RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CEND1Q8N111 149 aa9.69□□□□□ -0.86
SHMT1-205ENST00000395684 ZFYVE26Q68DK2 2539 aa9.69□□□□□ -0.86
SHMT1-205ENST00000395684 A0A087WX48 190 aa9.69□□□□□ -0.86
SHMT1-205ENST00000395684 TRBV7-1A0A0A6YYK4 115 aa9.69□□□□□ -0.86
SHMT1-205ENST00000395684 SRSF1Q07955 248 aaKnown RBP eCLIP9.69□□□□□ -0.86
SHMT1-205ENST00000395684 C20orf173Q96LM9 149 aa9.69□□□□□ -0.86
SHMT1-205ENST00000395684 HIF1ANQ9NWT6 349 aa9.69□□□□□ -0.86
SHMT1-205ENST00000395684 NHP2Q9NX24 153 aaKnown RBP9.69□□□□□ -0.86
SHMT1-205ENST00000395684 J3KRW8 73 aa9.68□□□□□ -0.86
SHMT1-205ENST00000395684 C16orf92Q96LL3 132 aa9.68□□□□□ -0.86
SHMT1-205ENST00000395684 LINC00527Q9UJ94 153 aa9.68□□□□□ -0.86
SHMT1-205ENST00000395684 SPTBN1Q01082 2364 aaKnown RBP9.68□□□□□ -0.86
SHMT1-205ENST00000395684 HLA-DRB4P13762 266 aa9.68□□□□□ -0.86
SHMT1-205ENST00000395684 C5orf56Q8N8D9 126 aa9.68□□□□□ -0.86
SHMT1-205ENST00000395684 HLA-DRB4X5D2U9 266 aa9.68□□□□□ -0.86
SHMT1-205ENST00000395684 ATP5G2Q06055 141 aa9.67□□□□□ -0.86
SHMT1-205ENST00000395684 TMEM219Q86XT9 240 aa9.67□□□□□ -0.86
SHMT1-205ENST00000395684 ITLN2Q8WWU7 325 aaPredicted RBP9.67□□□□□ -0.86
SHMT1-205ENST00000395684 DEFB1P60022 68 aa9.66□□□□□ -0.86
SHMT1-205ENST00000395684 GLMPQ8WWB7 406 aa9.66□□□□□ -0.86
SHMT1-205ENST00000395684 SMIM2Q9BVW6 85 aa9.66□□□□□ -0.86
SHMT1-205ENST00000395684 VPS13CQ709C8 3753 aa9.66□□□□□ -0.86
SHMT1-205ENST00000395684 EPG5Q9HCE0 2579 aa9.66□□□□□ -0.86
SHMT1-205ENST00000395684 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.66□□□□□ -0.86
SHMT1-205ENST00000395684 NPFFO15130 113 aa9.66□□□□□ -0.86
SHMT1-205ENST00000395684 LMO4P61968 165 aa9.66□□□□□ -0.86
SHMT1-205ENST00000395684 GPHB5Q86YW7 130 aa9.66□□□□□ -0.86
SHMT1-205ENST00000395684 MRAP2Q96G30 205 aa9.66□□□□□ -0.86
SHMT1-205ENST00000395684 KLK15Q9H2R5 256 aa9.66□□□□□ -0.86
SHMT1-205ENST00000395684 AKAP6Q13023 2319 aa9.65□□□□□ -0.86
SHMT1-205ENST00000395684 M0R381 172 aa9.65□□□□□ -0.86
SHMT1-205ENST00000395684 UNQ9165/PRO28630Q6UXU0 137 aa9.65□□□□□ -0.86
SHMT1-205ENST00000395684 ZFAND2AQ8N6M9 145 aa9.65□□□□□ -0.86
SHMT1-205ENST00000395684 BPESC1Q9GZL8 116 aa9.65□□□□□ -0.86
SHMT1-205ENST00000395684 CELSR1Q9NYQ6 3014 aa9.65□□□□□ -0.86
SHMT1-205ENST00000395684 PKD1L2Q7Z442 2459 aa9.65□□□□□ -0.86
SHMT1-205ENST00000395684 E9PLD3 99 aa9.65□□□□□ -0.87
SHMT1-205ENST00000395684 PLNP26678 52 aa9.65□□□□□ -0.87
SHMT1-205ENST00000395684 KLRB1Q12918 225 aa9.65□□□□□ -0.87
SHMT1-205ENST00000395684 RASL10AQ92737 203 aa9.65□□□□□ -0.87
SHMT1-205ENST00000395684 COL6A6A6NMZ7 2263 aa9.64□□□□□ -0.87
SHMT1-205ENST00000395684 IGLL5B9A064 214 aa9.64□□□□□ -0.87
SHMT1-205ENST00000395684 F8VRH5 84 aa9.64□□□□□ -0.87
SHMT1-205ENST00000395684 TRBV12-3P01733 135 aa9.64□□□□□ -0.87
SHMT1-205ENST00000395684 RPL39LQ96EH5 51 aaKnown RBP9.64□□□□□ -0.87
SHMT1-205ENST00000395684 TRAV12-1A0A0B4J245 112 aa9.64□□□□□ -0.87
SHMT1-205ENST00000395684 TRAV41A0A0B4J266 112 aa9.64□□□□□ -0.87
SHMT1-205ENST00000395684 TEX48A0A1B0GUV7 120 aa9.64□□□□□ -0.87
SHMT1-205ENST00000395684 H7C1H1 209 aa9.64□□□□□ -0.87
SHMT1-205ENST00000395684 SUMO2P61956 95 aaKnown RBP9.64□□□□□ -0.87
SHMT1-205ENST00000395684 RPL24P83731 157 aaKnown RBP9.64□□□□□ -0.87
SHMT1-205ENST00000395684 C9orf139Q6ZV77 190 aa9.64□□□□□ -0.87
SHMT1-205ENST00000395684 LENEPQ9Y5L5 61 aa9.64□□□□□ -0.87
SHMT1-205ENST00000395684 AGRNO00468 2067 aa9.64□□□□□ -0.87
SHMT1-205ENST00000395684 IGHV3OR16-10A0A075B7F0 116 aa9.63□□□□□ -0.87
SHMT1-205ENST00000395684 C12orf74Q32Q52 190 aa9.63□□□□□ -0.87
SHMT1-205ENST00000395684 C19orf54Q5BKX5 351 aa9.63□□□□□ -0.87
SHMT1-205ENST00000395684 C14orf178Q8N769 122 aaPredicted RBP9.63□□□□□ -0.87
SHMT1-205ENST00000395684 UBTD1Q9HAC8 227 aa9.63□□□□□ -0.87
SHMT1-205ENST00000395684 ARL3P36405 182 aa9.63□□□□□ -0.87
SHMT1-205ENST00000395684 TAL2Q16559 108 aa9.63□□□□□ -0.87
SHMT1-205ENST00000395684 TOMM6Q96B49 74 aa9.63□□□□□ -0.87
SHMT1-205ENST00000395684 LINC00477Q96M19 166 aa9.63□□□□□ -0.87
SHMT1-205ENST00000395684 SCGB3A1Q96QR1 104 aa9.63□□□□□ -0.87
SHMT1-205ENST00000395684 RNF223E7ERA6 249 aa9.62□□□□□ -0.87
SHMT1-205ENST00000395684 ORMDL2Q53FV1 153 aa9.62□□□□□ -0.87
SHMT1-205ENST00000395684 FOXI2Q6ZQN5 318 aa9.62□□□□□ -0.87
SHMT1-205ENST00000395684 NEXN-AS1Q8NBZ9 246 aa9.62□□□□□ -0.87
SHMT1-205ENST00000395684 HIST1H4GQ99525 98 aa9.62□□□□□ -0.87
SHMT1-205ENST00000395684 RAXQ9Y2V3 346 aa9.62□□□□□ -0.87
SHMT1-205ENST00000395684 CHTOPQ9Y3Y2 248 aaKnown RBP9.62□□□□□ -0.87
SHMT1-205ENST00000395684 TRBV7-3A0A075B6L6 115 aa9.62□□□□□ -0.87
SHMT1-205ENST00000395684 SOCS3O14543 225 aa9.62□□□□□ -0.87
SHMT1-205ENST00000395684 TRAV21A0A0B4J279 112 aa9.61□□□□□ -0.87
SHMT1-205ENST00000395684 S100A4P26447 101 aaKnown RBP9.61□□□□□ -0.87
SHMT1-205ENST00000395684 ANXA2RQ3ZCQ2 193 aa9.61□□□□□ -0.87
SHMT1-205ENST00000395684 ZNF479Q96JC4 524 aa9.61□□□□□ -0.87
SHMT1-205ENST00000395684 FAM223BA6NKX1 122 aa9.61□□□□□ -0.87
SHMT1-205ENST00000395684 F6UB75 175 aa9.61□□□□□ -0.87
SHMT1-205ENST00000395684 FAM223AQ8IWN6 122 aa9.61□□□□□ -0.87
SHMT1-205ENST00000395684 OR10J6PQ8NGY7 276 aa9.61□□□□□ -0.87
SHMT1-205ENST00000395684 C20orf78Q9BR46 151 aa9.61□□□□□ -0.87
SHMT1-205ENST00000395684 DPH3P1Q9H4G8 78 aa9.61□□□□□ -0.87
SHMT1-205ENST00000395684 MOB4Q9Y3A3 225 aa9.61□□□□□ -0.87
SHMT1-205ENST00000395684 PHLDA3Q9Y5J5 127 aa9.61□□□□□ -0.87
SHMT1-205ENST00000395684 MYMXA0A1B0GTQ4 84 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 GNRH2O43555 120 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 WFDC2Q14508 124 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 ATP6V0BQ99437 205 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 OR11H12B2RN74 326 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 TMEM238C9JI98 176 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 H3BMG7 143 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 ASIPP42127 132 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 AMTNQ6UX39 209 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 C2orf66Q6UXQ4 117 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 OR11H1Q8NG94 326 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 OR11H2Q8NH07 326 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 BAALCQ8WXS3 180 aa9.6□□□□□ -0.87
SHMT1-205ENST00000395684 OVOL1O14753 267 aa9.59□□□□□ -0.87
SHMT1-205ENST00000395684 SLC25A16P16260 332 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms