RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 CRIP2P52943 208 aaPredicted RBP12.27□□□□□ -0.44
USHBP1-202ENST00000324554 OR9G4Q8NGQ1 327 aa12.27□□□□□ -0.44
USHBP1-202ENST00000324554 ATP6V0BQ99437 205 aa12.27□□□□□ -0.44
USHBP1-202ENST00000324554 KMT2BQ9UMN6 2715 aaPredicted RBP12.27□□□□□ -0.45
USHBP1-202ENST00000324554 ODF1Q14990 250 aa12.27□□□□□ -0.45
USHBP1-202ENST00000324554 C9orf47Q6ZRZ4 202 aa12.27□□□□□ -0.45
USHBP1-202ENST00000324554 JMJD8Q96S16 334 aa12.27□□□□□ -0.45
USHBP1-202ENST00000324554 IGKV2D-26A0A0A0MRZ7 120 aa12.26□□□□□ -0.45
USHBP1-202ENST00000324554 GAGE12BA1L429 117 aa12.26□□□□□ -0.45
USHBP1-202ENST00000324554 HSD52Q0P140 79 aa12.26□□□□□ -0.45
USHBP1-202ENST00000324554 NAA38Q9BRA0 125 aaKnown RBP12.26□□□□□ -0.45
USHBP1-202ENST00000324554 NXT2Q9NPJ8 142 aaKnown RBP12.26□□□□□ -0.45
USHBP1-202ENST00000324554 HIF1ANQ9NWT6 349 aa12.26□□□□□ -0.45
USHBP1-202ENST00000324554 HHLA3Q9XRX5 114 aa12.26□□□□□ -0.45
USHBP1-202ENST00000324554 SIVA1O15304 175 aa12.26□□□□□ -0.45
USHBP1-202ENST00000324554 IGHV4-38-2P0DP08 117 aa12.26□□□□□ -0.45
USHBP1-202ENST00000324554 OCIAD2Q56VL3 154 aa12.26□□□□□ -0.45
USHBP1-202ENST00000324554 CSPG4Q6UVK1 2322 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 APCP25054 2843 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 NAV2Q8IVL1 2488 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 IGLV2-18A0A075B6J9 118 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 IGHV7-4-1A0A0J9YVY3 117 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 NDUFS8O00217 210 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 KIR3DS1Q14943 382 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 GLMPQ8WWB7 406 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 TMEM158Q8WZ71 300 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 TTTY13Q9BZ97 58 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 ZMAT4Q9H898 229 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 SELENOKQ9Y6D0 94 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 A6NDN8 102 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 C9orf118A6NHY6 69 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 H3BRM9 83 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 ARL3P36405 182 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 C16orf92Q96LL3 132 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 MEGF9Q9H1U4 602 aa12.25□□□□□ -0.45
USHBP1-202ENST00000324554 TRAV26-2A0A0B4J265 109 aa12.24□□□□□ -0.45
USHBP1-202ENST00000324554 TRBV12-3P01733 135 aa12.24□□□□□ -0.45
USHBP1-202ENST00000324554 OR4X2Q8NGF9 303 aa12.24□□□□□ -0.45
USHBP1-202ENST00000324554 H3BUT2 72 aa12.23□□□□□ -0.45
USHBP1-202ENST00000324554 AVPP01185 164 aa12.23□□□□□ -0.45
USHBP1-202ENST00000324554 PRSS1P07477 247 aa12.23□□□□□ -0.45
USHBP1-202ENST00000324554 UNQ9165/PRO28630Q6UXU0 137 aa12.23□□□□□ -0.45
USHBP1-202ENST00000324554 GAGE10A6NGK3 116 aa12.23□□□□□ -0.45
USHBP1-202ENST00000324554 IGF1P05019 195 aa12.23□□□□□ -0.45
USHBP1-202ENST00000324554 UFSP1Q6NVU6 142 aa12.23□□□□□ -0.45
USHBP1-202ENST00000324554 Q8N8P6 123 aa12.23□□□□□ -0.45
USHBP1-202ENST00000324554 OR2K2Q8NGT1 345 aa12.23□□□□□ -0.45
USHBP1-202ENST00000324554 C20orf173Q96LM9 149 aa12.23□□□□□ -0.45
USHBP1-202ENST00000324554 MSMBP08118 114 aa12.22□□□□□ -0.45
USHBP1-202ENST00000324554 TM4SF20Q53R12 229 aa12.22□□□□□ -0.45
USHBP1-202ENST00000324554 C9orf139Q6ZV77 190 aa12.22□□□□□ -0.45
USHBP1-202ENST00000324554 NRACQ8N912 160 aa12.22□□□□□ -0.45
USHBP1-202ENST00000324554 RAB37Q96AX2 223 aa12.22□□□□□ -0.45
USHBP1-202ENST00000324554 LY6EQ16553 131 aa12.22□□□□□ -0.45
USHBP1-202ENST00000324554 PRR9Q5T870 116 aa12.22□□□□□ -0.45
USHBP1-202ENST00000324554 FOXC2Q99958 501 aa12.22□□□□□ -0.45
USHBP1-202ENST00000324554 HELZ2Q9BYK8 2649 aaKnown RBP12.21□□□□□ -0.45
USHBP1-202ENST00000324554 GPHB5Q86YW7 130 aa12.21□□□□□ -0.45
USHBP1-202ENST00000324554 UFC1Q9Y3C8 167 aa12.21□□□□□ -0.45
USHBP1-202ENST00000324554 A0A0G2JLM5 398 aa12.21□□□□□ -0.46
USHBP1-202ENST00000324554 NDUFA4O00483 81 aa12.21□□□□□ -0.46
USHBP1-202ENST00000324554 ZNF469Q96JG9 3925 aaPredicted RBP12.2□□□□□ -0.46
USHBP1-202ENST00000324554 RNF223E7ERA6 249 aa12.2□□□□□ -0.46
USHBP1-202ENST00000324554 IGKCP01834 107 aa12.2□□□□□ -0.46
USHBP1-202ENST00000324554 SMIM17P0DL12 118 aa12.2□□□□□ -0.46
USHBP1-202ENST00000324554 AP1S3Q96PC3 154 aa12.2□□□□□ -0.46
USHBP1-202ENST00000324554 IGHG2P01859 326 aa12.2□□□□□ -0.46
USHBP1-202ENST00000324554 GTSCR1Q86UQ5 136 aa12.2□□□□□ -0.46
USHBP1-202ENST00000324554 IGHV4-4A0A075B6R2 117 aa12.19□□□□□ -0.46
USHBP1-202ENST00000324554 H3BUX3 64 aa12.19□□□□□ -0.46
USHBP1-202ENST00000324554 LENEPQ9Y5L5 61 aa12.19□□□□□ -0.46
USHBP1-202ENST00000324554 SOCS3O14543 225 aa12.19□□□□□ -0.46
USHBP1-202ENST00000324554 SMIM15Q7Z3B0 74 aa12.19□□□□□ -0.46
USHBP1-202ENST00000324554 A6NDX4 124 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 H3BVH4 76 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 BRI3O95415 125 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 IGHV3-11P01762 117 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 ZC2HC1BQ5TFG8 222 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 SPANXN1Q5VSR9 72 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 KLK15Q9H2R5 256 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 TEX15Q9BXT5 2789 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 B4DSR2 109 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 H3BUA1 57 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 J3KRW8 73 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 K7EP34 96 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 DPM2O94777 84 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 FXYD2P54710 66 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 GTF2H5Q6ZYL4 71 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 USMG5Q96IX5 58 aa12.18□□□□□ -0.46
USHBP1-202ENST00000324554 PRSS47A8MTI9 375 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 SPRY2O43597 315 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 ATP5LO75964 103 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 PLA2G2AP14555 144 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 LAGE3Q14657 143 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 VPS25Q9BRG1 176 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 TMEM160Q9NX00 188 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 MRPL35Q9NZE8 188 aaKnown RBP12.17□□□□□ -0.46
USHBP1-202ENST00000324554 PRRC2AP48634 2157 aaKnown RBP12.17□□□□□ -0.46
USHBP1-202ENST00000324554 SAP30O75446 220 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 TGFAP01135 160 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms