RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 FAM90A9PA6NNJ1 464 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 TMEM14DPA8MWL7 114 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 DANCRP0C864 163 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 CD28P10747 220 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 INSL4Q14641 139 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 C9orf153Q5TBE3 101 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 Q9H3A6 140 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 ZNRD1Q9P1U0 126 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 TRBV6-7A0A0A0MS04 114 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 TRAV13-2A0A0B4J235 113 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 TRAV3A0A0B4J244 114 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 DKK1O94907 266 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 CDKN1BP46527 198 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 UBE2AP49459 152 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 LAGE3Q14657 143 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 WFDC6Q9BQY6 131 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 MRPS18AQ9NVS2 196 aaKnown RBP4.01□□□□□ -1.77
SCN1A-218ENST00000640036 A0A087WWC5 75 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 ZNF876PQ49A33 203 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 THAP8Q8NA92 274 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 PSMG3-AS1Q96PY0 264 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 IGHV3-73A0A0B4J1V6 119 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 CTAG1AP78358 180 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 C2orf82Q6UX34 121 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 TEX43Q6ZNM6 134 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 ZNF503Q96F45 646 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 SMR3AQ99954 134 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 PPP1R3EQ9H7J1 279 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 TRAV8-1A0A0A6YYK1 113 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 LINC00114Q6XXX2 140 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 COQ2Q96H96 371 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 MGAM2Q2M2H8 2515 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 RHOHQ15669 191 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 Q6YL49 198 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 PUSL1Q8N0Z8 303 aaKnown RBP4□□□□□ -1.77
SCN1A-218ENST00000640036 DEFB131BA0A096LNP1 70 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 ANXA2RQ3ZCQ2 193 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 C10orf55Q5SWW7 151 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 RNF138Q8WVD3 245 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 BBC3Q96PG8 261 aaPredicted RBP4□□□□□ -1.77
SCN1A-218ENST00000640036 FBLN5Q9UBX5 448 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 COL5A1P20908 1838 aaPredicted RBP4□□□□□ -1.77
SCN1A-218ENST00000640036 IGHG4P01861 327 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 ESDP10768 282 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 C1orf194Q5T5A4 169 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 LINC00311Q8N616 119 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 OR11H6Q8NGC7 330 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 TRAV10A0A0B4J240 114 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 VCYO14598 125 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 CGAP01215 116 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 PDE6GP18545 87 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 ID3Q02535 119 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 C17orf77Q96MU5 243 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 TRGV9Q99603 122 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 PROK2Q9HC23 129 aa4□□□□□ -1.77
SCN1A-218ENST00000640036 IGHV7-4-1A0A0J9YVY3 117 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 C1orf159Q96HA4 380 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 TRBV5-7A0A0A0MS05 114 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 C16orf74Q96GX8 76 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 FOXI2Q6ZQN5 318 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 SPTSSBQ8NFR3 76 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 PYGO2Q9BRQ0 406 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 IGKCP01834 107 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 APOHP02749 345 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-218ENST00000640036 ATP5EP56381 51 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-218ENST00000640036 ZNF880Q6PDB4 577 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 NUP210LQ5VU65 1888 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 GAGE12JA6NER3 117 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 KNCNA6PVL3 124 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 C15orf62A8K5M9 175 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 PMS2P5A8MQ11 134 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 CCL1P22362 96 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 GAGE1Q13065 139 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 GAGE4Q13068 117 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 GAGE5Q13069 117 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 STPG4Q8N801 248 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 RSPO3Q9BXY4 272 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-218ENST00000640036 NOP10Q9NPE3 64 aaKnown RBP3.99□□□□□ -1.77
SCN1A-218ENST00000640036 ATRQ13535 2644 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 NDUFB4O95168 129 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 CRYBB3P26998 211 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 RND3P61587 244 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 GPHB5Q86YW7 130 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 SMIM2Q9BVW6 85 aa3.99□□□□□ -1.77
SCN1A-218ENST00000640036 GRIFINA4D1Z8 144 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 SRP19P09132 144 aaKnown RBP3.98□□□□□ -1.77
SCN1A-218ENST00000640036 RNF152Q8N8N0 203 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 TMEM243Q9BU79 118 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 PRR13Q9NZ81 148 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 A0A096LPF7 62 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 IZUMO1RA6ND01 250 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 GYPEP15421 78 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 IL36BQ9NZH7 164 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 HECTD1Q9ULT8 2610 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 K7EMI3 77 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 TAX1BP3O14907 124 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 NPC2P61916 151 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 BVES-AS1Q5T3Y7 98 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 XAF1Q6GPH4 301 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 hADV29S1A0JD25 119 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms