RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ARFGEF3Q5TH69 2177 aa15.16■□□□□ 0.02
USP48-201ENST00000308271 MRPL53Q96EL3 112 aaKnown RBP15.16■□□□□ 0.02
USP48-201ENST00000308271 CGB3P0DN86 165 aa15.15■□□□□ 0.02
USP48-201ENST00000308271 CGB7P0DN87 165 aa15.15■□□□□ 0.02
USP48-201ENST00000308271 G3V318 75 aa15.15■□□□□ 0.02
USP48-201ENST00000308271 IGLV2-23P01705 113 aa15.15■□□□□ 0.02
USP48-201ENST00000308271 IGKV1D-37A0A075B6S9 117 aa15.15■□□□□ 0.02
USP48-201ENST00000308271 IGHV3-73A0A0B4J1V6 119 aa15.15■□□□□ 0.02
USP48-201ENST00000308271 TTTY13Q9BZ97 58 aa15.15■□□□□ 0.02
USP48-201ENST00000308271 IFITM1P13164 125 aa15.14■□□□□ 0.01
USP48-201ENST00000308271 PCNX2A6NKB5 2137 aa15.14■□□□□ 0.01
USP48-201ENST00000308271 TRGV2A0A075B6R0 118 aa15.14■□□□□ 0.01
USP48-201ENST00000308271 OVOL3O00110 214 aa15.14■□□□□ 0.01
USP48-201ENST00000308271 SPG11Q96JI7 2443 aa15.14■□□□□ 0.01
USP48-201ENST00000308271 CRPP02741 224 aa15.14■□□□□ 0.01
USP48-201ENST00000308271 ZNF415Q09FC8 603 aa15.14■□□□□ 0.01
USP48-201ENST00000308271 LINC00322Q6ZN03 302 aaPredicted RBP15.14■□□□□ 0.01
USP48-201ENST00000308271 NCOR2Q9Y618 2525 aa15.13■□□□□ 0.01
USP48-201ENST00000308271 MUC22E2RYF6 1773 aaPredicted RBP15.13■□□□□ 0.01
USP48-201ENST00000308271 RITA1Q96K30 269 aa15.13■□□□□ 0.01
USP48-201ENST00000308271 H3BUX3 64 aa15.13■□□□□ 0.01
USP48-201ENST00000308271 LGALS1P09382 135 aaKnown RBP15.13■□□□□ 0.01
USP48-201ENST00000308271 ADARB2-AS1A8MUL3 147 aa15.13■□□□□ 0.01
USP48-201ENST00000308271 I3L3M4 83 aa15.12■□□□□ 0.01
USP48-201ENST00000308271 ODF1Q14990 250 aa15.12■□□□□ 0.01
USP48-201ENST00000308271 IGHV1-69DA0A0B4J2H0 117 aa15.12■□□□□ 0.01
USP48-201ENST00000308271 RNF114Q9Y508 228 aa15.12■□□□□ 0.01
USP48-201ENST00000308271 OVOL2Q9BRP0 275 aa15.12■□□□□ 0.01
USP48-201ENST00000308271 DKK4Q9UBT3 224 aa15.11■□□□□ 0.01
USP48-201ENST00000308271 NDUFA4O00483 81 aa15.11■□□□□ 0.01
USP48-201ENST00000308271 SPANXDQ9BXN6 97 aa15.11■□□□□ 0.01
USP48-201ENST00000308271 MYO18BQ8IUG5 2567 aa15.11■□□□□ 0.01
USP48-201ENST00000308271 NUP210LQ5VU65 1888 aa15.11■□□□□ 0.01
USP48-201ENST00000308271 CFC1BP0CG36 223 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 CFC1P0CG37 223 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 LINC00158P58513 81 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 RPL36AP83881 106 aaKnown RBP15.1■□□□□ 0.01
USP48-201ENST00000308271 BRD3OSQ6XYD6 125 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 RPL36ALQ969Q0 106 aaKnown RBP15.1■□□□□ 0.01
USP48-201ENST00000308271 GAGE12JA6NER3 117 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 GAGE7O76087 117 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 GAGE12FP0CL80 117 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 GAGE12GP0CL81 117 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 GAGE12IP0CL82 117 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 GAGE4Q13068 117 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 PRIMA1Q86XR5 153 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 STHQ8IWL8 128 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 PRSS33Q8NF86 280 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 NTN5Q8WTR8 489 aaPredicted RBP15.1■□□□□ 0.01
USP48-201ENST00000308271 NCKAP5O14513 1909 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 IGLV11-55A0A075B6I3 123 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 FOXE3Q13461 319 aa15.1■□□□□ 0.01
USP48-201ENST00000308271 TEX22C9J3V5 150 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 TRAV12-1A0A0B4J245 112 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 GAGE5Q13069 117 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 GAGE6Q13070 117 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 DAZAP2Q15038 168 aaPredicted RBP15.09■□□□□ 0.01
USP48-201ENST00000308271 TEN1Q86WV5 123 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 TMEM86BQ8N661 226 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 NDUFA12Q9UI09 145 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 WI2-2373I1.2A0A1W2PRP0 233 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 LEPROTO15243 131 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 IGFL2Q6UWQ7 119 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 ZGRF1Q86YA3 2104 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 LINC00310P59036 64 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 LINC00574Q9H8X3 128 aa15.09■□□□□ 0.01
USP48-201ENST00000308271 INAFM2P0DMQ5 153 aa15.08■□□□□ 0
USP48-201ENST00000308271 LOXL1Q08397 574 aaPredicted RBP15.08■□□□□ 0
USP48-201ENST00000308271 TP73-AS1Q9UF72 201 aa15.08■□□□□ 0
USP48-201ENST00000308271 SPRY4Q9C004 299 aa15.07■□□□□ 0
USP48-201ENST00000308271 MSMPQ1L6U9 139 aa15.07■□□□□ 0
USP48-201ENST00000308271 C9orf153Q5TBE3 101 aa15.07■□□□□ 0
USP48-201ENST00000308271 CFAP161Q6P656 301 aa15.07■□□□□ 0
USP48-201ENST00000308271 NPBQ8NG41 125 aa15.07■□□□□ 0
USP48-201ENST00000308271 COX6B1P14854 86 aa15.07■□□□□ 0
USP48-201ENST00000308271 SRSF2Q01130 221 aaKnown RBP15.07■□□□□ 0
USP48-201ENST00000308271 Q8N7P7 452 aa15.06■□□□□ 0
USP48-201ENST00000308271 IGFBPL1Q8WX77 278 aa15.06■□□□□ 0
USP48-201ENST00000308271 FOXI1Q12951 378 aa15.06■□□□□ 0
USP48-201ENST00000308271 PLA2G2CQ5R387 149 aa15.06■□□□□ 0
USP48-201ENST00000308271 C1orf159Q96HA4 380 aa15.06■□□□□ 0
USP48-201ENST00000308271 IGHV1OR15-1A0A075B7D0 117 aa15.06■□□□□ 0
USP48-201ENST00000308271 RHODO00212 210 aa15.06■□□□□ 0
USP48-201ENST00000308271 CTSGP08311 255 aa15.06■□□□□ 0
USP48-201ENST00000308271 GHRHP01286 108 aa15.05■□□□□ 0
USP48-201ENST00000308271 BPESC1Q9GZL8 116 aa15.05■□□□□ 0
USP48-201ENST00000308271 PRR14LQ5THK1 2151 aa15.05■□□□□ 0
USP48-201ENST00000308271 IGLV1-47P01700 117 aa15.05■□□□□ -0
USP48-201ENST00000308271 C15orf53Q8NAA6 179 aa15.05■□□□□ -0
USP48-201ENST00000308271 S100A7L2Q5SY68 101 aa15.04■□□□□ -0
USP48-201ENST00000308271 GAGE2AQ6NT46 116 aa15.04■□□□□ -0
USP48-201ENST00000308271 GATD1Q8NB37 220 aa15.04■□□□□ -0
USP48-201ENST00000308271 RHOHQ15669 191 aa15.04■□□□□ -0
USP48-201ENST00000308271 C1orf229Q6ZS94 237 aaPredicted RBP15.04■□□□□ -0
USP48-201ENST00000308271 EDA2RQ9HAV5 297 aa15.04■□□□□ -0
USP48-201ENST00000308271 PTPN13Q12923 2485 aa15.04■□□□□ -0
USP48-201ENST00000308271 PAX4O43316 350 aa15.04■□□□□ -0
USP48-201ENST00000308271 E9PLD3 99 aa15.03■□□□□ -0
USP48-201ENST00000308271 BUB3O43684 328 aa15.03■□□□□ -0
USP48-201ENST00000308271 CARD19Q96LW7 228 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms