RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 SMIM3Q9BZL3 60 aa9.6□□□□□ -0.87
LINC00339-211ENST00000641009 MRPL16Q9NX20 251 aaKnown RBP9.6□□□□□ -0.87
LINC00339-211ENST00000641009 HSPB11Q9Y547 144 aa9.6□□□□□ -0.87
LINC00339-211ENST00000641009 DNAH5Q8TE73 4624 aa9.6□□□□□ -0.87
LINC00339-211ENST00000641009 APOBP04114 4563 aaKnown RBP9.6□□□□□ -0.87
LINC00339-211ENST00000641009 SSNA1O43805 119 aa9.59□□□□□ -0.87
LINC00339-211ENST00000641009 EIF3GO75821 320 aaKnown RBP eCLIP9.59□□□□□ -0.87
LINC00339-211ENST00000641009 MPC2O95563 127 aa9.59□□□□□ -0.87
LINC00339-211ENST00000641009 IGHV3-53P01767 116 aa9.59□□□□□ -0.87
LINC00339-211ENST00000641009 UBE2L3P68036 154 aaKnown RBP9.59□□□□□ -0.87
LINC00339-211ENST00000641009 ARPC5LQ9BPX5 153 aa9.59□□□□□ -0.87
LINC00339-211ENST00000641009 CSN1S1P47710 185 aa9.59□□□□□ -0.87
LINC00339-211ENST00000641009 MUC21Q5SSG8 566 aa9.59□□□□□ -0.87
LINC00339-211ENST00000641009 ST6GAL2Q96JF0 529 aa9.59□□□□□ -0.87
LINC00339-211ENST00000641009 PAX4O43316 350 aa9.58□□□□□ -0.88
LINC00339-211ENST00000641009 PET100P0DJ07 73 aa9.58□□□□□ -0.88
LINC00339-211ENST00000641009 RPL12P30050 165 aaKnown RBP9.58□□□□□ -0.88
LINC00339-211ENST00000641009 KHDC3LQ587J8 217 aa9.58□□□□□ -0.88
LINC00339-211ENST00000641009 LYPD1Q8N2G4 141 aa9.58□□□□□ -0.88
LINC00339-211ENST00000641009 SCGB1C1Q8TD33 95 aa9.58□□□□□ -0.88
LINC00339-211ENST00000641009 KRTAP4-5Q9BYR2 181 aa9.58□□□□□ -0.88
LINC00339-211ENST00000641009 MBD2Q9UBB5 411 aa9.58□□□□□ -0.88
LINC00339-211ENST00000641009 TRBV7-9A0A0J9YWB2 115 aa9.57□□□□□ -0.88
LINC00339-211ENST00000641009 A0A1W2PPQ1 181 aa9.57□□□□□ -0.88
LINC00339-211ENST00000641009 RBAKDNA6NC62 111 aa9.57□□□□□ -0.88
LINC00339-211ENST00000641009 IFNA5P01569 189 aa9.57□□□□□ -0.88
LINC00339-211ENST00000641009 ZNF415Q09FC8 603 aa9.57□□□□□ -0.88
LINC00339-211ENST00000641009 ZNF266Q14584 549 aa9.57□□□□□ -0.88
LINC00339-211ENST00000641009 DIRC3C9JPN6 131 aa9.56□□□□□ -0.88
LINC00339-211ENST00000641009 PFDN1O60925 122 aa9.56□□□□□ -0.88
LINC00339-211ENST00000641009 TAS2R45P59539 299 aa9.56□□□□□ -0.88
LINC00339-211ENST00000641009 DEFA1P59665 94 aa9.56□□□□□ -0.88
LINC00339-211ENST00000641009 DEFA3P59666 94 aa9.56□□□□□ -0.88
LINC00339-211ENST00000641009 SPATA12Q7Z6I5 190 aa9.56□□□□□ -0.88
LINC00339-211ENST00000641009 HYLS1Q96M11 299 aa9.56□□□□□ -0.88
LINC00339-211ENST00000641009 WFDC1Q9HC57 220 aa9.56□□□□□ -0.88
LINC00339-211ENST00000641009 MDFICQ9P1T7 246 aa9.56□□□□□ -0.88
LINC00339-211ENST00000641009 ICOSQ9Y6W8 199 aa9.56□□□□□ -0.88
LINC00339-211ENST00000641009 CRYBA4P53673 196 aa9.55□□□□□ -0.88
LINC00339-211ENST00000641009 C8orf49Q96NF6 230 aa9.55□□□□□ -0.88
LINC00339-211ENST00000641009 PRO0255Q9UI72 69 aa9.55□□□□□ -0.88
LINC00339-211ENST00000641009 RPH3ALQ9UNE2 315 aa9.55□□□□□ -0.88
LINC00339-211ENST00000641009 SIVA1O15304 175 aa9.54□□□□□ -0.88
LINC00339-211ENST00000641009 LINC00315P59091 139 aa9.54□□□□□ -0.88
LINC00339-211ENST00000641009 FHL2Q14192 279 aa9.54□□□□□ -0.88
LINC00339-211ENST00000641009 TMEM183BQ1AE95 376 aa9.54□□□□□ -0.88
LINC00339-211ENST00000641009 RGS21Q2M5E4 152 aa9.54□□□□□ -0.88
LINC00339-211ENST00000641009 Q6AWC8 147 aa9.54□□□□□ -0.88
LINC00339-211ENST00000641009 TMEM183AQ8IXX5 376 aa9.54□□□□□ -0.88
LINC00339-211ENST00000641009 HHLA3Q9XRX5 114 aa9.54□□□□□ -0.88
LINC00339-211ENST00000641009 PGPA6NDG6 321 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 CDK2AP2O75956 126 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 NXPH4O95158 308 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 SFTA3P0C7M3 94 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 KRTAP10-2P60368 255 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 OTORQ9NRC9 128 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 NAGKQ9UJ70 344 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 LENEPQ9Y5L5 61 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 TRGV4A0A0C4DH28 118 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 HMGB3O15347 200 aaKnown RBP9.53□□□□□ -0.88
LINC00339-211ENST00000641009 RAB2AP61019 212 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 SLAQ13239 276 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 ACOT6Q3I5F7 207 aaPredicted RBP9.53□□□□□ -0.88
LINC00339-211ENST00000641009 FAM159AQ6UWV7 190 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 CMTM2Q8TAZ6 248 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 ZNF479Q96JC4 524 aa9.53□□□□□ -0.88
LINC00339-211ENST00000641009 A0A1W2PPV4 95 aa9.52□□□□□ -0.89
LINC00339-211ENST00000641009 BTF3P20290 206 aaKnown RBP9.52□□□□□ -0.89
LINC00339-211ENST00000641009 MRPL23Q16540 153 aaKnown RBP9.52□□□□□ -0.89
LINC00339-211ENST00000641009 LYPD5Q6UWN5 251 aa9.52□□□□□ -0.89
LINC00339-211ENST00000641009 GOLT1AQ6ZVE7 132 aa9.52□□□□□ -0.89
LINC00339-211ENST00000641009 TMED6Q8WW62 240 aa9.52□□□□□ -0.89
LINC00339-211ENST00000641009 hCG_2014768A0A024R1R8 64 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 TRGV11A0A075B6L2 103 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 TRAV8-1A0A0A6YYK1 113 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 F6UZH7 168 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 GNG5P63218 68 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 FAM74A1Q5RGS3 127 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 PQLC2Q6ZP29 291 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 Q6ZRN7 208 aaPredicted RBP9.51□□□□□ -0.89
LINC00339-211ENST00000641009 MAPKAPK5-AS1Q8N8E1 139 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 OR10G4Q8NGN3 311 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 RASL10AQ92737 203 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 TVP23CQ96ET8 276 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 SPXQ9BT56 116 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 ALG5Q9Y673 324 aa9.51□□□□□ -0.89
LINC00339-211ENST00000641009 K7EQD1 137 aa9.5□□□□□ -0.89
LINC00339-211ENST00000641009 GNRH2O43555 120 aa9.5□□□□□ -0.89
LINC00339-211ENST00000641009 TDRG1Q3Y452 100 aa9.5□□□□□ -0.89
LINC00339-211ENST00000641009 NEGR1Q7Z3B1 354 aa9.5□□□□□ -0.89
LINC00339-211ENST00000641009 OR10G9Q8NGN4 311 aa9.5□□□□□ -0.89
LINC00339-211ENST00000641009 OR10G7Q8NGN6 311 aa9.5□□□□□ -0.89
LINC00339-211ENST00000641009 TNFRSF18Q9Y5U5 241 aa9.5□□□□□ -0.89
LINC00339-211ENST00000641009 ARL14EPLP0DKL9 152 aa9.49□□□□□ -0.89
LINC00339-211ENST00000641009 IQCF2Q8IXL9 164 aa9.49□□□□□ -0.89
LINC00339-211ENST00000641009 TRAV21A0A0B4J279 112 aa9.48□□□□□ -0.89
LINC00339-211ENST00000641009 IGHV3-16A0A0C4DH30 117 aa9.48□□□□□ -0.89
LINC00339-211ENST00000641009 TYMSP04818 313 aa9.48□□□□□ -0.89
LINC00339-211ENST00000641009 GYPEP15421 78 aa9.48□□□□□ -0.89
LINC00339-211ENST00000641009 SRIP30626 198 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms