RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 ZNF726P1Q15940 193 aa12.24□□□□□ -0.45
COL5A1-201ENST00000371817 KIF26AQ9ULI4 1882 aaPredicted RBP12.24□□□□□ -0.45
COL5A1-201ENST00000371817 LYPD3O95274 346 aa12.24□□□□□ -0.45
COL5A1-201ENST00000371817 LINC01620Q4KN68 170 aa12.24□□□□□ -0.45
COL5A1-201ENST00000371817 HIGD2BQ4VC39 106 aa12.24□□□□□ -0.45
COL5A1-201ENST00000371817 PAX9P55771 341 aa12.24□□□□□ -0.45
COL5A1-201ENST00000371817 COL18A1P39060 1754 aa12.24□□□□□ -0.45
COL5A1-201ENST00000371817 IGHV4-28A0A0C4DH34 117 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 NDUFB1O75438 58 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 COX7B2Q8TF08 81 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 IGLV3-32A0A0A0MS00 114 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 FXYD2P54710 66 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 C20orf173Q96LM9 149 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 A4D1N5 150 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 Q6P435 159 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 TMEM14CQ9P0S9 112 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 TRBV10-2A0A0K0K1G8 114 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 C5orf67F2Z3F1 127 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 H3BT86 120 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 EFNA2O43921 213 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 LINC00643Q86TS7 51 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 SAP25Q8TEE9 199 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 TGFBR3LH3BV60 316 aa12.23□□□□□ -0.45
COL5A1-201ENST00000371817 SPINK13Q1W4C9 94 aa12.22□□□□□ -0.45
COL5A1-201ENST00000371817 KIAA1549LQ6ZVL6 1849 aa12.22□□□□□ -0.45
COL5A1-201ENST00000371817 IGHV1-46P01743 117 aa12.22□□□□□ -0.45
COL5A1-201ENST00000371817 IGHV1-18A0A0C4DH31 117 aa12.22□□□□□ -0.45
COL5A1-201ENST00000371817 MLANAQ16655 118 aa12.22□□□□□ -0.45
COL5A1-201ENST00000371817 OPRPNQ99935 248 aaPredicted RBP12.22□□□□□ -0.45
COL5A1-201ENST00000371817 TMEM61Q8N0U2 210 aa12.22□□□□□ -0.45
COL5A1-201ENST00000371817 C3orf22Q8N5N4 141 aa12.22□□□□□ -0.45
COL5A1-201ENST00000371817 MDS2Q8NDY4 140 aa12.21□□□□□ -0.45
COL5A1-201ENST00000371817 C11orf52Q96A22 123 aa12.21□□□□□ -0.45
COL5A1-201ENST00000371817 RNASE13Q5GAN3 156 aaKnown RBP12.21□□□□□ -0.45
COL5A1-201ENST00000371817 K7EN84 100 aa12.21□□□□□ -0.45
COL5A1-201ENST00000371817 C20orf204Q6ZNR8 217 aa12.21□□□□□ -0.46
COL5A1-201ENST00000371817 CD177Q8N6Q3 437 aa12.21□□□□□ -0.46
COL5A1-201ENST00000371817 COL5A3P25940 1745 aaPredicted RBP12.21□□□□□ -0.46
COL5A1-201ENST00000371817 TMEM256-PLSCR3K7ERE1 68 aa12.21□□□□□ -0.46
COL5A1-201ENST00000371817 PIP4P2Q8N4L2 257 aa12.21□□□□□ -0.46
COL5A1-201ENST00000371817 ZNRF2Q8NHG8 242 aa12.21□□□□□ -0.46
COL5A1-201ENST00000371817 ATP5EP56381 51 aaPredicted RBP12.2□□□□□ -0.46
COL5A1-201ENST00000371817 LINC00205P59089 165 aa12.2□□□□□ -0.46
COL5A1-201ENST00000371817 TRAV23DV6A0A075B6W5 121 aa12.2□□□□□ -0.46
COL5A1-201ENST00000371817 ZNF134P52741 427 aa12.2□□□□□ -0.46
COL5A1-201ENST00000371817 NSUN5P1Q3KNT7 163 aa12.2□□□□□ -0.46
COL5A1-201ENST00000371817 STPG1Q5TH74 334 aa12.2□□□□□ -0.46
COL5A1-201ENST00000371817 C9orf106Q8NAJ2 232 aa12.2□□□□□ -0.46
COL5A1-201ENST00000371817 LYPD6BQ8NI32 183 aa12.2□□□□□ -0.46
COL5A1-201ENST00000371817 C1orf195Q5TG92 126 aa12.2□□□□□ -0.46
COL5A1-201ENST00000371817 RNF152Q8N8N0 203 aa12.2□□□□□ -0.46
COL5A1-201ENST00000371817 THSD7AQ9UPZ6 1657 aa12.19□□□□□ -0.46
COL5A1-201ENST00000371817 IGHV3-38A0A0C4DH36 116 aa12.19□□□□□ -0.46
COL5A1-201ENST00000371817 ATP1A1-AS1Q5TC04 95 aa12.19□□□□□ -0.46
COL5A1-201ENST00000371817 TMEM178BH3BS89 294 aa12.19□□□□□ -0.46
COL5A1-201ENST00000371817 RNF166Q96A37 237 aaPredicted RBP12.19□□□□□ -0.46
COL5A1-201ENST00000371817 NDUFA4L2Q9NRX3 87 aa12.19□□□□□ -0.46
COL5A1-201ENST00000371817 GLI3P10071 1580 aa12.19□□□□□ -0.46
COL5A1-201ENST00000371817 LTAP01374 205 aa12.19□□□□□ -0.46
COL5A1-201ENST00000371817 C11orf44Q8N8P7 122 aa12.19□□□□□ -0.46
COL5A1-201ENST00000371817 KLK9Q9UKQ9 250 aa12.19□□□□□ -0.46
COL5A1-201ENST00000371817 Q71RC1 249 aaPredicted RBP12.19□□□□□ -0.46
COL5A1-201ENST00000371817 BUB3O43684 328 aa12.18□□□□□ -0.46
COL5A1-201ENST00000371817 UPK3BQ9BT76 320 aa12.18□□□□□ -0.46
COL5A1-201ENST00000371817 SND1-IT1Q9HBX3 110 aa12.18□□□□□ -0.46
COL5A1-201ENST00000371817 RNASE6Q93091 150 aaKnown RBP12.18□□□□□ -0.46
COL5A1-201ENST00000371817 PTH2Q96A98 100 aa12.18□□□□□ -0.46
COL5A1-201ENST00000371817 NUP210LQ5VU65 1888 aa12.18□□□□□ -0.46
COL5A1-201ENST00000371817 FXYD5Q96DB9 178 aa12.18□□□□□ -0.46
COL5A1-201ENST00000371817 SONP18583 2426 aaKnown RBP12.17□□□□□ -0.46
COL5A1-201ENST00000371817 TRBV12-3P01733 135 aa12.17□□□□□ -0.46
COL5A1-201ENST00000371817 ANGP03950 147 aaKnown RBP12.17□□□□□ -0.46
COL5A1-201ENST00000371817 CFHR3Q02985 330 aa12.17□□□□□ -0.46
COL5A1-201ENST00000371817 PRDM6Q9NQX0 595 aa12.17□□□□□ -0.46
COL5A1-201ENST00000371817 DSCAMO60469 2012 aa12.17□□□□□ -0.46
COL5A1-201ENST00000371817 FOXE3Q13461 319 aa12.17□□□□□ -0.46
COL5A1-201ENST00000371817 IGHV1-69DA0A0B4J2H0 117 aa12.17□□□□□ -0.46
COL5A1-201ENST00000371817 MT-ATP8P03928 68 aa12.16□□□□□ -0.46
COL5A1-201ENST00000371817 KLHL30-AS1Q8NEE0 82 aa12.16□□□□□ -0.46
COL5A1-201ENST00000371817 ANKRD39Q53RE8 183 aa12.16□□□□□ -0.46
COL5A1-201ENST00000371817 METRNQ9UJH8 293 aa12.16□□□□□ -0.46
COL5A1-201ENST00000371817 F5H768 121 aa12.16□□□□□ -0.46
COL5A1-201ENST00000371817 K7ERS5 55 aa12.16□□□□□ -0.46
COL5A1-201ENST00000371817 ASPHD1Q5U4P2 390 aa12.16□□□□□ -0.46
COL5A1-201ENST00000371817 ATG2AQ2TAZ0 1938 aa12.16□□□□□ -0.46
COL5A1-201ENST00000371817 XCL1P47992 114 aa12.15□□□□□ -0.46
COL5A1-201ENST00000371817 IL15RAQ13261 267 aa12.15□□□□□ -0.46
COL5A1-201ENST00000371817 C5orf24Q7Z6I8 188 aa12.15□□□□□ -0.46
COL5A1-201ENST00000371817 PDE6GP18545 87 aa12.15□□□□□ -0.46
COL5A1-201ENST00000371817 IGHV4-4A0A075B6R2 117 aa12.15□□□□□ -0.46
COL5A1-201ENST00000371817 FAM120AOSQ5T036 256 aa12.15□□□□□ -0.46
COL5A1-201ENST00000371817 TRAV4A0A0B4J268 109 aa12.15□□□□□ -0.46
COL5A1-201ENST00000371817 LYNX1G3V0Z9 82 aa12.15□□□□□ -0.46
COL5A1-201ENST00000371817 ETV2O00321 342 aaPredicted RBP12.15□□□□□ -0.46
COL5A1-201ENST00000371817 NDUFC1O43677 76 aa12.15□□□□□ -0.46
COL5A1-201ENST00000371817 WISP1O95388 367 aa12.15□□□□□ -0.46
COL5A1-201ENST00000371817 LYNX1P0DP58 116 aa12.15□□□□□ -0.46
COL5A1-201ENST00000371817 UBE2BP63146 152 aa12.15□□□□□ -0.46
COL5A1-201ENST00000371817 DEFB131AP59861 70 aa12.15□□□□□ -0.47
COL5A1-201ENST00000371817 CUL9Q8IWT3 2517 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms