RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 MBD6Q96DN6 1003 aa12.74□□□□□ -0.37
CTCF-201ENST00000264010 IGHV1-69DA0A0B4J2H0 117 aa12.74□□□□□ -0.37
CTCF-201ENST00000264010 IGHV1-69P01742 117 aa12.74□□□□□ -0.37
CTCF-201ENST00000264010 D6R8Y8 96 aa12.74□□□□□ -0.37
CTCF-201ENST00000264010 MEIG1Q5JSS6 88 aa12.74□□□□□ -0.37
CTCF-201ENST00000264010 SH2D1AO60880 128 aa12.73□□□□□ -0.37
CTCF-201ENST00000264010 RAX2Q96IS3 184 aa12.73□□□□□ -0.37
CTCF-201ENST00000264010 SPG11Q96JI7 2443 aa12.73□□□□□ -0.37
CTCF-201ENST00000264010 TMEM262E9PQX1 116 aa12.73□□□□□ -0.37
CTCF-201ENST00000264010 COX6B1P14854 86 aa12.73□□□□□ -0.37
CTCF-201ENST00000264010 PAX8Q06710 450 aa12.73□□□□□ -0.37
CTCF-201ENST00000264010 IGFL4Q6B9Z1 124 aa12.73□□□□□ -0.37
CTCF-201ENST00000264010 MLST8Q9BVC4 326 aa12.73□□□□□ -0.37
CTCF-201ENST00000264010 CENPVL3A0A0U1RRI6 287 aa12.72□□□□□ -0.37
CTCF-201ENST00000264010 TMEM8BA6NDV4 472 aa12.72□□□□□ -0.37
CTCF-201ENST00000264010 SMIM17P0DL12 118 aa12.72□□□□□ -0.37
CTCF-201ENST00000264010 EBI3Q14213 229 aa12.72□□□□□ -0.37
CTCF-201ENST00000264010 GLMPQ8WWB7 406 aa12.72□□□□□ -0.37
CTCF-201ENST00000264010 ARMS2P0C7Q2 107 aa12.72□□□□□ -0.37
CTCF-201ENST00000264010 LMO4P61968 165 aa12.72□□□□□ -0.37
CTCF-201ENST00000264010 NACAE9PAV3 2078 aa12.72□□□□□ -0.37
CTCF-201ENST00000264010 HAX1O00165 279 aa12.72□□□□□ -0.37
CTCF-201ENST00000264010 CTSGP08311 255 aa12.72□□□□□ -0.37
CTCF-201ENST00000264010 OR10J6PQ8NGY7 276 aa12.72□□□□□ -0.37
CTCF-201ENST00000264010 Q8TAT8 98 aa12.72□□□□□ -0.37
CTCF-201ENST00000264010 DLX4Q92988 240 aaPredicted RBP12.72□□□□□ -0.37
CTCF-201ENST00000264010 C9JAW5 83 aa12.71□□□□□ -0.37
CTCF-201ENST00000264010 LYZL1Q6UWQ5 148 aa12.71□□□□□ -0.37
CTCF-201ENST00000264010 C19orf71A6NCJ1 209 aa12.71□□□□□ -0.37
CTCF-201ENST00000264010 CRXO43186 299 aaPredicted RBP12.71□□□□□ -0.37
CTCF-201ENST00000264010 COX6CP09669 75 aa12.71□□□□□ -0.37
CTCF-201ENST00000264010 SPATA12Q7Z6I5 190 aa12.71□□□□□ -0.37
CTCF-201ENST00000264010 C8orf49Q96NF6 230 aa12.71□□□□□ -0.37
CTCF-201ENST00000264010 SORL1Q92673 2214 aa12.71□□□□□ -0.38
CTCF-201ENST00000264010 TRBV6-1A0A0K0K1D8 114 aa12.71□□□□□ -0.38
CTCF-201ENST00000264010 KLF5Q13887 457 aaPredicted RBP12.71□□□□□ -0.38
CTCF-201ENST00000264010 SVIPQ8NHG7 77 aa12.71□□□□□ -0.38
CTCF-201ENST00000264010 EDA2RQ9HAV5 297 aa12.71□□□□□ -0.38
CTCF-201ENST00000264010 FAM223BA6NKX1 122 aa12.7□□□□□ -0.38
CTCF-201ENST00000264010 FAM223AQ8IWN6 122 aa12.7□□□□□ -0.38
CTCF-201ENST00000264010 PRSS22Q9GZN4 317 aa12.7□□□□□ -0.38
CTCF-201ENST00000264010 CHD8Q9HCK8 2581 aa12.7□□□□□ -0.38
CTCF-201ENST00000264010 HIVEP3Q5T1R4 2406 aa12.7□□□□□ -0.38
CTCF-201ENST00000264010 H3BUX3 64 aa12.7□□□□□ -0.38
CTCF-201ENST00000264010 PTH2Q96A98 100 aa12.7□□□□□ -0.38
CTCF-201ENST00000264010 ZNF815PA8K554 130 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 IGKCP01834 107 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 YAE1D1Q9NRH1 226 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 TRAV8-4A0A0B4J246 113 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 C19orf84I3L1E1 186 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 IGHV3-11P01762 117 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 DSCR9P59020 149 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 C9orf153Q5TBE3 101 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 LINC00322Q6ZN03 302 aaPredicted RBP12.69□□□□□ -0.38
CTCF-201ENST00000264010 GTSF1Q8WW33 167 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 PRR25Q96S07 402 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 LINC01549A6NIU2 74 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 DPM2O94777 84 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 C1QTNF4Q9BXJ3 329 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 TP53TG3Q9ULZ0 132 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 AKAP13Q12802 2813 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 ADGRG4Q8IZF6 3080 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 B4DSR2 109 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 Q8N6K4 173 aa12.69□□□□□ -0.38
CTCF-201ENST00000264010 IGHV3-64A0A075B6Q5 118 aa12.68□□□□□ -0.38
CTCF-201ENST00000264010 C8orf86Q6ZUL3 223 aa12.68□□□□□ -0.38
CTCF-201ENST00000264010 AMN1Q8IY45 258 aa12.68□□□□□ -0.38
CTCF-201ENST00000264010 F8W1H4 67 aa12.68□□□□□ -0.38
CTCF-201ENST00000264010 FAM106AQ4KMX7 169 aa12.68□□□□□ -0.38
CTCF-201ENST00000264010 SIVA1O15304 175 aa12.68□□□□□ -0.38
CTCF-201ENST00000264010 RS1O15537 224 aa12.68□□□□□ -0.38
CTCF-201ENST00000264010 MSMBP08118 114 aa12.67□□□□□ -0.38
CTCF-201ENST00000264010 ZNF56Q15929 161 aa12.67□□□□□ -0.38
CTCF-201ENST00000264010 IGHV4-61A0A0C4DH41 118 aa12.67□□□□□ -0.38
CTCF-201ENST00000264010 FXYD2P54710 66 aa12.67□□□□□ -0.38
CTCF-201ENST00000264010 HTN1P15515 57 aa12.67□□□□□ -0.38
CTCF-201ENST00000264010 A0A1B0GXF2 115 aa12.66□□□□□ -0.38
CTCF-201ENST00000264010 ID1P41134 155 aa12.66□□□□□ -0.38
CTCF-201ENST00000264010 A0A1W2PPR1 153 aa12.66□□□□□ -0.38
CTCF-201ENST00000264010 USMG5Q96IX5 58 aa12.66□□□□□ -0.38
CTCF-201ENST00000264010 GDF5OSQ5U4N7 250 aa12.66□□□□□ -0.38
CTCF-201ENST00000264010 SCGB3A1Q96QR1 104 aa12.66□□□□□ -0.38
CTCF-201ENST00000264010 DKK2Q9UBU2 259 aa12.66□□□□□ -0.38
CTCF-201ENST00000264010 MT-ATP8P03928 68 aa12.65□□□□□ -0.38
CTCF-201ENST00000264010 ERCC8Q13216 396 aa12.65□□□□□ -0.38
CTCF-201ENST00000264010 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.65□□□□□ -0.38
CTCF-201ENST00000264010 TRAV2A0A0B4J234 112 aa12.65□□□□□ -0.38
CTCF-201ENST00000264010 RNASE1P07998 156 aaKnown RBP12.65□□□□□ -0.38
CTCF-201ENST00000264010 IFITM1P13164 125 aa12.65□□□□□ -0.38
CTCF-201ENST00000264010 LGALS3P17931 250 aaKnown RBP12.65□□□□□ -0.38
CTCF-201ENST00000264010 C5orf56Q8N8D9 126 aa12.65□□□□□ -0.39
CTCF-201ENST00000264010 TRBV7-9A0A0J9YWB2 115 aa12.64□□□□□ -0.39
CTCF-201ENST00000264010 NPC2P61916 151 aa12.64□□□□□ -0.39
CTCF-201ENST00000264010 RNF182Q8N6D2 247 aa12.64□□□□□ -0.39
CTCF-201ENST00000264010 C10orf105Q8TEF2 133 aa12.64□□□□□ -0.39
CTCF-201ENST00000264010 ACACBO00763 2458 aa12.64□□□□□ -0.39
CTCF-201ENST00000264010 CACNA1AO00555 2505 aa12.64□□□□□ -0.39
CTCF-201ENST00000264010 A0A0U1RRA0 63 aa12.64□□□□□ -0.39
CTCF-201ENST00000264010 HLA-DMBP28068 263 aa12.64□□□□□ -0.39
CTCF-201ENST00000264010 LINC00310P59036 64 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms