RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CD300EQ496F6 205 aaPredicted RBP8.83□□□□□ -1
VPS4A-201ENST00000254950 C9orf66Q5T8R8 295 aa8.83□□□□□ -1
VPS4A-201ENST00000254950 KLK9Q9UKQ9 250 aa8.83□□□□□ -1
VPS4A-201ENST00000254950 HELZ2Q9BYK8 2649 aaKnown RBP8.83□□□□□ -1
VPS4A-201ENST00000254950 NCR2O95944 276 aa8.83□□□□□ -1
VPS4A-201ENST00000254950 LINC00614P0C842 121 aa8.83□□□□□ -1
VPS4A-201ENST00000254950 FAM19A2Q8N3H0 131 aa8.83□□□□□ -1
VPS4A-201ENST00000254950 C14orf178Q8N769 122 aaPredicted RBP8.83□□□□□ -1
VPS4A-201ENST00000254950 ST20Q9HBF5 79 aa8.83□□□□□ -1
VPS4A-201ENST00000254950 NDUFA11Q86Y39 141 aa8.82□□□□□ -1
VPS4A-201ENST00000254950 LOC102724200A0A096LPH7 203 aaPredicted RBP8.82□□□□□ -1
VPS4A-201ENST00000254950 LINC00587B1AMM8 73 aa8.82□□□□□ -1
VPS4A-201ENST00000254950 EVI2AP22794 236 aa8.82□□□□□ -1
VPS4A-201ENST00000254950 ZNF876PQ49A33 203 aa8.82□□□□□ -1
VPS4A-201ENST00000254950 LINC00518Q8N0U6 118 aa8.82□□□□□ -1
VPS4A-201ENST00000254950 PYGO2Q9BRQ0 406 aa8.82□□□□□ -1
VPS4A-201ENST00000254950 TRGV1A0A0A0MS02 117 aa8.81□□□□□ -1
VPS4A-201ENST00000254950 C5orf52A6NGY3 159 aa8.81□□□□□ -1
VPS4A-201ENST00000254950 F8W735 103 aaPredicted RBP8.81□□□□□ -1
VPS4A-201ENST00000254950 ZNF324O75467 553 aaPredicted RBP8.81□□□□□ -1
VPS4A-201ENST00000254950 ZNF256Q9Y2P7 627 aaPredicted RBP8.81□□□□□ -1
VPS4A-201ENST00000254950 CFAP46Q8IYW2 2715 aa8.81□□□□□ -1
VPS4A-201ENST00000254950 PMCHL1Q16048 86 aa8.81□□□□□ -1
VPS4A-201ENST00000254950 NIT1Q86X76 327 aa8.81□□□□□ -1
VPS4A-201ENST00000254950 TMEM160Q9NX00 188 aa8.81□□□□□ -1
VPS4A-201ENST00000254950 APRG1Q8IVJ8 170 aa8.81□□□□□ -1
VPS4A-201ENST00000254950 CHCHD1Q96BP2 118 aaKnown RBP8.81□□□□□ -1
VPS4A-201ENST00000254950 UBE2CO00762 179 aa8.8□□□□□ -1
VPS4A-201ENST00000254950 DEFB1P60022 68 aa8.8□□□□□ -1
VPS4A-201ENST00000254950 FAM104BQ5XKR9 115 aa8.8□□□□□ -1
VPS4A-201ENST00000254950 AMMECR1LQ6DCA0 310 aa8.8□□□□□ -1
VPS4A-201ENST00000254950 TMEM70Q9BUB7 260 aa8.8□□□□□ -1
VPS4A-201ENST00000254950 SMAD5-AS1Q9Y6J3 95 aa8.8□□□□□ -1
VPS4A-201ENST00000254950 ATP5LO75964 103 aa8.8□□□□□ -1
VPS4A-201ENST00000254950 PAM16Q9Y3D7 125 aa8.8□□□□□ -1
VPS4A-201ENST00000254950 K7EQG2 157 aa8.8□□□□□ -1
VPS4A-201ENST00000254950 HIST3H2BBQ8N257 126 aa8.8□□□□□ -1
VPS4A-201ENST00000254950 OR4C5Q8NGB2 326 aa8.8□□□□□ -1
VPS4A-201ENST00000254950 TRGV4A0A0C4DH28 118 aa8.79□□□□□ -1
VPS4A-201ENST00000254950 KLF5Q13887 457 aaPredicted RBP8.79□□□□□ -1
VPS4A-201ENST00000254950 PAPPA-AS1Q5QFB9 102 aa8.79□□□□□ -1
VPS4A-201ENST00000254950 GFI1BQ5VTD9 330 aa8.79□□□□□ -1
VPS4A-201ENST00000254950 C18orf15Q96N68 181 aa8.79□□□□□ -1
VPS4A-201ENST00000254950 HERVK_113P61574 105 aa8.79□□□□□ -1
VPS4A-201ENST00000254950 TMEM256Q8N2U0 113 aa8.79□□□□□ -1
VPS4A-201ENST00000254950 A0A0J9YX75 114 aa8.79□□□□□ -1
VPS4A-201ENST00000254950 NDUFA7O95182 113 aa8.79□□□□□ -1
VPS4A-201ENST00000254950 IGLV2-8P01709 118 aa8.79□□□□□ -1
VPS4A-201ENST00000254950 HNRNPA3P51991 378 aaKnown RBP8.79□□□□□ -1
VPS4A-201ENST00000254950 UBE2L6O14933 153 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 HBDP02042 147 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 WIPF2Q8TF74 440 aaPredicted RBP8.78□□□□□ -1
VPS4A-201ENST00000254950 HIST1H2BLQ99880 126 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 LAMTOR2Q9Y2Q5 125 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 U3KQE9 123 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 A0A087WWL8 130 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 DEFB114Q30KQ6 69 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 LINC01559Q495D7 138 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 MLST8Q9BVC4 326 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 A0A096LNT2 108 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 TRBV7-9A0A0J9YWB2 115 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 SMKR1H3BMG3 65 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 SRSF2Q01130 221 aaKnown RBP8.78□□□□□ -1
VPS4A-201ENST00000254950 SLAQ13239 276 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 ORMDL2Q53FV1 153 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 C19orf71A6NCJ1 209 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 CRLF1O75462 422 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 HTN3P15516 51 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 INSL3P51460 131 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 Q0VG73 95 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 SCGB3A1Q96QR1 104 aa8.78□□□□□ -1
VPS4A-201ENST00000254950 F8P00451 2351 aa8.77□□□□□ -1.01
VPS4A-201ENST00000254950 FSHBP01225 129 aa8.77□□□□□ -1.01
VPS4A-201ENST00000254950 CDPF1Q6NVV7 123 aa8.77□□□□□ -1.01
VPS4A-201ENST00000254950 RHODO00212 210 aa8.77□□□□□ -1.01
VPS4A-201ENST00000254950 GNRH2O43555 120 aa8.77□□□□□ -1.01
VPS4A-201ENST00000254950 APOC4P55056 127 aa8.77□□□□□ -1.01
VPS4A-201ENST00000254950 C18orf65Q6ZTR6 163 aa8.77□□□□□ -1.01
VPS4A-201ENST00000254950 IGHV3-73A0A0B4J1V6 119 aa8.77□□□□□ -1.01
VPS4A-201ENST00000254950 OR2K2Q8NGT1 345 aa8.77□□□□□ -1.01
VPS4A-201ENST00000254950 MRAP2Q96G30 205 aa8.77□□□□□ -1.01
VPS4A-201ENST00000254950 C18orf32Q8TCD1 76 aa8.76□□□□□ -1.01
VPS4A-201ENST00000254950 TCAPO15273 167 aa8.76□□□□□ -1.01
VPS4A-201ENST00000254950 RNF152Q8N8N0 203 aa8.76□□□□□ -1.01
VPS4A-201ENST00000254950 RELNP78509 3460 aa8.76□□□□□ -1.01
VPS4A-201ENST00000254950 MRPL51Q4U2R6 128 aaKnown RBP8.76□□□□□ -1.01
VPS4A-201ENST00000254950 TMEM158Q8WZ71 300 aa8.76□□□□□ -1.01
VPS4A-201ENST00000254950 SPXQ9BT56 116 aa8.76□□□□□ -1.01
VPS4A-201ENST00000254950 A8MWV9 139 aa8.75□□□□□ -1.01
VPS4A-201ENST00000254950 ALKBH7Q9BT30 221 aaPredicted RBP8.75□□□□□ -1.01
VPS4A-201ENST00000254950 CYSLTR1Q9Y271 337 aa8.75□□□□□ -1.01
VPS4A-201ENST00000254950 C2CD3Q4AC94 2353 aa8.75□□□□□ -1.01
VPS4A-201ENST00000254950 TRAV8-2A0A0B4J237 113 aa8.75□□□□□ -1.01
VPS4A-201ENST00000254950 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.75□□□□□ -1.01
VPS4A-201ENST00000254950 TNFRSF6BO95407 300 aa8.75□□□□□ -1.01
VPS4A-201ENST00000254950 TMEM97Q5BJF2 176 aa8.75□□□□□ -1.01
VPS4A-201ENST00000254950 HIST2H2BDQ6DRA6 164 aa8.75□□□□□ -1.01
VPS4A-201ENST00000254950 GTSF1Q8WW33 167 aa8.75□□□□□ -1.01
VPS4A-201ENST00000254950 MAP6D1Q9H9H5 199 aa8.75□□□□□ -1.01
VPS4A-201ENST00000254950 CUBNO60494 3623 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms