RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 TREML4Q6UXN2 200 aa6.94□□□□□ -1.3
SYNE1-206ENST00000367253 NUP35Q8NFH5 326 aa6.94□□□□□ -1.3
SYNE1-206ENST00000367253 WDR83OSQ9Y284 106 aa6.94□□□□□ -1.3
SYNE1-206ENST00000367253 TRBV25-1A0A075B6N4 114 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 CFHR4Q92496 578 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 XCL2Q9UBD3 114 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 LY96Q9Y6Y9 160 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 IGKV1D-12P01611 117 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 CRYBA2P53672 197 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 IGHV3-53P01767 116 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 CD24P25063 80 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 BTCP35070 178 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 CARD19Q96LW7 228 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 SMIM2Q9BVW6 85 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 HEATR5BQ9P2D3 2071 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 IGKV1D-16P01601 117 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 PSMB8P28062 276 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 TRPT1Q86TN4 253 aaKnown RBP6.93□□□□□ -1.3
SYNE1-206ENST00000367253 TIMM21Q9BVV7 248 aa6.93□□□□□ -1.3
SYNE1-206ENST00000367253 PLXNA4Q9HCM2 1894 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 NHLRC4P0CG21 123 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-206ENST00000367253 UBE2D1P51668 147 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 PRIMA1Q86XR5 153 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 AGMATQ9BSE5 352 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 CRYGBP07316 175 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 FGFBP3Q8TAT2 258 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 ACYP1P07311 99 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 HLA-DRB4P13762 266 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 THAP8Q8NA92 274 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 HLA-DRB4X5D2U9 266 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 TCF20Q9UGU0 1960 aaKnown RBP6.92□□□□□ -1.3
SYNE1-206ENST00000367253 PCNX2A6NKB5 2137 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 NUPR2A6NF83 97 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 LY6G6DO95868 133 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 Q0VG73 95 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 LYZL4Q96KX0 146 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 S4R3C0 116 aa6.92□□□□□ -1.3
SYNE1-206ENST00000367253 BUB1B-PAK6H3BSN5 160 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 TIRAPP58753 221 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 ZNF876PQ49A33 203 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 CYTL1Q9NRR1 136 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 FREM1Q5H8C1 2179 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 USP17L23D6RBM5 183 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 H3BS24 57 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 COX8AP10176 69 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 C4orf26Q17RF5 130 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 FOXI2Q6ZQN5 318 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 SRCAPQ6ZRS2 3230 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 Q9HAA7 133 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 THADAQ6YHU6 1953 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 HIST2H2BCQ6DN03 193 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 HIST2H2BDQ6DRA6 164 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 RNF138Q8WVD3 245 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 NRTNQ99748 197 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 WFDC1Q9HC57 220 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 PRR14LQ5THK1 2151 aa6.91□□□□□ -1.3
SYNE1-206ENST00000367253 EGR2P11161 476 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-206ENST00000367253 IGHV1-24A0A0C4DH33 117 aa6.9□□□□□ -1.3
SYNE1-206ENST00000367253 TMEM200BQ69YZ2 307 aa6.9□□□□□ -1.3
SYNE1-206ENST00000367253 MRPL53Q96EL3 112 aaKnown RBP6.9□□□□□ -1.3
SYNE1-206ENST00000367253 DOPEY1Q5JWR5 2465 aa6.9□□□□□ -1.3
SYNE1-206ENST00000367253 RHOHQ15669 191 aa6.9□□□□□ -1.31
SYNE1-206ENST00000367253 NMSQ5H8A3 153 aa6.9□□□□□ -1.31
SYNE1-206ENST00000367253 LYZL1Q6UWQ5 148 aa6.9□□□□□ -1.31
SYNE1-206ENST00000367253 IGHV3OR16-8A0A075B7F1 116 aa6.9□□□□□ -1.31
SYNE1-206ENST00000367253 IGHV4-30-2A0A087WSY4 118 aa6.9□□□□□ -1.31
SYNE1-206ENST00000367253 TEX36Q5VZQ5 186 aa6.9□□□□□ -1.31
SYNE1-206ENST00000367253 FAM104BQ5XKR9 115 aa6.9□□□□□ -1.31
SYNE1-206ENST00000367253 SLC25A29Q8N8R3 303 aa6.9□□□□□ -1.31
SYNE1-206ENST00000367253 SORL1Q92673 2214 aa6.9□□□□□ -1.31
SYNE1-206ENST00000367253 FXYD7P58549 80 aa6.89□□□□□ -1.31
SYNE1-206ENST00000367253 LINC00479Q96M42 142 aa6.89□□□□□ -1.31
SYNE1-206ENST00000367253 NPYP01303 97 aa6.89□□□□□ -1.31
SYNE1-206ENST00000367253 IGF2BP2-AS1Q96M15 143 aa6.89□□□□□ -1.31
SYNE1-206ENST00000367253 TRBV6-7A0A0A0MS04 114 aa6.89□□□□□ -1.31
SYNE1-206ENST00000367253 CHKB-CPT1BH3BT56 60 aa6.89□□□□□ -1.31
SYNE1-206ENST00000367253 SRRM4A7MD48 611 aaKnown RBP6.89□□□□□ -1.31
SYNE1-206ENST00000367253 P0DMU3 169 aa6.89□□□□□ -1.31
SYNE1-206ENST00000367253 FAM231AP0DMU4 169 aa6.89□□□□□ -1.31
SYNE1-206ENST00000367253 FAM231CP0DMU5 169 aa6.89□□□□□ -1.31
SYNE1-206ENST00000367253 C12orf74Q32Q52 190 aa6.89□□□□□ -1.31
SYNE1-206ENST00000367253 MDFIQ99750 246 aa6.89□□□□□ -1.31
SYNE1-206ENST00000367253 PRO1854Q9UHT4 67 aa6.88□□□□□ -1.31
SYNE1-206ENST00000367253 IGKV1-8A0A0C4DH67 115 aa6.88□□□□□ -1.31
SYNE1-206ENST00000367253 UBE2AP49459 152 aa6.88□□□□□ -1.31
SYNE1-206ENST00000367253 WIPF2Q8TF74 440 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-206ENST00000367253 SPRY2O43597 315 aa6.88□□□□□ -1.31
SYNE1-206ENST00000367253 MORN2Q502X0 79 aa6.88□□□□□ -1.31
SYNE1-206ENST00000367253 SCN3AQ9NY46 2000 aa6.88□□□□□ -1.31
SYNE1-206ENST00000367253 NUP210Q8TEM1 1887 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-206ENST00000367253 PINLYPA6NC86 204 aa6.88□□□□□ -1.31
SYNE1-206ENST00000367253 USF3Q68DE3 2245 aa6.88□□□□□ -1.31
SYNE1-206ENST00000367253 FAM90A9PA6NNJ1 464 aa6.87□□□□□ -1.31
SYNE1-206ENST00000367253 LY6HO94772 140 aa6.87□□□□□ -1.31
SYNE1-206ENST00000367253 IGHV4-59P01825 116 aa6.87□□□□□ -1.31
SYNE1-206ENST00000367253 RPP25LQ8N5L8 163 aaKnown RBP6.87□□□□□ -1.31
SYNE1-206ENST00000367253 IGHV4-61A0A0C4DH41 118 aa6.87□□□□□ -1.31
SYNE1-206ENST00000367253 SOSTDC1Q6X4U4 206 aa6.87□□□□□ -1.31
SYNE1-206ENST00000367253 GGNQ86UU5 652 aa6.87□□□□□ -1.31
SYNE1-206ENST00000367253 C18orf32Q8TCD1 76 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms