RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 ASIPP42127 132 aa7.61□□□□□ -1.19
COL17A1-203ENST00000393211 EFNA4P52798 201 aa7.61□□□□□ -1.19
COL17A1-203ENST00000393211 RIPPLY3P57055 190 aa7.61□□□□□ -1.19
COL17A1-203ENST00000393211 ZFAND2AQ8N6M9 145 aa7.61□□□□□ -1.19
COL17A1-203ENST00000393211 POM121L12Q8N7R1 296 aa7.61□□□□□ -1.19
COL17A1-203ENST00000393211 MOB4Q9Y3A3 225 aa7.61□□□□□ -1.19
COL17A1-203ENST00000393211 ARHGAP32A7KAX9 2087 aa7.61□□□□□ -1.19
COL17A1-203ENST00000393211 ACACAQ13085 2346 aa7.61□□□□□ -1.19
COL17A1-203ENST00000393211 TRAV41A0A0B4J266 112 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 K7ERJ3 54 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 RPL24P83731 157 aaKnown RBP7.6□□□□□ -1.19
COL17A1-203ENST00000393211 RRN3P1Q2M238 152 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 PAPPA-AS1Q5QFB9 102 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 RASL10AQ92737 203 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 FAM19A4Q96LR4 140 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 DMXL1Q9Y485 3027 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 IGHV1-69DA0A0B4J2H0 117 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 TEX48A0A1B0GUV7 120 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 TMEM238LA0A1B0GVL6 79 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 A6NJY4 79 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 SOCS3O14543 225 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 NXPH4O95158 308 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 ARL3P36405 182 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 LMO4P61968 165 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 FOXC1Q12948 553 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 CDSNQ15517 529 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 USMG5Q96IX5 58 aa7.6□□□□□ -1.19
COL17A1-203ENST00000393211 ANKRD11Q6UB99 2663 aaPredicted RBP7.59□□□□□ -1.19
COL17A1-203ENST00000393211 MAP1BP46821 2468 aaKnown RBP7.59□□□□□ -1.19
COL17A1-203ENST00000393211 IGHV3OR16-13A0A075B7E8 117 aa7.59□□□□□ -1.19
COL17A1-203ENST00000393211 IGHV3-74A0A0B4J1X5 117 aa7.59□□□□□ -1.19
COL17A1-203ENST00000393211 LINC01548A6NM66 108 aa7.59□□□□□ -1.19
COL17A1-203ENST00000393211 S100A4P26447 101 aaKnown RBP7.59□□□□□ -1.19
COL17A1-203ENST00000393211 PRR9Q5T870 116 aa7.59□□□□□ -1.19
COL17A1-203ENST00000393211 C20orf173Q96LM9 149 aa7.59□□□□□ -1.19
COL17A1-203ENST00000393211 SPANXB1Q9NS25 103 aaPredicted RBP7.59□□□□□ -1.19
COL17A1-203ENST00000393211 RAXQ9Y2V3 346 aa7.59□□□□□ -1.19
COL17A1-203ENST00000393211 PHLDA3Q9Y5J5 127 aa7.59□□□□□ -1.19
COL17A1-203ENST00000393211 ANKHD1Q8IWZ3 2542 aaKnown RBP7.59□□□□□ -1.19
COL17A1-203ENST00000393211 IGHV4OR15-8A0A075B7B6 117 aa7.58□□□□□ -1.2
COL17A1-203ENST00000393211 A0A087WW49 117 aa7.58□□□□□ -1.2
COL17A1-203ENST00000393211 HOXA3O43365 443 aaPredicted RBP7.58□□□□□ -1.2
COL17A1-203ENST00000393211 IGF1P05019 195 aa7.58□□□□□ -1.2
COL17A1-203ENST00000393211 CD300EQ496F6 205 aaPredicted RBP7.58□□□□□ -1.2
COL17A1-203ENST00000393211 SAMD13Q5VXD3 122 aa7.58□□□□□ -1.2
COL17A1-203ENST00000393211 C2orf66Q6UXQ4 117 aa7.58□□□□□ -1.2
COL17A1-203ENST00000393211 BAALCQ8WXS3 180 aa7.58□□□□□ -1.2
COL17A1-203ENST00000393211 ZNF292O60281 2723 aa7.57□□□□□ -1.2
COL17A1-203ENST00000393211 IGHV3-49A0A0A0MS15 119 aa7.57□□□□□ -1.2
COL17A1-203ENST00000393211 LGALS1P09382 135 aaKnown RBP7.57□□□□□ -1.2
COL17A1-203ENST00000393211 GAGE13Q4V321 117 aa7.57□□□□□ -1.2
COL17A1-203ENST00000393211 GPHB5Q86YW7 130 aa7.57□□□□□ -1.2
COL17A1-203ENST00000393211 SIGMAR1Q99720 223 aa7.57□□□□□ -1.2
COL17A1-203ENST00000393211 RIF1Q5UIP0 2472 aaKnown RBP7.57□□□□□ -1.2
COL17A1-203ENST00000393211 ZZEF1O43149 2961 aa7.57□□□□□ -1.2
COL17A1-203ENST00000393211 GVINP1Q7Z2Y8 2422 aa7.57□□□□□ -1.2
COL17A1-203ENST00000393211 RNF223E7ERA6 249 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 ANXA2RQ3ZCQ2 193 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 LYRM7Q5U5X0 104 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 TMEM141Q96I45 108 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 SPATA25Q9BR10 227 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 TPRP12270 2363 aaKnown RBP7.56□□□□□ -1.2
COL17A1-203ENST00000393211 PRSS29PA6NIE9 313 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 HERVK_113P61574 105 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 WFDC2Q14508 124 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 Q6ZQT7 251 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 C14orf178Q8N769 122 aaPredicted RBP7.56□□□□□ -1.2
COL17A1-203ENST00000393211 ATP6V0E2Q8NHE4 81 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 PRADC1Q9BSG0 188 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 PRO0461Q9UI25 63 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 CYSLTR1Q9Y271 337 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 SELENOKQ9Y6D0 94 aa7.56□□□□□ -1.2
COL17A1-203ENST00000393211 PIEZO2Q9H5I5 2752 aa7.55□□□□□ -1.2
COL17A1-203ENST00000393211 BOD1L1Q8NFC6 3051 aa7.55□□□□□ -1.2
COL17A1-203ENST00000393211 AKAP13Q12802 2813 aa7.55□□□□□ -1.2
COL17A1-203ENST00000393211 CFAP47Q6ZTR5 3102 aa7.55□□□□□ -1.2
COL17A1-203ENST00000393211 GAGE12HA6NDE8 117 aa7.55□□□□□ -1.2
COL17A1-203ENST00000393211 H3BMG7 143 aa7.55□□□□□ -1.2
COL17A1-203ENST00000393211 RNASE3P12724 160 aaKnown RBP7.55□□□□□ -1.2
COL17A1-203ENST00000393211 COX6B1P14854 86 aa7.55□□□□□ -1.2
COL17A1-203ENST00000393211 SCGB2A2Q13296 93 aa7.55□□□□□ -1.2
COL17A1-203ENST00000393211 RPL39LQ96EH5 51 aaKnown RBP7.55□□□□□ -1.2
COL17A1-203ENST00000393211 MGAQ8IWI9 3026 aa7.55□□□□□ -1.2
COL17A1-203ENST00000393211 ZNF815PA8K554 130 aa7.54□□□□□ -1.2
COL17A1-203ENST00000393211 VCYO14598 125 aa7.54□□□□□ -1.2
COL17A1-203ENST00000393211 IGHV1-69P01742 117 aa7.54□□□□□ -1.2
COL17A1-203ENST00000393211 MGPP08493 103 aa7.54□□□□□ -1.2
COL17A1-203ENST00000393211 RNASE4P34096 147 aaKnown RBP7.54□□□□□ -1.2
COL17A1-203ENST00000393211 UBE2D1P51668 147 aa7.54□□□□□ -1.2
COL17A1-203ENST00000393211 MORN3Q6PF18 240 aaPredicted RBP7.54□□□□□ -1.2
COL17A1-203ENST00000393211 TIMM17AQ99595 171 aa7.54□□□□□ -1.2
COL17A1-203ENST00000393211 BPESC1Q9GZL8 116 aa7.54□□□□□ -1.2
COL17A1-203ENST00000393211 KIF25-AS1Q9Y6Z4 181 aa7.54□□□□□ -1.2
COL17A1-203ENST00000393211 A0A1W2PPR1 153 aa7.53□□□□□ -1.2
COL17A1-203ENST00000393211 KLLNB2CW77 178 aa7.53□□□□□ -1.2
COL17A1-203ENST00000393211 K7EMT4 169 aa7.53□□□□□ -1.2
COL17A1-203ENST00000393211 CIDEAO60543 219 aa7.53□□□□□ -1.2
COL17A1-203ENST00000393211 IGHG2P01859 326 aa7.53□□□□□ -1.2
COL17A1-203ENST00000393211 ID1P41134 155 aa7.53□□□□□ -1.2
COL17A1-203ENST00000393211 POLR2KP53803 58 aaKnown RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms