RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 MRPL53Q96EL3 112 aaKnown RBP10.15□□□□□ -0.78
CCDC3-202ENST00000378839 NDUFA4O00483 81 aa10.14□□□□□ -0.79
CCDC3-202ENST00000378839 RPL24P83731 157 aaKnown RBP10.14□□□□□ -0.79
CCDC3-202ENST00000378839 SRSF1Q07955 248 aaKnown RBP eCLIP10.14□□□□□ -0.79
CCDC3-202ENST00000378839 WFDC12Q8WWY7 111 aa10.14□□□□□ -0.79
CCDC3-202ENST00000378839 AP1S3Q96PC3 154 aa10.14□□□□□ -0.79
CCDC3-202ENST00000378839 CSPG4Q6UVK1 2322 aa10.14□□□□□ -0.79
CCDC3-202ENST00000378839 K7ERU9 68 aa10.14□□□□□ -0.79
CCDC3-202ENST00000378839 OR1N2Q8NGR9 330 aa10.14□□□□□ -0.79
CCDC3-202ENST00000378839 ATP6V0BQ99437 205 aa10.14□□□□□ -0.79
CCDC3-202ENST00000378839 ST20Q9HBF5 79 aa10.14□□□□□ -0.79
CCDC3-202ENST00000378839 CENPEQ02224 2701 aa10.14□□□□□ -0.79
CCDC3-202ENST00000378839 IGKV3-7A0A075B6H7 116 aa10.14□□□□□ -0.79
CCDC3-202ENST00000378839 TRAV26-2A0A0B4J265 109 aa10.14□□□□□ -0.79
CCDC3-202ENST00000378839 GAGE10A6NGK3 116 aa10.14□□□□□ -0.79
CCDC3-202ENST00000378839 HSBP1L1C9JCN9 74 aa10.13□□□□□ -0.79
CCDC3-202ENST00000378839 HIST1H1AQ02539 215 aaPredicted RBP10.13□□□□□ -0.79
CCDC3-202ENST00000378839 BVES-AS1Q5T3Y7 98 aa10.13□□□□□ -0.79
CCDC3-202ENST00000378839 ZFAND2AQ8N6M9 145 aa10.13□□□□□ -0.79
CCDC3-202ENST00000378839 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.13□□□□□ -0.79
CCDC3-202ENST00000378839 H3BUT2 72 aa10.13□□□□□ -0.79
CCDC3-202ENST00000378839 K7EMI3 77 aa10.13□□□□□ -0.79
CCDC3-202ENST00000378839 IGHV4-59P01825 116 aa10.13□□□□□ -0.79
CCDC3-202ENST00000378839 SRD5A1P18405 259 aa10.13□□□□□ -0.79
CCDC3-202ENST00000378839 SLC25A34Q6PIV7 304 aa10.13□□□□□ -0.79
CCDC3-202ENST00000378839 CLUHP3Q96NS8 147 aa10.13□□□□□ -0.79
CCDC3-202ENST00000378839 MXRA5Q9NR99 2828 aa10.13□□□□□ -0.79
CCDC3-202ENST00000378839 BRI3O95415 125 aa10.12□□□□□ -0.79
CCDC3-202ENST00000378839 ZNF462Q96JM2 2506 aa10.12□□□□□ -0.79
CCDC3-202ENST00000378839 B4DSR2 109 aa10.12□□□□□ -0.79
CCDC3-202ENST00000378839 TNFRSF6BO95407 300 aa10.12□□□□□ -0.79
CCDC3-202ENST00000378839 DEFB112Q30KQ8 113 aa10.12□□□□□ -0.79
CCDC3-202ENST00000378839 EPG5Q9HCE0 2579 aa10.12□□□□□ -0.79
CCDC3-202ENST00000378839 C7orf71A4D174 169 aa10.12□□□□□ -0.79
CCDC3-202ENST00000378839 USMG5Q96IX5 58 aa10.12□□□□□ -0.79
CCDC3-202ENST00000378839 GTSF1LQ9H1H1 148 aa10.12□□□□□ -0.79
CCDC3-202ENST00000378839 USP9YO00507 2555 aaPredicted RBP10.11□□□□□ -0.79
CCDC3-202ENST00000378839 LINC01546A6NGU7 62 aa10.11□□□□□ -0.79
CCDC3-202ENST00000378839 SMAGPQ0VAQ4 97 aa10.11□□□□□ -0.79
CCDC3-202ENST00000378839 C9orf139Q6ZV77 190 aa10.11□□□□□ -0.79
CCDC3-202ENST00000378839 MTURNQ8N3F0 131 aa10.11□□□□□ -0.79
CCDC3-202ENST00000378839 NPFFR1Q9GZQ6 430 aa10.11□□□□□ -0.79
CCDC3-202ENST00000378839 UBR5O95071 2799 aaPredicted RBP10.11□□□□□ -0.79
CCDC3-202ENST00000378839 IGLV2-18A0A075B6J9 118 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 H3BUA1 57 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 HBDP02042 147 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 FAM19A4Q96LR4 140 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 RHPN1-AS1Q9BWJ2 59 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 H3BVH4 76 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 PPBPP02775 128 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 CACNG7P62955 275 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 NRACQ8N912 160 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 PRSS47A8MTI9 375 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 KRTAP10-9P60411 292 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 C2orf91Q6ZV80 131 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 C18orf15Q96N68 181 aa10.1□□□□□ -0.79
CCDC3-202ENST00000378839 CUBNO60494 3623 aa10.09□□□□□ -0.79
CCDC3-202ENST00000378839 RPL11P62913 178 aaKnown RBP10.09□□□□□ -0.79
CCDC3-202ENST00000378839 DKK2Q9UBU2 259 aa10.09□□□□□ -0.79
CCDC3-202ENST00000378839 FGF6P10767 208 aa10.09□□□□□ -0.79
CCDC3-202ENST00000378839 PSMB8P28062 276 aa10.08□□□□□ -0.8
CCDC3-202ENST00000378839 ANKRD17O75179 2603 aaKnown RBP10.08□□□□□ -0.8
CCDC3-202ENST00000378839 IGHV4-4A0A075B6R2 117 aa10.08□□□□□ -0.8
CCDC3-202ENST00000378839 A1L4Q6 167 aa10.08□□□□□ -0.8
CCDC3-202ENST00000378839 LEPP41159 167 aa10.08□□□□□ -0.8
CCDC3-202ENST00000378839 IFI27L1Q96BM0 104 aa10.08□□□□□ -0.8
CCDC3-202ENST00000378839 MAP1LC3AQ9H492 121 aa10.08□□□□□ -0.8
CCDC3-202ENST00000378839 AKAP9Q99996 3911 aa10.07□□□□□ -0.8
CCDC3-202ENST00000378839 MS4A6AQ9H2W1 248 aa10.07□□□□□ -0.8
CCDC3-202ENST00000378839 UFC1Q9Y3C8 167 aa10.07□□□□□ -0.8
CCDC3-202ENST00000378839 GNRH2O43555 120 aa10.07□□□□□ -0.8
CCDC3-202ENST00000378839 COX8AP10176 69 aa10.07□□□□□ -0.8
CCDC3-202ENST00000378839 LGALS9BQ3B8N2 356 aa10.07□□□□□ -0.8
CCDC3-202ENST00000378839 LGALS9CQ6DKI2 356 aa10.07□□□□□ -0.8
CCDC3-202ENST00000378839 OR2K2Q8NGT1 345 aa10.07□□□□□ -0.8
CCDC3-202ENST00000378839 SMPXQ9UHP9 88 aa10.07□□□□□ -0.8
CCDC3-202ENST00000378839 LRRK2Q5S007 2527 aa10.06□□□□□ -0.8
CCDC3-202ENST00000378839 RNASE4P34096 147 aaKnown RBP10.06□□□□□ -0.8
CCDC3-202ENST00000378839 ANXA2RQ3ZCQ2 193 aa10.06□□□□□ -0.8
CCDC3-202ENST00000378839 LINC00477Q96M19 166 aa10.06□□□□□ -0.8
CCDC3-202ENST00000378839 DEFB125Q8N687 156 aa10.06□□□□□ -0.8
CCDC3-202ENST00000378839 LINC01356Q8N9X3 169 aa10.06□□□□□ -0.8
CCDC3-202ENST00000378839 OR10J6PQ8NGY7 276 aa10.06□□□□□ -0.8
CCDC3-202ENST00000378839 JMJD8Q96S16 334 aa10.06□□□□□ -0.8
CCDC3-202ENST00000378839 DAZ1Q9NQZ3 744 aaKnown RBP10.06□□□□□ -0.8
CCDC3-202ENST00000378839 PEF1Q9UBV8 284 aaKnown RBP10.06□□□□□ -0.8
CCDC3-202ENST00000378839 FAM208BQ5VWN6 2430 aa10.06□□□□□ -0.8
CCDC3-202ENST00000378839 OVOL1O14753 267 aa10.05□□□□□ -0.8
CCDC3-202ENST00000378839 PLA2G2AP14555 144 aa10.05□□□□□ -0.8
CCDC3-202ENST00000378839 FCER1GP30273 86 aa10.05□□□□□ -0.8
CCDC3-202ENST00000378839 SPANXN1Q5VSR9 72 aa10.05□□□□□ -0.8
CCDC3-202ENST00000378839 DCANP1Q8TF63 244 aa10.05□□□□□ -0.8
CCDC3-202ENST00000378839 TMEM158Q8WZ71 300 aa10.05□□□□□ -0.8
CCDC3-202ENST00000378839 LENEPQ9Y5L5 61 aa10.05□□□□□ -0.8
CCDC3-202ENST00000378839 TGFAP01135 160 aa10.05□□□□□ -0.8
CCDC3-202ENST00000378839 A0A0G2JLM5 398 aa10.04□□□□□ -0.8
CCDC3-202ENST00000378839 CD5LO43866 347 aa10.04□□□□□ -0.8
CCDC3-202ENST00000378839 C12orf54Q6X4T0 127 aa10.04□□□□□ -0.8
CCDC3-202ENST00000378839 APRG1Q8IVJ8 170 aa10.04□□□□□ -0.8
CCDC3-202ENST00000378839 Q8N8P6 123 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms