-202ENST00000397643 S100A9P06702 114 aaKnown RBP11.09□□□□□ -0.63
CUX2-202ENST00000397643 HOXA5P20719 270 aa11.09□□□□□ -0.63
CUX2-202ENST00000397643 FUSP35637 526 aaKnown RBP eCLIP11.09□□□□□ -0.63
CUX2-202ENST00000397643 LINC00315P59091 139 aa11.09□□□□□ -0.63
CUX2-202ENST00000397643 UBE2G1P62253 170 aa11.09□□□□□ -0.63
CUX2-202ENST00000397643 FLI1Q01543 452 aaPredicted RBP11.09□□□□□ -0.63
CUX2-202ENST00000397643 C11orf52Q96A22 123 aa11.09□□□□□ -0.63
CUX2-202ENST00000397643 NDFIP1Q9BT67 221 aa11.09□□□□□ -0.63
CUX2-202ENST00000397643 PSG8Q9UQ74 426 aa11.09□□□□□ -0.63
CUX2-202ENST00000397643 MRPS16Q9Y3D3 137 aaKnown RBP11.09□□□□□ -0.63
CUX2-202ENST00000397643 LENEPQ9Y5L5 61 aa11.09□□□□□ -0.63
CUX2-202ENST00000397643 TRAV8-1A0A0A6YYK1 113 aa11.08□□□□□ -0.64
CUX2-202ENST00000397643 TRAV34A0A0B4J273 112 aa11.08□□□□□ -0.64
CUX2-202ENST00000397643 TRBV7-9A0A0J9YWB2 115 aa11.08□□□□□ -0.64
CUX2-202ENST00000397643 OR5I1Q13606 314 aa11.08□□□□□ -0.64
CUX2-202ENST00000397643 PEA15Q15121 130 aa11.08□□□□□ -0.64
CUX2-202ENST00000397643 Q5VSD8 79 aa11.08□□□□□ -0.64
CUX2-202ENST00000397643 Q8TAT8 98 aa11.08□□□□□ -0.64
CUX2-202ENST00000397643 TMEM263Q8WUH6 116 aaKnown RBP11.08□□□□□ -0.64
CUX2-202ENST00000397643 FMC1Q96HJ9 113 aa11.08□□□□□ -0.64
CUX2-202ENST00000397643 LINC00479Q96M42 142 aa11.08□□□□□ -0.64
CUX2-202ENST00000397643 MED9Q9NWA0 146 aa11.08□□□□□ -0.64
CUX2-202ENST00000397643 KLF12Q9Y4X4 402 aa11.08□□□□□ -0.64
CUX2-202ENST00000397643 A0A0J9YY99 117 aa11.07□□□□□ -0.64
CUX2-202ENST00000397643 NDUFS6O75380 124 aaKnown RBP11.07□□□□□ -0.64
CUX2-202ENST00000397643 HTN1P15515 57 aa11.07□□□□□ -0.64
CUX2-202ENST00000397643 CDKN1BP46527 198 aa11.07□□□□□ -0.64
CUX2-202ENST00000397643 TMEM183BQ1AE95 376 aa11.07□□□□□ -0.64
CUX2-202ENST00000397643 ZNF493Q6ZR52 646 aa11.07□□□□□ -0.64
CUX2-202ENST00000397643 PRNTQ86SH4 94 aa11.07□□□□□ -0.64
CUX2-202ENST00000397643 FAM19A4Q96LR4 140 aa11.07□□□□□ -0.64
CUX2-202ENST00000397643 SGK494Q96LW2 274 aa11.07□□□□□ -0.64
CUX2-202ENST00000397643 SRRM2Q9UQ35 2752 aaKnown RBP11.06□□□□□ -0.64
CUX2-202ENST00000397643 TRBV6-1A0A0K0K1D8 114 aa11.06□□□□□ -0.64
CUX2-202ENST00000397643 TMEM250H0YL14 139 aa11.06□□□□□ -0.64
CUX2-202ENST00000397643 IGLV2-11P01706 119 aa11.06□□□□□ -0.64
CUX2-202ENST00000397643 CRISP2P16562 243 aa11.06□□□□□ -0.64
CUX2-202ENST00000397643 SAPCD1Q5SSQ6 148 aa11.06□□□□□ -0.64
CUX2-202ENST00000397643 SMDT1Q9H4I9 107 aa11.06□□□□□ -0.64
CUX2-202ENST00000397643 H3BNG1 76 aa11.05□□□□□ -0.64
CUX2-202ENST00000397643 J3KRW8 73 aa11.05□□□□□ -0.64
CUX2-202ENST00000397643 GPX1P07203 203 aa11.05□□□□□ -0.64
CUX2-202ENST00000397643 KIR3DS1Q14943 382 aa11.05□□□□□ -0.64
CUX2-202ENST00000397643 Q86TA4 180 aa11.05□□□□□ -0.64
CUX2-202ENST00000397643 TREM1Q9NP99 234 aa11.05□□□□□ -0.64
CUX2-202ENST00000397643 ZFP30Q9Y2G7 519 aa11.05□□□□□ -0.64
CUX2-202ENST00000397643 RAB19A4D1S5 217 aa11.04□□□□□ -0.64
CUX2-202ENST00000397643 RPL35P42766 123 aaKnown RBP11.04□□□□□ -0.64
CUX2-202ENST00000397643 ZFAND2AQ8N6M9 145 aa11.04□□□□□ -0.64
CUX2-202ENST00000397643 PGPEP1Q9NXJ5 209 aa11.04□□□□□ -0.64
CUX2-202ENST00000397643 KLLNB2CW77 178 aa11.03□□□□□ -0.64
CUX2-202ENST00000397643 H7BYZ3 331 aa11.03□□□□□ -0.64
CUX2-202ENST00000397643 SRP19P09132 144 aaKnown RBP11.03□□□□□ -0.64
CUX2-202ENST00000397643 RNASE4P34096 147 aaKnown RBP11.03□□□□□ -0.64
CUX2-202ENST00000397643 CEBPGP53567 150 aa11.03□□□□□ -0.64
CUX2-202ENST00000397643 GFI1BQ5VTD9 330 aa11.03□□□□□ -0.64
CUX2-202ENST00000397643 CDPF1Q6NVV7 123 aa11.03□□□□□ -0.64
CUX2-202ENST00000397643 BAGE2Q86Y30 109 aa11.03□□□□□ -0.64
CUX2-202ENST00000397643 TVP23CQ96ET8 276 aa11.03□□□□□ -0.64
CUX2-202ENST00000397643 GAGE12BA1L429 117 aa11.02□□□□□ -0.65
CUX2-202ENST00000397643 C7orf71A4D174 169 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 265.1 ms