RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 CEP295Q9C0D2 2601 aa16.17■□□□□ 0.18
UPF3A-202ENST00000375299 H3BVH4 76 aa16.17■□□□□ 0.18
UPF3A-202ENST00000375299 C8orf86Q6ZUL3 223 aa16.17■□□□□ 0.18
UPF3A-202ENST00000375299 KLK9Q2XQG4 91 aa16.16■□□□□ 0.18
UPF3A-202ENST00000375299 ORMDL2Q53FV1 153 aa16.16■□□□□ 0.18
UPF3A-202ENST00000375299 KLK9Q9UKQ9 250 aa16.16■□□□□ 0.18
UPF3A-202ENST00000375299 FBXL19-AS1Q494R0 122 aa16.16■□□□□ 0.18
UPF3A-202ENST00000375299 CCDC140Q96MF4 163 aa16.16■□□□□ 0.18
UPF3A-202ENST00000375299 SCGB3A1Q96QR1 104 aa16.16■□□□□ 0.18
UPF3A-202ENST00000375299 SLC25A16P16260 332 aa16.15■□□□□ 0.18
UPF3A-202ENST00000375299 CLEC19AQ6UXS0 136 aa16.15■□□□□ 0.18
UPF3A-202ENST00000375299 MTURNQ8N3F0 131 aa16.15■□□□□ 0.18
UPF3A-202ENST00000375299 TOMM6Q96B49 74 aa16.15■□□□□ 0.18
UPF3A-202ENST00000375299 C1orf122Q6ZSJ8 110 aa16.15■□□□□ 0.18
UPF3A-202ENST00000375299 NEXN-AS1Q8NBZ9 246 aa16.15■□□□□ 0.18
UPF3A-202ENST00000375299 KLK15Q9H2R5 256 aa16.15■□□□□ 0.18
UPF3A-202ENST00000375299 IGHV3-49A0A0A0MS15 119 aa16.14■□□□□ 0.17
UPF3A-202ENST00000375299 CLEC2AQ6UVW9 174 aa16.14■□□□□ 0.17
UPF3A-202ENST00000375299 METTL26Q96S19 204 aa16.14■□□□□ 0.17
UPF3A-202ENST00000375299 PTPRZ1P23471 2315 aaPredicted RBP16.14■□□□□ 0.17
UPF3A-202ENST00000375299 ATP6V0E1O15342 81 aa16.14■□□□□ 0.17
UPF3A-202ENST00000375299 LGALS1P09382 135 aaKnown RBP16.14■□□□□ 0.17
UPF3A-202ENST00000375299 CYSLTR1Q9Y271 337 aa16.14■□□□□ 0.17
UPF3A-202ENST00000375299 MORN3Q6PF18 240 aaPredicted RBP16.13■□□□□ 0.17
UPF3A-202ENST00000375299 HOXA3O43365 443 aaPredicted RBP16.13■□□□□ 0.17
UPF3A-202ENST00000375299 SUMO2P61956 95 aaKnown RBP16.13■□□□□ 0.17
UPF3A-202ENST00000375299 PRR9Q5T870 116 aa16.13■□□□□ 0.17
UPF3A-202ENST00000375299 RAXQ9Y2V3 346 aa16.13■□□□□ 0.17
UPF3A-202ENST00000375299 ANKHD1Q8IWZ3 2542 aaKnown RBP16.13■□□□□ 0.17
UPF3A-202ENST00000375299 PTPRQQ9UMZ3 2332 aa16.12■□□□□ 0.17
UPF3A-202ENST00000375299 RASL10AQ92737 203 aa16.12■□□□□ 0.17
UPF3A-202ENST00000375299 EEF1AKMT3Q96AZ1 226 aa16.12■□□□□ 0.17
UPF3A-202ENST00000375299 C20orf78Q9BR46 151 aa16.11■□□□□ 0.17
UPF3A-202ENST00000375299 CCL21O00585 134 aa16.11■□□□□ 0.17
UPF3A-202ENST00000375299 INSL3P51460 131 aa16.11■□□□□ 0.17
UPF3A-202ENST00000375299 CDSNQ15517 529 aa16.11■□□□□ 0.17
UPF3A-202ENST00000375299 U3KQE9 123 aa16.11■□□□□ 0.17
UPF3A-202ENST00000375299 NDUFS8O00217 210 aa16.1■□□□□ 0.17
UPF3A-202ENST00000375299 BAALCQ8WXS3 180 aa16.1■□□□□ 0.17
UPF3A-202ENST00000375299 PGPEP1Q9NXJ5 209 aa16.1■□□□□ 0.17
UPF3A-202ENST00000375299 RELNP78509 3460 aa16.1■□□□□ 0.17
UPF3A-202ENST00000375299 A0A1B0GV72 72 aa16.09■□□□□ 0.17
UPF3A-202ENST00000375299 C16orf92Q96LL3 132 aa16.09■□□□□ 0.17
UPF3A-202ENST00000375299 ATP6V0BQ99437 205 aa16.09■□□□□ 0.17
UPF3A-202ENST00000375299 PRADC1Q9BSG0 188 aa16.09■□□□□ 0.17
UPF3A-202ENST00000375299 SCGB2A2Q13296 93 aa16.09■□□□□ 0.17
UPF3A-202ENST00000375299 DPH3P1Q9H4G8 78 aa16.09■□□□□ 0.17
UPF3A-202ENST00000375299 LENEPQ9Y5L5 61 aa16.09■□□□□ 0.17
UPF3A-202ENST00000375299 ABCA4P78363 2273 aa16.09■□□□□ 0.17
UPF3A-202ENST00000375299 G3V318 75 aa16.08■□□□□ 0.17
UPF3A-202ENST00000375299 M0R381 172 aa16.08■□□□□ 0.17
UPF3A-202ENST00000375299 LCNL1Q6ZST4 164 aa16.08■□□□□ 0.17
UPF3A-202ENST00000375299 RPL39LQ96EH5 51 aaKnown RBP16.08■□□□□ 0.17
UPF3A-202ENST00000375299 WNK2Q9Y3S1 2297 aa16.08■□□□□ 0.16
UPF3A-202ENST00000375299 C2orf66Q6UXQ4 117 aa16.08■□□□□ 0.16
UPF3A-202ENST00000375299 TRBV7-1A0A0A6YYK4 115 aa16.07■□□□□ 0.16
UPF3A-202ENST00000375299 CENPVL3A0A0U1RRI6 287 aa16.07■□□□□ 0.16
UPF3A-202ENST00000375299 TMEM238LA0A1B0GVL6 79 aa16.07■□□□□ 0.16
UPF3A-202ENST00000375299 A6NJY4 79 aa16.07■□□□□ 0.16
UPF3A-202ENST00000375299 APOMO95445 188 aa16.07■□□□□ 0.16
UPF3A-202ENST00000375299 SIRPDQ9H106 197 aa16.07■□□□□ 0.16
UPF3A-202ENST00000375299 MRPL16Q9NX20 251 aaKnown RBP16.07■□□□□ 0.16
UPF3A-202ENST00000375299 ZNF815PA8K554 130 aa16.07■□□□□ 0.16
UPF3A-202ENST00000375299 ZFP36P26651 326 aaKnown RBP16.07■□□□□ 0.16
UPF3A-202ENST00000375299 C9orf139Q6ZV77 190 aa16.07■□□□□ 0.16
UPF3A-202ENST00000375299 RNF223E7ERA6 249 aa16.06■□□□□ 0.16
UPF3A-202ENST00000375299 IGF1P05019 195 aa16.06■□□□□ 0.16
UPF3A-202ENST00000375299 PRSS29PA6NIE9 313 aa16.06■□□□□ 0.16
UPF3A-202ENST00000375299 J3KRW8 73 aa16.06■□□□□ 0.16
UPF3A-202ENST00000375299 CFAP126Q5VTH2 177 aa16.06■□□□□ 0.16
UPF3A-202ENST00000375299 C11orf71Q6IPW1 123 aa16.06■□□□□ 0.16
UPF3A-202ENST00000375299 ATP6V0E2Q8NHE4 81 aa16.06■□□□□ 0.16
UPF3A-202ENST00000375299 ITLN2Q8WWU7 325 aaPredicted RBP16.06■□□□□ 0.16
UPF3A-202ENST00000375299 DLX4Q92988 240 aaPredicted RBP16.06■□□□□ 0.16
UPF3A-202ENST00000375299 C20orf173Q96LM9 149 aa16.06■□□□□ 0.16
UPF3A-202ENST00000375299 SPRY2O43597 315 aa16.05■□□□□ 0.16
UPF3A-202ENST00000375299 ATP5G2Q06055 141 aa16.05■□□□□ 0.16
UPF3A-202ENST00000375299 C14orf178Q8N769 122 aaPredicted RBP16.05■□□□□ 0.16
UPF3A-202ENST00000375299 C1QTNF4Q9BXJ3 329 aa16.05■□□□□ 0.16
UPF3A-202ENST00000375299 HRNRQ86YZ3 2850 aaPredicted RBP16.05■□□□□ 0.16
UPF3A-202ENST00000375299 LINC01549A6NIU2 74 aa16.05■□□□□ 0.16
UPF3A-202ENST00000375299 LINC01548A6NM66 108 aa16.05■□□□□ 0.16
UPF3A-202ENST00000375299 S100A4P26447 101 aaKnown RBP16.05■□□□□ 0.16
UPF3A-202ENST00000375299 UBE2D1P51668 147 aa16.05■□□□□ 0.16
UPF3A-202ENST00000375299 ADORA2A-AS1P86434 159 aa16.05■□□□□ 0.16
UPF3A-202ENST00000375299 PLEKHB2Q96CS7 222 aa16.05■□□□□ 0.16
UPF3A-202ENST00000375299 TRAV21A0A0B4J279 112 aa16.04■□□□□ 0.16
UPF3A-202ENST00000375299 COX6B1P14854 86 aa16.04■□□□□ 0.16
UPF3A-202ENST00000375299 FOXI1Q12951 378 aa16.04■□□□□ 0.16
UPF3A-202ENST00000375299 SCGB1D4Q6XE38 83 aa16.04■□□□□ 0.16
UPF3A-202ENST00000375299 ZFAND2AQ8N6M9 145 aa16.04■□□□□ 0.16
UPF3A-202ENST00000375299 SPOCK3Q9BQ16 436 aa16.04■□□□□ 0.16
UPF3A-202ENST00000375299 MGPP08493 103 aa16.04■□□□□ 0.16
UPF3A-202ENST00000375299 ASIPP42127 132 aa16.04■□□□□ 0.16
UPF3A-202ENST00000375299 SMCPP49901 116 aaPredicted RBP16.04■□□□□ 0.16
UPF3A-202ENST00000375299 GLMPQ8WWB7 406 aa16.04■□□□□ 0.16
UPF3A-202ENST00000375299 AJUBAQ96IF1 538 aa16.04■□□□□ 0.16
UPF3A-202ENST00000375299 LINC00477Q96M19 166 aa16.04■□□□□ 0.16
UPF3A-202ENST00000375299 PHLDA3Q9Y5J5 127 aa16.03■□□□□ 0.16
UPF3A-202ENST00000375299 TSPAN13O95857 204 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms