RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 GNB1LQ9BYB4 327 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 WNK1Q9H4A3 2382 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 A0A0J9YX75 114 aa7.92□□□□□ -1.14
CLN3-248ENST00000636355 HLA-DQA1P01909 254 aa7.92□□□□□ -1.14
CLN3-248ENST00000636355 S100A8P05109 93 aa7.92□□□□□ -1.14
CLN3-248ENST00000636355 ZNF688P0C7X2 276 aa7.92□□□□□ -1.14
CLN3-248ENST00000636355 TSPOP30536 169 aa7.92□□□□□ -1.14
CLN3-248ENST00000636355 LEPP41159 167 aa7.92□□□□□ -1.14
CLN3-248ENST00000636355 CMC4P56277 68 aaPredicted RBP7.92□□□□□ -1.14
CLN3-248ENST00000636355 PSMG4Q5JS54 123 aa7.92□□□□□ -1.14
CLN3-248ENST00000636355 ACTL10Q5JWF8 245 aa7.92□□□□□ -1.14
CLN3-248ENST00000636355 LINC00322Q6ZN03 302 aaPredicted RBP7.92□□□□□ -1.14
CLN3-248ENST00000636355 C11orf44Q8N8P7 122 aa7.92□□□□□ -1.14
CLN3-248ENST00000636355 DUX3Q96PT4 197 aa7.92□□□□□ -1.14
CLN3-248ENST00000636355 CITED1Q99966 193 aa7.92□□□□□ -1.14
CLN3-248ENST00000636355 TRAV21A0A0B4J279 112 aa7.91□□□□□ -1.14
CLN3-248ENST00000636355 TMEM189A5PLL7 270 aa7.91□□□□□ -1.14
CLN3-248ENST00000636355 KLLNB2CW77 178 aa7.91□□□□□ -1.14
CLN3-248ENST00000636355 PF4P02776 101 aa7.91□□□□□ -1.14
CLN3-248ENST00000636355 CTRLP40313 264 aa7.91□□□□□ -1.14
CLN3-248ENST00000636355 CRIP1P50238 77 aa7.91□□□□□ -1.14
CLN3-248ENST00000636355 INSL3P51460 131 aa7.91□□□□□ -1.14
CLN3-248ENST00000636355 ERCC8Q13216 396 aa7.91□□□□□ -1.14
CLN3-248ENST00000636355 ZFAND2AQ8N6M9 145 aa7.91□□□□□ -1.14
CLN3-248ENST00000636355 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.91□□□□□ -1.14
CLN3-248ENST00000636355 NUP35Q8NFH5 326 aa7.91□□□□□ -1.14
CLN3-248ENST00000636355 IGKV3-7A0A075B6H7 116 aa7.9□□□□□ -1.14
CLN3-248ENST00000636355 A0A1B0GXF2 115 aa7.9□□□□□ -1.14
CLN3-248ENST00000636355 PHOX2AO14813 284 aa7.9□□□□□ -1.14
CLN3-248ENST00000636355 CA1P00915 261 aaPredicted RBP7.9□□□□□ -1.14
CLN3-248ENST00000636355 IGLV1-51P01701 117 aa7.9□□□□□ -1.14
CLN3-248ENST00000636355 HLA-DRB4P13762 266 aa7.9□□□□□ -1.14
CLN3-248ENST00000636355 HBBP68871 147 aa7.9□□□□□ -1.14
CLN3-248ENST00000636355 CD300EQ496F6 205 aaPredicted RBP7.9□□□□□ -1.14
CLN3-248ENST00000636355 LINC00482Q8N8I6 264 aa7.9□□□□□ -1.14
CLN3-248ENST00000636355 BORCS7Q96B45 105 aa7.9□□□□□ -1.14
CLN3-248ENST00000636355 CNFNQ9BYD5 112 aa7.9□□□□□ -1.14
CLN3-248ENST00000636355 HLA-DRB4X5D2U9 266 aa7.9□□□□□ -1.14
CLN3-248ENST00000636355 JMJD1CQ15652 2540 aa7.9□□□□□ -1.15
CLN3-248ENST00000636355 CUBNO60494 3623 aa7.89□□□□□ -1.15
CLN3-248ENST00000636355 DNHD1Q96M86 4753 aa7.89□□□□□ -1.15
CLN3-248ENST00000636355 A0A1B0GUT8 65 aa7.89□□□□□ -1.15
CLN3-248ENST00000636355 F2Z2F3 143 aa7.89□□□□□ -1.15
CLN3-248ENST00000636355 MED14OSP0DP75 135 aa7.89□□□□□ -1.15
CLN3-248ENST00000636355 TCL1AP56279 114 aa7.89□□□□□ -1.15
CLN3-248ENST00000636355 KRTAP10-3P60369 221 aa7.89□□□□□ -1.15
CLN3-248ENST00000636355 NSUN5P1Q3KNT7 163 aa7.89□□□□□ -1.15
CLN3-248ENST00000636355 GATD1Q8NB37 220 aa7.89□□□□□ -1.15
CLN3-248ENST00000636355 GTSF1Q8WW33 167 aa7.89□□□□□ -1.15
CLN3-248ENST00000636355 ZNF256Q9Y2P7 627 aaPredicted RBP7.89□□□□□ -1.15
CLN3-248ENST00000636355 SAP30O75446 220 aa7.88□□□□□ -1.15
CLN3-248ENST00000636355 AMBPP02760 352 aa7.88□□□□□ -1.15
CLN3-248ENST00000636355 TRGC2P03986 189 aa7.88□□□□□ -1.15
CLN3-248ENST00000636355 GPX1P07203 203 aa7.88□□□□□ -1.15
CLN3-248ENST00000636355 IGLC6P0CF74 106 aa7.88□□□□□ -1.15
CLN3-248ENST00000636355 TFPI2P48307 235 aa7.88□□□□□ -1.15
CLN3-248ENST00000636355 ZNF80P51504 273 aaPredicted RBP7.88□□□□□ -1.15
CLN3-248ENST00000636355 DNLZQ5SXM8 178 aa7.88□□□□□ -1.15
CLN3-248ENST00000636355 WFDC3Q8IUB2 231 aa7.88□□□□□ -1.15
CLN3-248ENST00000636355 MCRIP2Q9BUT9 160 aaKnown RBP7.88□□□□□ -1.15
CLN3-248ENST00000636355 MAP6D1Q9H9H5 199 aa7.88□□□□□ -1.15
CLN3-248ENST00000636355 SNURFLB1AK76 121 aa7.87□□□□□ -1.15
CLN3-248ENST00000636355 S100A6P06703 90 aa7.87□□□□□ -1.15
CLN3-248ENST00000636355 OR5AL1P0C617 328 aa7.87□□□□□ -1.15
CLN3-248ENST00000636355 CDKN1BP46527 198 aa7.87□□□□□ -1.15
CLN3-248ENST00000636355 RIGQ13278 110 aa7.87□□□□□ -1.15
CLN3-248ENST00000636355 TDRG1Q3Y452 100 aa7.87□□□□□ -1.15
CLN3-248ENST00000636355 TMEM136Q6ZRR5 245 aa7.87□□□□□ -1.15
CLN3-248ENST00000636355 FER1L6-AS1Q8NA97 138 aa7.87□□□□□ -1.15
CLN3-248ENST00000636355 KCNS1Q96KK3 526 aa7.87□□□□□ -1.15
CLN3-248ENST00000636355 C20orf144Q9BQM9 153 aa7.87□□□□□ -1.15
CLN3-248ENST00000636355 TRAPPC1Q9Y5R8 145 aa7.87□□□□□ -1.15
CLN3-248ENST00000636355 ATRQ13535 2644 aa7.87□□□□□ -1.15
CLN3-248ENST00000636355 C7orf71A4D174 169 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 F6UB75 175 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 HIST1H2BKO60814 126 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 ORM1P02763 201 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 HIST1H2BJP06899 126 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 HIST1H2BOP23527 126 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 HIST1H2BBP33778 126 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 HIST1H2BDP58876 126 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 DEFB131AP59861 70 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 HIST1H2BCP62807 126 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 HIST2H2BEQ16778 126 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 ODF3L2Q3SX64 289 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 COA6Q5JTJ3 125 aaKnown RBP7.86□□□□□ -1.15
CLN3-248ENST00000636355 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.86□□□□□ -1.15
CLN3-248ENST00000636355 MRPL54Q6P161 138 aaKnown RBP7.86□□□□□ -1.15
CLN3-248ENST00000636355 AMTNQ6UX39 209 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 PRIMA1Q86XR5 153 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 HIST1H2BHQ93079 126 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 HIST1H2BNQ99877 126 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 HIST1H2BMQ99879 126 aa7.86□□□□□ -1.15
CLN3-248ENST00000636355 NIPBLQ6KC79 2804 aaeCLIP7.85□□□□□ -1.15
CLN3-248ENST00000636355 IGKV3D-20A0A0C4DH25 116 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 OR11H12B2RN74 326 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 H3BMM0 161 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 WIPF1O43516 503 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 SNAI2O43623 268 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 ZNF705DP0CH99 300 aaPredicted RBP7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms