RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 PRSS46E5RG02 174 aa5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 E5RGE8 158 aa5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 MRPS12O15235 138 aaKnown RBP5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 RS1O15537 224 aa5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 AKAIN1P0CW23 69 aa5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 ZNF25P17030 456 aaPredicted RBP5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 CXCL2P19875 107 aa5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 FHITP49789 147 aa5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 ZNF345Q14585 488 aa5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 SCGB2B2Q4G0G5 96 aa5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 SAT2Q96F10 170 aaPredicted RBP5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 RTBDNQ9BSG5 229 aaPredicted RBP5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 SHANK2-AS3Q9BTD1 123 aa5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 HSPB7Q9UBY9 170 aa5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 TP53TG3Q9ULZ0 132 aa5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 SLC45A2Q9UMX9 530 aa5.54□□□□□ -1.52
HMGB1P39-201ENST00000366304 A0A087X0K7 114 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 TEX13DA0A0J9YY54 714 aaPredicted RBP5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 LOC100131303A0A0U1RQF7 123 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 KANTRA0A1W2PQU2 76 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 H3BTX0 84 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 SLC17A3O00476 420 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 GCGP01275 180 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 G0S2P27469 103 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 RPS20P60866 119 aaKnown RBP5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 RPL37AP61513 92 aaKnown RBP5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 VAMP2P63027 116 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 ZNF415Q09FC8 603 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 TMEM268Q5VZI3 342 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 FAAP20Q6NZ36 180 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 ALKAL2Q6UX46 152 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 MARCH1Q8TCQ1 289 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 GPR82Q96P67 336 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 PRRT1Q99946 306 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 DNAJC4Q9NNZ3 241 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 MGAT4CQ9UBM8 478 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 TMEM56-RWDD3S4R434 201 aa5.53□□□□□ -1.52
HMGB1P39-201ENST00000366304 LPAP08519 4548 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 SFTA3P0C7M3 94 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 GYPEP15421 78 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 RAB5AP20339 215 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 FAUP35544 74 aaKnown RBP5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 TCL1AP56279 114 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 RNF151Q2KHN1 245 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 LINC01556Q5JQF7 62 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 AKR1C8PQ5T2L2 129 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 GGNBP1Q5YKI7 109 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 PATE2Q6UY27 113 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 C10orf126Q8N4M7 172 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 KCNRGQ8N5I3 272 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 OR51S1Q8NGJ8 323 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 PCNPQ8WW12 178 aaKnown RBP5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 HIST1H2BAQ96A08 127 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 ZNF479Q96JC4 524 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 VGLL1Q99990 258 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 PYGO2Q9BRQ0 406 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 TMEM147Q9BVK8 224 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 MRPL32Q9BYC8 188 aaKnown RBP5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 ACTR3CQ9C0K3 210 aaPredicted RBP5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 SMDT1Q9H4I9 107 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 NAA60Q9H7X0 242 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 ZNF331Q9NQX6 463 aaPredicted RBP5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 UQCC1Q9NVA1 299 aa5.52□□□□□ -1.53
HMGB1P39-201ENST00000366304 MUC2Q02817 5179 aa5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 IGHV3-38A0A0C4DH36 116 aa5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 PMS2P5A8MQ11 134 aa5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 SRIP30626 198 aa5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 PPT1P50897 306 aa5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 RHEBQ15382 184 aa5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 SURF2Q15527 256 aaPredicted RBP5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 PYY3Q5JQD4 70 aa5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 LELP1Q5T871 98 aa5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 ZFP82Q8N141 532 aa5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 CCDC71LQ8N9Z2 235 aa5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 BLNKQ8WV28 456 aa5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 TREM1Q9NP99 234 aa5.51□□□□□ -1.53
HMGB1P39-201ENST00000366304 SMCO3A2RU48 225 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 RNF222A6NCQ9 220 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 G3V3Q6 166 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 PPP1R2P9O14990 202 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 IGHV3-30P01768 117 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 IGHV3-33P01772 117 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 PPBPP02775 128 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 IGHV3-30-3P0DP02 117 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 IGHV3-30-5P0DP03 117 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 IAPPP10997 89 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 RPL7P18124 248 aaKnown RBP5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 ERCC8Q13216 396 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 JOSD1Q15040 202 aaPredicted RBP5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 TMEM241Q24JQ0 296 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 ANXA2RQ3ZCQ2 193 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 PRR9Q5T870 116 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 ACOT7LQ6ZUV0 252 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 LYZL2Q7Z4W2 148 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 CBLN2Q8IUK8 224 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 BAALCQ8WXS3 180 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 SCGB3A2Q96PL1 93 aa5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 C14orf166Q9Y224 244 aaKnown RBP5.5□□□□□ -1.53
HMGB1P39-201ENST00000366304 TRAV5A0A0B4J249 113 aa5.49□□□□□ -1.53
HMGB1P39-201ENST00000366304 C7orf71A4D174 169 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms