RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 DNAH11Q96DT5 4516 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 SERTM2A0A1B0GWG4 89 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 BCL2L11O43521 198 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 GNRH2O43555 120 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 PFDN1O60925 122 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 IGLV2-11P01706 119 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 TYMSP04818 313 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 SFTA3P0C7M3 94 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 ZNF80P51504 273 aaPredicted RBP11.28□□□□□ -0.6
LSM1-201ENST00000311351 UBE2G2P60604 165 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 TDRG1Q3Y452 100 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 OR11H4Q8NGC9 324 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 NDFIP1Q9BT67 221 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 EPDR1Q9UM22 224 aa11.28□□□□□ -0.6
LSM1-201ENST00000311351 IGHV3-16A0A0C4DH30 117 aa11.27□□□□□ -0.61
LSM1-201ENST00000311351 PAX4O43316 350 aa11.27□□□□□ -0.61
LSM1-201ENST00000311351 SOHLH1Q5JUK2 328 aa11.27□□□□□ -0.61
LSM1-201ENST00000311351 CYB561D1Q8N8Q1 229 aa11.27□□□□□ -0.61
LSM1-201ENST00000311351 ZNF471Q9BX82 626 aaPredicted RBP11.27□□□□□ -0.61
LSM1-201ENST00000311351 C11orf21Q9P2W6 132 aa11.27□□□□□ -0.61
LSM1-201ENST00000311351 PSG8Q9UQ74 426 aa11.27□□□□□ -0.61
LSM1-201ENST00000311351 K7EQM0 130 aa11.26□□□□□ -0.61
LSM1-201ENST00000311351 FLI1Q01543 452 aaPredicted RBP11.26□□□□□ -0.61
LSM1-201ENST00000311351 FHL2Q14192 279 aa11.26□□□□□ -0.61
LSM1-201ENST00000311351 PRNTQ86SH4 94 aa11.26□□□□□ -0.61
LSM1-201ENST00000311351 AKAP14Q86UN6 197 aa11.26□□□□□ -0.61
LSM1-201ENST00000311351 ZNF479Q96JC4 524 aa11.26□□□□□ -0.61
LSM1-201ENST00000311351 SPXQ9BT56 116 aa11.26□□□□□ -0.61
LSM1-201ENST00000311351 KRTAP1-5Q9BYS1 174 aa11.26□□□□□ -0.61
LSM1-201ENST00000311351 Q9H8V8 135 aa11.26□□□□□ -0.61
LSM1-201ENST00000311351 SDF2L1Q9HCN8 221 aa11.26□□□□□ -0.61
LSM1-201ENST00000311351 MRPS16Q9Y3D3 137 aaKnown RBP11.26□□□□□ -0.61
LSM1-201ENST00000311351 A0A1W2PRE2 83 aa11.25□□□□□ -0.61
LSM1-201ENST00000311351 MAP1LC3B2A6NCE7 125 aa11.25□□□□□ -0.61
LSM1-201ENST00000311351 UMAD1C9J7I0 102 aa11.25□□□□□ -0.61
LSM1-201ENST00000311351 GCGP01275 180 aa11.25□□□□□ -0.61
LSM1-201ENST00000311351 SEC11BP0C7V7 166 aa11.25□□□□□ -0.61
LSM1-201ENST00000311351 CRYBA4P53673 196 aa11.25□□□□□ -0.61
LSM1-201ENST00000311351 TMEM75Q8N9X5 138 aa11.25□□□□□ -0.61
LSM1-201ENST00000311351 LINC00479Q96M42 142 aa11.25□□□□□ -0.61
LSM1-201ENST00000311351 UPK3BQ9BT76 320 aa11.25□□□□□ -0.61
LSM1-201ENST00000311351 MAP1LC3BQ9GZQ8 125 aa11.25□□□□□ -0.61
LSM1-201ENST00000311351 PRO0255Q9UI72 69 aa11.25□□□□□ -0.61
LSM1-201ENST00000311351 ICOSQ9Y6W8 199 aa11.25□□□□□ -0.61
LSM1-201ENST00000311351 TRAV34A0A0B4J273 112 aa11.24□□□□□ -0.61
LSM1-201ENST00000311351 TRGV4A0A0C4DH28 118 aa11.24□□□□□ -0.61
LSM1-201ENST00000311351 TPT1P13693 172 aaKnown RBP11.24□□□□□ -0.61
LSM1-201ENST00000311351 TMUB2Q71RG4 321 aa11.24□□□□□ -0.61
LSM1-201ENST00000311351 C6orf223Q8N319 242 aa11.24□□□□□ -0.61
LSM1-201ENST00000311351 STOML3Q8TAV4 291 aa11.24□□□□□ -0.61
LSM1-201ENST00000311351 RASL10AQ92737 203 aa11.24□□□□□ -0.61
LSM1-201ENST00000311351 FAM74A7A6NL05 159 aa11.23□□□□□ -0.61
LSM1-201ENST00000311351 M0R2P5 195 aa11.23□□□□□ -0.61
LSM1-201ENST00000311351 IFNA7P01567 189 aa11.23□□□□□ -0.61
LSM1-201ENST00000311351 C1QBP02746 253 aa11.23□□□□□ -0.61
LSM1-201ENST00000311351 FHITP49789 147 aa11.23□□□□□ -0.61
LSM1-201ENST00000311351 ZFP69Q49AA0 526 aa11.23□□□□□ -0.61
LSM1-201ENST00000311351 EIF5AL1Q6IS14 154 aaKnown RBP11.23□□□□□ -0.61
LSM1-201ENST00000311351 KCNS1Q96KK3 526 aa11.23□□□□□ -0.61
LSM1-201ENST00000311351 NKX6-2Q9C056 277 aaPredicted RBP11.23□□□□□ -0.61
LSM1-201ENST00000311351 HHLA3Q9XRX5 114 aa11.23□□□□□ -0.61
LSM1-201ENST00000311351 hCG_2014768A0A024R1R8 64 aa11.22□□□□□ -0.61
LSM1-201ENST00000311351 PEX7O00628 323 aa11.22□□□□□ -0.61
LSM1-201ENST00000311351 PFN1P07737 140 aaKnown RBP11.22□□□□□ -0.61
LSM1-201ENST00000311351 TNP2Q05952 138 aa11.22□□□□□ -0.61
LSM1-201ENST00000311351 SMUG1Q53HV7 270 aa11.22□□□□□ -0.61
LSM1-201ENST00000311351 LCE2AQ5TA79 106 aaPredicted RBP11.22□□□□□ -0.61
LSM1-201ENST00000311351 DPPA3Q6W0C5 159 aa11.22□□□□□ -0.61
LSM1-201ENST00000311351 Q86TA4 180 aa11.22□□□□□ -0.61
LSM1-201ENST00000311351 TRAV4A0A0B4J268 109 aa11.21□□□□□ -0.61
LSM1-201ENST00000311351 FBLL1A6NHQ2 334 aaKnown RBP11.21□□□□□ -0.61
LSM1-201ENST00000311351 SLAQ13239 276 aa11.21□□□□□ -0.61
LSM1-201ENST00000311351 TTC32Q5I0X7 151 aa11.21□□□□□ -0.61
LSM1-201ENST00000311351 ARL2-SNX15V9GYD0 113 aa11.21□□□□□ -0.61
LSM1-201ENST00000311351 OR4C5Q8NGB2 326 aa11.2□□□□□ -0.62
LSM1-201ENST00000311351 C9JCJ5 164 aa11.19□□□□□ -0.62
LSM1-201ENST00000311351 NXPH4O95158 308 aa11.19□□□□□ -0.62
LSM1-201ENST00000311351 GYPEP15421 78 aa11.19□□□□□ -0.62
LSM1-201ENST00000311351 PPT1P50897 306 aa11.19□□□□□ -0.62
LSM1-201ENST00000311351 MRPL23Q16540 153 aaKnown RBP11.19□□□□□ -0.62
LSM1-201ENST00000311351 SAPCD1Q5SSQ6 148 aa11.19□□□□□ -0.62
LSM1-201ENST00000311351 LOC100131303A0A0U1RQF7 123 aa11.18□□□□□ -0.62
LSM1-201ENST00000311351 A0A1B0GV50 99 aa11.18□□□□□ -0.62
LSM1-201ENST00000311351 K7EQD1 137 aa11.18□□□□□ -0.62
LSM1-201ENST00000311351 RAB5CP51148 216 aa11.18□□□□□ -0.62
LSM1-201ENST00000311351 LGALSLQ3ZCW2 172 aaPredicted RBP11.18□□□□□ -0.62
LSM1-201ENST00000311351 ZNF575Q86XF7 245 aa11.18□□□□□ -0.62
LSM1-201ENST00000311351 FAM213BQ8TBF2 198 aa11.18□□□□□ -0.62
LSM1-201ENST00000311351 PCNPQ8WW12 178 aaKnown RBP11.18□□□□□ -0.62
LSM1-201ENST00000311351 HIST1H2BAQ96A08 127 aa11.18□□□□□ -0.62
LSM1-201ENST00000311351 C9orf85Q96MD7 179 aa11.18□□□□□ -0.62
LSM1-201ENST00000311351 TCEAL7Q9BRU2 100 aa11.18□□□□□ -0.62
LSM1-201ENST00000311351 RNASE3P12724 160 aaKnown RBP11.17□□□□□ -0.62
LSM1-201ENST00000311351 SRIP30626 198 aa11.17□□□□□ -0.62
LSM1-201ENST00000311351 ZNF876PQ49A33 203 aa11.17□□□□□ -0.62
LSM1-201ENST00000311351 LYPD5Q6UWN5 251 aa11.17□□□□□ -0.62
LSM1-201ENST00000311351 NEGR1Q7Z3B1 354 aa11.17□□□□□ -0.62
LSM1-201ENST00000311351 SLC51BQ86UW2 128 aa11.17□□□□□ -0.62
LSM1-201ENST00000311351 IGKV3D-20A0A0C4DH25 116 aa11.16□□□□□ -0.62
LSM1-201ENST00000311351 PGPEP1LA6NFU8 196 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms