RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 TRAV12-1A0A0B4J245 112 aa13.95□□□□□ -0.18
CLSTN3-202ENST00000331148 LGALS1P09382 135 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-202ENST00000331148 Q6ZUT4 128 aa13.94□□□□□ -0.18
CLSTN3-202ENST00000331148 GLMPQ8WWB7 406 aa13.94□□□□□ -0.18
CLSTN3-202ENST00000331148 SMG1Q96Q15 3661 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-202ENST00000331148 IGLV11-55A0A075B6I3 123 aa13.94□□□□□ -0.18
CLSTN3-202ENST00000331148 XGP55808 180 aa13.94□□□□□ -0.18
CLSTN3-202ENST00000331148 FANCD2OSQ96PS1 177 aa13.94□□□□□ -0.18
CLSTN3-202ENST00000331148 TIMM23O14925 209 aa13.93□□□□□ -0.18
CLSTN3-202ENST00000331148 IGKV3D-20A0A0C4DH25 116 aa13.93□□□□□ -0.18
CLSTN3-202ENST00000331148 PRAC2D3DTV9 90 aa13.93□□□□□ -0.18
CLSTN3-202ENST00000331148 LY6LH3BQJ8 138 aa13.92□□□□□ -0.18
CLSTN3-202ENST00000331148 NBR2O15453 112 aa13.92□□□□□ -0.18
CLSTN3-202ENST00000331148 C21orf62Q9NYP8 219 aa13.92□□□□□ -0.18
CLSTN3-202ENST00000331148 RALYQ9UKM9 306 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-202ENST00000331148 UFC1Q9Y3C8 167 aa13.92□□□□□ -0.18
CLSTN3-202ENST00000331148 LINC01549A6NIU2 74 aa13.92□□□□□ -0.18
CLSTN3-202ENST00000331148 IGHV3-23P01764 117 aa13.92□□□□□ -0.18
CLSTN3-202ENST00000331148 TMEM78Q5T7P6 136 aa13.92□□□□□ -0.18
CLSTN3-202ENST00000331148 C11orf21Q9P2W6 132 aa13.92□□□□□ -0.18
CLSTN3-202ENST00000331148 A6NJY4 79 aa13.91□□□□□ -0.18
CLSTN3-202ENST00000331148 TSPAN13O95857 204 aa13.91□□□□□ -0.18
CLSTN3-202ENST00000331148 PSMB2P49721 201 aa13.91□□□□□ -0.18
CLSTN3-202ENST00000331148 UBE2D1P51668 147 aa13.9□□□□□ -0.18
CLSTN3-202ENST00000331148 ERG28Q9UKR5 140 aa13.9□□□□□ -0.18
CLSTN3-202ENST00000331148 LOC107984156A0A0G2JMH3 177 aa13.89□□□□□ -0.19
CLSTN3-202ENST00000331148 SFTA2Q6UW10 78 aa13.89□□□□□ -0.19
CLSTN3-202ENST00000331148 ARL17AQ8IVW1 177 aa13.89□□□□□ -0.19
CLSTN3-202ENST00000331148 PPDPFLQ8WWR9 84 aa13.89□□□□□ -0.19
CLSTN3-202ENST00000331148 PTH2Q96A98 100 aa13.89□□□□□ -0.19
CLSTN3-202ENST00000331148 CARD19Q96LW7 228 aa13.89□□□□□ -0.19
CLSTN3-202ENST00000331148 IGHV7-4-1A0A0J9YVY3 117 aa13.89□□□□□ -0.19
CLSTN3-202ENST00000331148 ZFP2Q6ZN57 461 aa13.89□□□□□ -0.19
CLSTN3-202ENST00000331148 RNF183Q96D59 192 aa13.89□□□□□ -0.19
CLSTN3-202ENST00000331148 PRADC1Q9BSG0 188 aa13.89□□□□□ -0.19
CLSTN3-202ENST00000331148 SMIM2Q9BVW6 85 aa13.89□□□□□ -0.19
CLSTN3-202ENST00000331148 ABCA4P78363 2273 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 IGSF10Q6WRI0 2623 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 CACNA1BQ00975 2339 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 UBE2D3P61077 147 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 UBE2D2P62837 147 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 NEXN-AS1Q8NBZ9 246 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 SCGB3A1Q96QR1 104 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 SPTBN1Q01082 2364 aaKnown RBP13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 IGHV3OR16-8A0A075B7F1 116 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 ZNF815PA8K554 130 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 TEN1Q86WV5 123 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 RNF182Q8N6D2 247 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 OR11H6Q8NGC7 330 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 IGFBPL1Q8WX77 278 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 KLK15Q9H2R5 256 aa13.88□□□□□ -0.19
CLSTN3-202ENST00000331148 RBAKDNA6NC62 111 aa13.87□□□□□ -0.19
CLSTN3-202ENST00000331148 LYNX1G3V0Z9 82 aa13.87□□□□□ -0.19
CLSTN3-202ENST00000331148 C19orf84I3L1E1 186 aa13.87□□□□□ -0.19
CLSTN3-202ENST00000331148 LYNX1P0DP58 116 aa13.87□□□□□ -0.19
CLSTN3-202ENST00000331148 GATA3P23771 443 aa13.87□□□□□ -0.19
CLSTN3-202ENST00000331148 NPBQ8NG41 125 aa13.87□□□□□ -0.19
CLSTN3-202ENST00000331148 TOMM6Q96B49 74 aa13.87□□□□□ -0.19
CLSTN3-202ENST00000331148 PLEKHB2Q96CS7 222 aa13.87□□□□□ -0.19
CLSTN3-202ENST00000331148 LINC01548A6NM66 108 aa13.86□□□□□ -0.19
CLSTN3-202ENST00000331148 CTSGP08311 255 aa13.86□□□□□ -0.19
CLSTN3-202ENST00000331148 C11orf71Q6IPW1 123 aa13.86□□□□□ -0.19
CLSTN3-202ENST00000331148 C5orf64Q2M2E5 130 aa13.85□□□□□ -0.19
CLSTN3-202ENST00000331148 ORMDL2Q53FV1 153 aa13.85□□□□□ -0.19
CLSTN3-202ENST00000331148 LYRM7Q5U5X0 104 aa13.85□□□□□ -0.19
CLSTN3-202ENST00000331148 SCGB1D4Q6XE38 83 aa13.85□□□□□ -0.19
CLSTN3-202ENST00000331148 USP24Q9UPU5 2620 aa13.85□□□□□ -0.19
CLSTN3-202ENST00000331148 IGHV4-4A0A075B6R2 117 aa13.85□□□□□ -0.19
CLSTN3-202ENST00000331148 SLC25A16P16260 332 aa13.85□□□□□ -0.19
CLSTN3-202ENST00000331148 NDPQ00604 133 aa13.85□□□□□ -0.19
CLSTN3-202ENST00000331148 SRSF9Q13242 221 aaKnown RBP eCLIP13.85□□□□□ -0.19
CLSTN3-202ENST00000331148 SPANXN1Q5VSR9 72 aa13.85□□□□□ -0.19
CLSTN3-202ENST00000331148 ONECUT1Q9UBC0 465 aa13.85□□□□□ -0.19
CLSTN3-202ENST00000331148 SCGB2A1O75556 95 aa13.84□□□□□ -0.19
CLSTN3-202ENST00000331148 CD7P09564 240 aa13.84□□□□□ -0.19
CLSTN3-202ENST00000331148 SLC50A1Q9BRV3 221 aa13.84□□□□□ -0.19
CLSTN3-202ENST00000331148 AGPAT4-IT1Q9H0P7 198 aa13.84□□□□□ -0.19
CLSTN3-202ENST00000331148 VCX2Q9H322 139 aa13.84□□□□□ -0.19
CLSTN3-202ENST00000331148 A0A1W2PPR1 153 aa13.84□□□□□ -0.19
CLSTN3-202ENST00000331148 COX6B1P14854 86 aa13.84□□□□□ -0.19
CLSTN3-202ENST00000331148 CFAP46Q8IYW2 2715 aa13.83□□□□□ -0.2
CLSTN3-202ENST00000331148 IGHV3-35A0A0C4DH35 117 aa13.83□□□□□ -0.2
CLSTN3-202ENST00000331148 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.83□□□□□ -0.2
CLSTN3-202ENST00000331148 BAALCQ8WXS3 180 aa13.83□□□□□ -0.2
CLSTN3-202ENST00000331148 LRBAP50851 2863 aa13.83□□□□□ -0.2
CLSTN3-202ENST00000331148 PRSS29PA6NIE9 313 aa13.83□□□□□ -0.2
CLSTN3-202ENST00000331148 TCL1BO95988 128 aa13.83□□□□□ -0.2
CLSTN3-202ENST00000331148 RASL10AQ92737 203 aa13.83□□□□□ -0.2
CLSTN3-202ENST00000331148 PRB1P04280 392 aa13.82□□□□□ -0.2
CLSTN3-202ENST00000331148 HES1Q14469 280 aa13.82□□□□□ -0.2
CLSTN3-202ENST00000331148 SBSPONQ8IVN8 264 aa13.82□□□□□ -0.2
CLSTN3-202ENST00000331148 BBC3Q96PG8 261 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-202ENST00000331148 ANAPC13Q9BS18 74 aa13.82□□□□□ -0.2
CLSTN3-202ENST00000331148 ZNF688P0C7X2 276 aa13.81□□□□□ -0.2
CLSTN3-202ENST00000331148 Q6ZQT7 251 aa13.81□□□□□ -0.2
CLSTN3-202ENST00000331148 NDUFA11Q86Y39 141 aa13.81□□□□□ -0.2
CLSTN3-202ENST00000331148 DPM3Q9P2X0 92 aa13.81□□□□□ -0.2
CLSTN3-202ENST00000331148 A8MWV9 139 aa13.81□□□□□ -0.2
CLSTN3-202ENST00000331148 SUMO2P61956 95 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-202ENST00000331148 H3BVH4 76 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms