RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 TMEM141Q96I45 108 aa12.27□□□□□ -0.45
PTPRF-201ENST00000359947 NUP210Q8TEM1 1887 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-201ENST00000359947 RSPO1Q2MKA7 263 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-201ENST00000359947 VOPP1Q96AW1 172 aa12.26□□□□□ -0.45
PTPRF-201ENST00000359947 C1orf43Q9BWL3 253 aa12.26□□□□□ -0.45
PTPRF-201ENST00000359947 GYPEP15421 78 aa12.26□□□□□ -0.45
PTPRF-201ENST00000359947 RITA1Q96K30 269 aa12.26□□□□□ -0.45
PTPRF-201ENST00000359947 MPV17L2Q567V2 206 aa12.26□□□□□ -0.45
PTPRF-201ENST00000359947 PTPN13Q12923 2485 aa12.26□□□□□ -0.45
PTPRF-201ENST00000359947 BUB3O43684 328 aa12.26□□□□□ -0.45
PTPRF-201ENST00000359947 IGLC1P0CG04 106 aa12.26□□□□□ -0.45
PTPRF-201ENST00000359947 KIR3DS1Q14943 382 aa12.26□□□□□ -0.45
PTPRF-201ENST00000359947 NOTCH2Q04721 2471 aa12.26□□□□□ -0.45
PTPRF-201ENST00000359947 DENND4CQ5VZ89 1909 aa12.25□□□□□ -0.45
PTPRF-201ENST00000359947 KAAG1Q9UBP8 84 aa12.25□□□□□ -0.45
PTPRF-201ENST00000359947 COLCA2A8K830 154 aa12.25□□□□□ -0.45
PTPRF-201ENST00000359947 A0A1B0GW64 132 aa12.25□□□□□ -0.45
PTPRF-201ENST00000359947 SLAQ13239 276 aa12.25□□□□□ -0.45
PTPRF-201ENST00000359947 DYNAPQ8N1N2 210 aa12.25□□□□□ -0.45
PTPRF-201ENST00000359947 Q8N8P6 123 aa12.25□□□□□ -0.45
PTPRF-201ENST00000359947 MORN5Q5VZ52 161 aa12.25□□□□□ -0.45
PTPRF-201ENST00000359947 DENND4AQ7Z401 1863 aa12.25□□□□□ -0.45
PTPRF-201ENST00000359947 hADV29S1A0JD25 119 aa12.24□□□□□ -0.45
PTPRF-201ENST00000359947 ETV2O00321 342 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-201ENST00000359947 TRAV12-1A0A0B4J245 112 aa12.24□□□□□ -0.45
PTPRF-201ENST00000359947 MAJINQ3KP22 176 aa12.24□□□□□ -0.45
PTPRF-201ENST00000359947 C10orf105Q8TEF2 133 aa12.24□□□□□ -0.45
PTPRF-201ENST00000359947 AJUBAQ96IF1 538 aa12.24□□□□□ -0.45
PTPRF-201ENST00000359947 IGHV4OR15-8A0A075B7B6 117 aa12.24□□□□□ -0.45
PTPRF-201ENST00000359947 A0A087WW49 117 aa12.24□□□□□ -0.45
PTPRF-201ENST00000359947 SPART-AS1P0CW21 52 aa12.24□□□□□ -0.45
PTPRF-201ENST00000359947 DEFB135Q30KP9 77 aa12.24□□□□□ -0.45
PTPRF-201ENST00000359947 CRLF1O75462 422 aa12.23□□□□□ -0.45
PTPRF-201ENST00000359947 C5orf38Q86SI9 138 aa12.23□□□□□ -0.45
PTPRF-201ENST00000359947 ZNF491Q8N8L2 437 aa12.23□□□□□ -0.45
PTPRF-201ENST00000359947 HIST2H2BCQ6DN03 193 aa12.23□□□□□ -0.45
PTPRF-201ENST00000359947 NDUFA12Q9UI09 145 aa12.23□□□□□ -0.45
PTPRF-201ENST00000359947 SMIM2Q9BVW6 85 aa12.22□□□□□ -0.45
PTPRF-201ENST00000359947 ZNF492Q9P255 531 aa12.22□□□□□ -0.45
PTPRF-201ENST00000359947 H3BUA1 57 aa12.22□□□□□ -0.45
PTPRF-201ENST00000359947 CRYGCP07315 174 aa12.22□□□□□ -0.45
PTPRF-201ENST00000359947 TIMM17AQ99595 171 aa12.22□□□□□ -0.45
PTPRF-201ENST00000359947 HAMPP81172 84 aa12.22□□□□□ -0.45
PTPRF-201ENST00000359947 ICOSQ9Y6W8 199 aa12.21□□□□□ -0.45
PTPRF-201ENST00000359947 IGLL5B9A064 214 aa12.21□□□□□ -0.45
PTPRF-201ENST00000359947 WIPF2Q8TF74 440 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-201ENST00000359947 NCOR1P1Q9H4R4 102 aa12.21□□□□□ -0.45
PTPRF-201ENST00000359947 ADAMTSL5Q6ZMM2 481 aa12.21□□□□□ -0.45
PTPRF-201ENST00000359947 CFHR4Q92496 578 aa12.21□□□□□ -0.46
PTPRF-201ENST00000359947 FXYD5Q96DB9 178 aa12.21□□□□□ -0.46
PTPRF-201ENST00000359947 SONP18583 2426 aaKnown RBP12.2□□□□□ -0.46
PTPRF-201ENST00000359947 SOCS3O14543 225 aa12.2□□□□□ -0.46
PTPRF-201ENST00000359947 TMEM14CQ9P0S9 112 aa12.2□□□□□ -0.46
PTPRF-201ENST00000359947 TEX48A0A1B0GUV7 120 aa12.2□□□□□ -0.46
PTPRF-201ENST00000359947 CD5LO43866 347 aa12.2□□□□□ -0.46
PTPRF-201ENST00000359947 C11orf53Q8IXP5 236 aa12.2□□□□□ -0.46
PTPRF-201ENST00000359947 ZNF503Q96F45 646 aa12.2□□□□□ -0.46
PTPRF-201ENST00000359947 DSCR8Q96T75 97 aa12.2□□□□□ -0.46
PTPRF-201ENST00000359947 IGHV7-81A0A0B4J1V7 117 aa12.2□□□□□ -0.46
PTPRF-201ENST00000359947 PYGO2Q9BRQ0 406 aa12.2□□□□□ -0.46
PTPRF-201ENST00000359947 ARHGAP21Q5T5U3 1957 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 C2orf16Q68DN1 1984 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 OR11H6Q8NGC7 330 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 CITED1Q99966 193 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 DLEU1O43261 78 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 HERVK_113P63121 156 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 SPG11Q96JI7 2443 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 TTC28Q96AY4 2481 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 IGLC7A0M8Q6 106 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 LYL1P12980 280 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 TECTAO75443 2155 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 NPYP01303 97 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 TIRAPP58753 221 aa12.19□□□□□ -0.46
PTPRF-201ENST00000359947 IGFL2Q6UWQ7 119 aa12.18□□□□□ -0.46
PTPRF-201ENST00000359947 HIVEP2P31629 2446 aa12.18□□□□□ -0.46
PTPRF-201ENST00000359947 TINCRA0A1B0GVN0 87 aa12.18□□□□□ -0.46
PTPRF-201ENST00000359947 C1orf147Q96MC9 270 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-201ENST00000359947 ATP5G1P05496 136 aa12.18□□□□□ -0.46
PTPRF-201ENST00000359947 ZNF726P1Q15940 193 aa12.18□□□□□ -0.46
PTPRF-201ENST00000359947 WIPF3A6NGB9 483 aa12.18□□□□□ -0.46
PTPRF-201ENST00000359947 C18orf32Q8TCD1 76 aa12.18□□□□□ -0.46
PTPRF-201ENST00000359947 CAMK2N2Q96S95 79 aa12.18□□□□□ -0.46
PTPRF-201ENST00000359947 MRPL23Q16540 153 aaKnown RBP12.18□□□□□ -0.46
PTPRF-201ENST00000359947 C16orf74Q96GX8 76 aa12.18□□□□□ -0.46
PTPRF-201ENST00000359947 AGPAT4-IT1Q9H0P7 198 aa12.18□□□□□ -0.46
PTPRF-201ENST00000359947 SIGLEC8Q9NYZ4 499 aa12.18□□□□□ -0.46
PTPRF-201ENST00000359947 SMAD5-AS1Q9Y6J3 95 aa12.18□□□□□ -0.46
PTPRF-201ENST00000359947 PLA2G5P39877 138 aa12.17□□□□□ -0.46
PTPRF-201ENST00000359947 BOD1L2Q8IYS8 172 aa12.17□□□□□ -0.46
PTPRF-201ENST00000359947 C9orf153Q5TBE3 101 aa12.17□□□□□ -0.46
PTPRF-201ENST00000359947 A0A1W2PNU3 283 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-201ENST00000359947 UBE2V1Q13404 147 aa12.17□□□□□ -0.46
PTPRF-201ENST00000359947 AMTNQ6UX39 209 aa12.16□□□□□ -0.46
PTPRF-201ENST00000359947 ATP6V0E2Q8NHE4 81 aa12.16□□□□□ -0.46
PTPRF-201ENST00000359947 MRPL35Q9NZE8 188 aaKnown RBP12.16□□□□□ -0.46
PTPRF-201ENST00000359947 PROP1O75360 226 aa12.16□□□□□ -0.46
PTPRF-201ENST00000359947 EGR2P11161 476 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-201ENST00000359947 KLK5Q9Y337 293 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-201ENST00000359947 WISP2O76076 250 aa12.16□□□□□ -0.46
PTPRF-201ENST00000359947 C5orf56Q8N8D9 126 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms