RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 NDUFB1O75438 58 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 C14orf178Q8N769 122 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-220ENST00000641603 NRGNQ92686 78 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 PPIFP30405 207 aaKnown RBP3.7□□□□□ -1.82
SCN1A-220ENST00000641603 C6orf226Q5I0X4 101 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 TMEM200BQ69YZ2 307 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 FAM90A27PA6NNH2 459 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 SMKR1H3BMG3 65 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 COX7A2LO14548 114 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 IGHG3P01860 377 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 WNK2Q9Y3S1 2297 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 CHD3Q12873 2000 aaKnown RBP3.7□□□□□ -1.82
SCN1A-220ENST00000641603 CCL4P13236 92 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 MP68P56378 58 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 TCL1BO95988 128 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 INSP01308 110 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 APELAP0DMC3 54 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 TP53BP1Q12888 1972 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-220ENST00000641603 C15orf65H3BRN8 121 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 H3BUA1 57 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 DEFB109BQ30KR1 87 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 Q6JHZ5 121 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 C2orf91Q6ZV80 131 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 TMEM256-PLSCR3K7ERE1 68 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 EFNA2O43921 213 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 BUB3O43684 328 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 C20orf204Q6ZNR8 217 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 FAM167A-AS1Q96KT0 104 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 DAZ1Q9NQZ3 744 aaKnown RBP3.7□□□□□ -1.82
SCN1A-220ENST00000641603 IGHV1-2P23083 117 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 C1orf195Q5TG92 126 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 BRK1Q8WUW1 75 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 PKIGQ9Y2B9 76 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 LTBP1Q14766 1721 aa3.7□□□□□ -1.82
SCN1A-220ENST00000641603 ZDBF2Q9HCK1 2354 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 IGKV3-15P01624 115 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 PRORYQ9H606 182 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 LCTP09848 1927 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 ZNF134P52741 427 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 SAP25Q8TEE9 199 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 MDFICQ9P1T7 246 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 IGKV1D-17A0A075B6S4 117 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 HOXD3P31249 432 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-220ENST00000641603 FUSP35637 526 aaKnown RBP eCLIP3.69□□□□□ -1.82
SCN1A-220ENST00000641603 PLA2G2FQ9BZM2 168 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 FNDC1Q4ZHG4 1894 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-220ENST00000641603 TRAV12-2A0A075B6T6 113 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 CELA2AP08217 269 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 EGR2P11161 476 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-220ENST00000641603 CLEC19AQ6UXS0 136 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 ZNF837Q96EG3 531 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-220ENST00000641603 DCTN5Q9BTE1 182 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 TRAV41A0A0B4J266 112 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 UBE2BP63146 152 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 HAMPP81172 84 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 MIAQ16674 131 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 C15orf32Q32M92 178 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 MUC7Q8TAX7 377 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 TNS1Q9HBL0 1735 aaKnown RBP3.69□□□□□ -1.82
SCN1A-220ENST00000641603 WFDC12Q8WWY7 111 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 TP53TG3Q9ULZ0 132 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 IGHV1-58A0A0C4DH39 117 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 BUB1B-PAK6H3BSN5 160 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 COL8A2P25067 703 aa3.69□□□□□ -1.82
SCN1A-220ENST00000641603 IGHV3-48P01763 117 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 ZFP2Q6ZN57 461 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 COL9A2Q14055 689 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-220ENST00000641603 HTN1P15515 57 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 XGP55808 180 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 B3GALT5-AS1P59052 145 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 WT1-ASQ06250 92 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 EP300Q09472 2414 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-220ENST00000641603 NBL1P41271 181 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 ZNRF2Q8NHG8 242 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 Q8TAT8 98 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 MCRIP2Q9BUT9 160 aaKnown RBP3.68□□□□□ -1.82
SCN1A-220ENST00000641603 ZNF576Q9H609 170 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 CSDC2Q9Y534 153 aaKnown RBP3.68□□□□□ -1.82
SCN1A-220ENST00000641603 COL4A1P02462 1669 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 ZNF503Q96F45 646 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 MUSTN1Q8IVN3 82 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 SLC25A45Q8N413 288 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 FANCD2OSQ96PS1 177 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 GAFA1Q96PS6 74 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 OPRPNQ99935 248 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-220ENST00000641603 TRBV7-7A0A0K0K1E9 115 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 IGLC6P0CF74 106 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 LINC01587Q99440 93 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 KAAG1Q9UBP8 84 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 DAD1P61803 113 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 ARTNQ5T4W7 220 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 PCNX2A6NKB5 2137 aa3.68□□□□□ -1.82
SCN1A-220ENST00000641603 TRGV2A0A075B6R0 118 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 LST1O00453 97 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 NXPH4O95158 308 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 DOPEY2Q9Y3R5 2298 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 NDUFA4O00483 81 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 COL11A2P13942 1736 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-220ENST00000641603 IGHV1-46P01743 117 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 FAM168AQ92567 244 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms