RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 MDS2Q8NDY4 140 aa7□□□□□ -1.29
USF3-201ENST00000316407 IGKV1-39P01597 117 aa7□□□□□ -1.29
USF3-201ENST00000316407 IGKV1D-39P04432 117 aa7□□□□□ -1.29
USF3-201ENST00000316407 KLHL30-AS1Q8NEE0 82 aa7□□□□□ -1.29
USF3-201ENST00000316407 COX7B2Q8TF08 81 aa7□□□□□ -1.29
USF3-201ENST00000316407 NDUFV3P56181 108 aaKnown RBP7□□□□□ -1.29
USF3-201ENST00000316407 PDE6HQ13956 83 aa7□□□□□ -1.29
USF3-201ENST00000316407 FAM120AOSQ5T036 256 aa7□□□□□ -1.29
USF3-201ENST00000316407 LYPD6BQ8NI32 183 aa7□□□□□ -1.29
USF3-201ENST00000316407 IGKV1-6A0A0C4DH72 117 aa7□□□□□ -1.29
USF3-201ENST00000316407 MT-ATP8P03928 68 aa7□□□□□ -1.29
USF3-201ENST00000316407 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7□□□□□ -1.29
USF3-201ENST00000316407 IGKV2-29A2NJV5 120 aaPredicted RBP7□□□□□ -1.29
USF3-201ENST00000316407 OVOL3O00110 214 aa7□□□□□ -1.29
USF3-201ENST00000316407 FOXI1Q12951 378 aa7□□□□□ -1.29
USF3-201ENST00000316407 Q9H8V8 135 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 IGKV1D-17A0A075B6S4 117 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 SIVA1O15304 175 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 SMIM2Q9BVW6 85 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 RHPN1-AS1Q9BWJ2 59 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 PINLYPA6NC86 204 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 CFC1BP0CG36 223 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 CFC1P0CG37 223 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 ZNF492Q9P255 531 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 ABCA2Q9BZC7 2435 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 SRRM5B3KS81 715 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 WDR86Q86TI4 376 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 MUSTN1Q8IVN3 82 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 PTH2Q96A98 100 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 LY6HO94772 140 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 SPANXDQ9BXN6 97 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 C5orf64Q2M2E5 130 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 TTTY13Q9BZ97 58 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 PRSS22Q9GZN4 317 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 TAX1BP3O14907 124 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 C9orf139Q6ZV77 190 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 PAX9P55771 341 aa6.99□□□□□ -1.29
USF3-201ENST00000316407 GGNQ86UU5 652 aa6.98□□□□□ -1.29
USF3-201ENST00000316407 MRPL55Q7Z7F7 128 aaKnown RBP6.98□□□□□ -1.29
USF3-201ENST00000316407 IGHV4OR15-8A0A075B7B6 117 aa6.98□□□□□ -1.29
USF3-201ENST00000316407 A0A087WW49 117 aa6.98□□□□□ -1.29
USF3-201ENST00000316407 GATA1P15976 413 aaPredicted RBP6.98□□□□□ -1.29
USF3-201ENST00000316407 RPL39LQ96EH5 51 aaKnown RBP6.98□□□□□ -1.29
USF3-201ENST00000316407 Q6ZUT4 128 aa6.98□□□□□ -1.29
USF3-201ENST00000316407 TRBV19A0A075B6N1 114 aa6.98□□□□□ -1.29
USF3-201ENST00000316407 IGFBPL1Q8WX77 278 aa6.98□□□□□ -1.29
USF3-201ENST00000316407 Q6P435 159 aa6.98□□□□□ -1.29
USF3-201ENST00000316407 ZFP2Q6ZN57 461 aa6.98□□□□□ -1.29
USF3-201ENST00000316407 TP73-AS1Q9UF72 201 aa6.98□□□□□ -1.29
USF3-201ENST00000316407 TRAV23DV6A0A075B6W5 121 aa6.98□□□□□ -1.29
USF3-201ENST00000316407 DAZ1Q9NQZ3 744 aaKnown RBP6.98□□□□□ -1.29
USF3-201ENST00000316407 SPANXCQ9NY87 97 aa6.98□□□□□ -1.29
USF3-201ENST00000316407 THBDP07204 575 aa6.98□□□□□ -1.29
USF3-201ENST00000316407 YPEL3P61236 119 aaPredicted RBP6.98□□□□□ -1.29
USF3-201ENST00000316407 C22orf46C9J442 243 aa6.97□□□□□ -1.29
USF3-201ENST00000316407 RNF152Q8N8N0 203 aa6.97□□□□□ -1.29
USF3-201ENST00000316407 ZNRF2Q8NHG8 242 aa6.97□□□□□ -1.29
USF3-201ENST00000316407 PIP4P2Q8N4L2 257 aa6.97□□□□□ -1.29
USF3-201ENST00000316407 EPOPA6NHQ4 379 aa6.97□□□□□ -1.29
USF3-201ENST00000316407 V9GYY9 64 aa6.97□□□□□ -1.29
USF3-201ENST00000316407 LYPD2Q6UXB3 125 aa6.97□□□□□ -1.29
USF3-201ENST00000316407 PRR25Q96S07 402 aa6.97□□□□□ -1.29
USF3-201ENST00000316407 F5H768 121 aa6.96□□□□□ -1.29
USF3-201ENST00000316407 TAL2Q16559 108 aa6.96□□□□□ -1.29
USF3-201ENST00000316407 A4D1N5 150 aa6.96□□□□□ -1.29
USF3-201ENST00000316407 CLPSP04118 112 aa6.96□□□□□ -1.29
USF3-201ENST00000316407 ANKRD39Q53RE8 183 aa6.96□□□□□ -1.3
USF3-201ENST00000316407 C17orf77Q96MU5 243 aa6.96□□□□□ -1.3
USF3-201ENST00000316407 CLUHP3Q96NS8 147 aa6.96□□□□□ -1.3
USF3-201ENST00000316407 NDUFA4L2Q9NRX3 87 aa6.96□□□□□ -1.3
USF3-201ENST00000316407 WFDC11Q8NEX6 87 aa6.96□□□□□ -1.3
USF3-201ENST00000316407 ZNF747Q9BV97 191 aa6.96□□□□□ -1.3
USF3-201ENST00000316407 H3BUX3 64 aa6.96□□□□□ -1.3
USF3-201ENST00000316407 RBAKDNA6NC62 111 aa6.96□□□□□ -1.3
USF3-201ENST00000316407 TPSG1Q9NRR2 321 aa6.96□□□□□ -1.3
USF3-201ENST00000316407 BDP1A6H8Y1 2624 aa6.96□□□□□ -1.3
USF3-201ENST00000316407 SDIM1Q6ZPB5 146 aa6.95□□□□□ -1.3
USF3-201ENST00000316407 FXYD5Q96DB9 178 aa6.95□□□□□ -1.3
USF3-201ENST00000316407 SAA4P35542 130 aa6.95□□□□□ -1.3
USF3-201ENST00000316407 LGALS9O00182 355 aa6.95□□□□□ -1.3
USF3-201ENST00000316407 COL4A5P29400 1685 aa6.95□□□□□ -1.3
USF3-201ENST00000316407 DYNAPQ8N1N2 210 aa6.95□□□□□ -1.3
USF3-201ENST00000316407 TMEM178BH3BS89 294 aa6.95□□□□□ -1.3
USF3-201ENST00000316407 A0A0B4J2C4 111 aa6.95□□□□□ -1.3
USF3-201ENST00000316407 WISP1O95388 367 aa6.95□□□□□ -1.3
USF3-201ENST00000316407 E9PQ18 207 aa6.95□□□□□ -1.3
USF3-201ENST00000316407 GAFA1Q96PS6 74 aa6.95□□□□□ -1.3
USF3-201ENST00000316407 GNRH2O43555 120 aa6.94□□□□□ -1.3
USF3-201ENST00000316407 IGLV10-54A0A075B6I4 117 aa6.94□□□□□ -1.3
USF3-201ENST00000316407 ZNF134P52741 427 aa6.94□□□□□ -1.3
USF3-201ENST00000316407 HERVK_113P63121 156 aa6.94□□□□□ -1.3
USF3-201ENST00000316407 C5orf67F2Z3F1 127 aa6.94□□□□□ -1.3
USF3-201ENST00000316407 ANGP03950 147 aaKnown RBP6.94□□□□□ -1.3
USF3-201ENST00000316407 FAM223BA6NKX1 122 aa6.94□□□□□ -1.3
USF3-201ENST00000316407 FAM223AQ8IWN6 122 aa6.94□□□□□ -1.3
USF3-201ENST00000316407 MRPS18CQ9Y3D5 142 aaKnown RBP6.94□□□□□ -1.3
USF3-201ENST00000316407 DEFB131AP59861 70 aa6.94□□□□□ -1.3
USF3-201ENST00000316407 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.94□□□□□ -1.3
USF3-201ENST00000316407 FOXE3Q13461 319 aa6.94□□□□□ -1.3
USF3-201ENST00000316407 TMEM61Q8N0U2 210 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms