RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 K7EIM0 57 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 TAX1BP3O14907 124 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 PRTN3P24158 256 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 CNTFRP26992 372 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 OCIAD2Q56VL3 154 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 LDLRAD2Q5SZI1 272 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 FAM120AOSQ5T036 256 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 OR11H6Q8NGC7 330 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 METTL26Q96S19 204 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 CST9LQ9H4G1 147 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 DIDO1Q9BTC0 2240 aaKnown RBP3.12□□□□□ -1.91
SCN1A-214ENST00000637038 A0A087X0K7 114 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 C9orf118A6NHY6 69 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 TNFRSF6BO95407 300 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 IFI27P40305 119 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-214ENST00000637038 LYRM7Q5U5X0 104 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 LINC00322Q6ZN03 302 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-214ENST00000637038 ERASQ7Z444 233 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 KIR3DL3Q8N743 410 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 PRR25Q96S07 402 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 UBTD1Q9HAC8 227 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 SIGLEC8Q9NYZ4 499 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 U3KQK5 164 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 ZFYVE26Q68DK2 2539 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 RBAKDNA6NC62 111 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 LINC01549A6NIU2 74 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 ZNF207O43670 478 aaKnown RBP3.12□□□□□ -1.91
SCN1A-214ENST00000637038 DPM2O94777 84 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 NDUFA3O95167 84 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 PPP1R17O96001 155 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 FCER1GP30273 86 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 ZNF138P52744 262 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 ZNF672Q499Z4 452 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-214ENST00000637038 MRPL51Q4U2R6 128 aaKnown RBP3.12□□□□□ -1.91
SCN1A-214ENST00000637038 TTC9CQ8N5M4 171 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 OR2K2Q8NGT1 345 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 EEF1AKMT3Q96AZ1 226 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 MCRIP2Q9BUT9 160 aaKnown RBP3.12□□□□□ -1.91
SCN1A-214ENST00000637038 NPFFR1Q9GZQ6 430 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 ZNF469Q96JG9 3925 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-214ENST00000637038 HEATR1Q9H583 2144 aaKnown RBP3.12□□□□□ -1.91
SCN1A-214ENST00000637038 IGLV2-11P01706 119 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 LINC00173Q6ZV60 143 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 AMN1Q8IY45 258 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 MRPL53Q96EL3 112 aaKnown RBP3.12□□□□□ -1.91
SCN1A-214ENST00000637038 URB1-AS1Q96HZ7 61 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 RITA1Q96K30 269 aa3.12□□□□□ -1.91
SCN1A-214ENST00000637038 ZNF292O60281 2723 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 A0A0G2JLM5 398 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 GAGE12BA1L429 117 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 VWC2LB2RUY7 222 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 IGKCP01834 107 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 SCGB1A1P11684 91 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 LEPP41159 167 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 SPCS1Q9Y6A9 102 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 IGLV11-55A0A075B6I3 123 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 IGKV2-40A0A087WW87 121 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-214ENST00000637038 H3BUT2 72 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 K7EP34 96 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 M0R3E3 92 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 IGKV2D-40P01614 121 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-214ENST00000637038 KIR3DS1Q14943 382 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 ASPHD1Q5U4P2 390 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 SPANXN1Q5VSR9 72 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 COX8CQ7Z4L0 72 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 FAM110DQ8TAY7 271 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-214ENST00000637038 HIGD1BQ9P298 99 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 TMEM213A2RRL7 107 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 LY6LH3BQJ8 138 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 HLA-DRB4P13762 266 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 GCSHP23434 173 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 CD24P25063 80 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 TAL2Q16559 108 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 Q8N8P6 123 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 C8orf49Q96NF6 230 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 UFC1Q9Y3C8 167 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 TSSC4Q9Y5U2 329 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-214ENST00000637038 HLA-DRB4X5D2U9 266 aa3.11□□□□□ -1.91
SCN1A-214ENST00000637038 SMIM17P0DL12 118 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 S100A4P26447 101 aaKnown RBP3.1□□□□□ -1.91
SCN1A-214ENST00000637038 PLNP26678 52 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 HERVK_113P61574 105 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 ORMDL2Q53FV1 153 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 VMO1Q7Z5L0 202 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 ZNF575Q86XF7 245 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 LY6G5BQ8NDX9 201 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 CRYBG3Q68DQ2 2970 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 NDUFS7O75251 213 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 LAGE3Q14657 143 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 ECSCRQ19T08 205 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 KLF17Q5JT82 389 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-214ENST00000637038 SAMD13Q5VXD3 122 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 PIFOQ8TCI5 191 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 MRAP2Q96G30 205 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 ANKRD17O75179 2603 aaKnown RBP3.1□□□□□ -1.91
SCN1A-214ENST00000637038 TRBV7-1A0A0A6YYK4 115 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 ATP5G2Q06055 141 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 SAMD5Q5TGI4 173 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 C9orf139Q6ZV77 190 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 PRIMA1Q86XR5 153 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms