RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 NMBP08949 121 aa13.03□□□□□ -0.32
CLN3-243ENST00000635973 CRISP2P16562 243 aa13.03□□□□□ -0.32
CLN3-243ENST00000635973 PPT1P50897 306 aa13.03□□□□□ -0.32
CLN3-243ENST00000635973 TAS2R60P59551 318 aa13.03□□□□□ -0.32
CLN3-243ENST00000635973 ALKAL2Q6UX46 152 aa13.03□□□□□ -0.32
CLN3-243ENST00000635973 ATG101Q9BSB4 218 aa13.03□□□□□ -0.32
CLN3-243ENST00000635973 NDFIP1Q9BT67 221 aa13.03□□□□□ -0.32
CLN3-243ENST00000635973 PAGE4O60829 102 aa13.02□□□□□ -0.33
CLN3-243ENST00000635973 SGK494Q96LW2 274 aa13.02□□□□□ -0.33
CLN3-243ENST00000635973 ARL2-SNX15V9GYD0 113 aa13.02□□□□□ -0.33
CLN3-243ENST00000635973 PEX7O00628 323 aa13.01□□□□□ -0.33
CLN3-243ENST00000635973 ZFAND2AQ8N6M9 145 aa13.01□□□□□ -0.33
CLN3-243ENST00000635973 C2CD4CQ8TF44 421 aa13.01□□□□□ -0.33
CLN3-243ENST00000635973 LENEPQ9Y5L5 61 aa13.01□□□□□ -0.33
CLN3-243ENST00000635973 F6UZH7 168 aa13□□□□□ -0.33
CLN3-243ENST00000635973 PRM2P04554 102 aa13□□□□□ -0.33
CLN3-243ENST00000635973 ATP5G3P48201 142 aa13□□□□□ -0.33
CLN3-243ENST00000635973 PRR9Q5T870 116 aa13□□□□□ -0.33
CLN3-243ENST00000635973 LGALS9CQ6DKI2 356 aa13□□□□□ -0.33
CLN3-243ENST00000635973 PRNTQ86SH4 94 aa13□□□□□ -0.33
CLN3-243ENST00000635973 CCDC28AQ8IWP9 274 aa13□□□□□ -0.33
CLN3-243ENST00000635973 HIST1H2BAQ96A08 127 aa13□□□□□ -0.33
CLN3-243ENST00000635973 GNG13Q9P2W3 67 aa13□□□□□ -0.33
CLN3-243ENST00000635973 TRAV1-1A0A0B4J248 108 aa12.99□□□□□ -0.33
CLN3-243ENST00000635973 FBLL1A6NHQ2 334 aaKnown RBP12.99□□□□□ -0.33
CLN3-243ENST00000635973 FLI1Q01543 452 aaPredicted RBP12.99□□□□□ -0.33
CLN3-243ENST00000635973 TMEM75Q8N9X5 138 aa12.99□□□□□ -0.33
CLN3-243ENST00000635973 C16orf74Q96GX8 76 aa12.99□□□□□ -0.33
CLN3-243ENST00000635973 PYGO2Q9BRQ0 406 aa12.99□□□□□ -0.33
CLN3-243ENST00000635973 TCEAL7Q9BRU2 100 aa12.99□□□□□ -0.33
CLN3-243ENST00000635973 TREM1Q9NP99 234 aa12.99□□□□□ -0.33
CLN3-243ENST00000635973 MANBALQ9NQG1 85 aa12.99□□□□□ -0.33
CLN3-243ENST00000635973 PSG8Q9UQ74 426 aa12.99□□□□□ -0.33
CLN3-243ENST00000635973 SPART-AS1P0CW21 52 aa12.98□□□□□ -0.33
CLN3-243ENST00000635973 CELA1Q9UNI1 258 aa12.98□□□□□ -0.33
CLN3-243ENST00000635973 TRAV34A0A0B4J273 112 aa12.97□□□□□ -0.33
CLN3-243ENST00000635973 TEX48A0A1B0GUV7 120 aa12.97□□□□□ -0.33
CLN3-243ENST00000635973 C11orf94C9JXX5 98 aa12.97□□□□□ -0.33
CLN3-243ENST00000635973 RGS13O14921 159 aa12.97□□□□□ -0.33
CLN3-243ENST00000635973 IFNA1P01562 189 aa12.97□□□□□ -0.33
CLN3-243ENST00000635973 AZU1P20160 251 aa12.97□□□□□ -0.33
CLN3-243ENST00000635973 TCTAP57738 103 aa12.97□□□□□ -0.33
CLN3-243ENST00000635973 TMEM263Q8WUH6 116 aaKnown RBP12.97□□□□□ -0.33
CLN3-243ENST00000635973 CBY3A6NI87 242 aa12.96□□□□□ -0.33
CLN3-243ENST00000635973 ZNF324O75467 553 aaPredicted RBP12.96□□□□□ -0.33
CLN3-243ENST00000635973 AKR1C3P42330 323 aa12.96□□□□□ -0.33
CLN3-243ENST00000635973 UBE2G1P62253 170 aa12.96□□□□□ -0.33
CLN3-243ENST00000635973 CCL20P78556 96 aa12.96□□□□□ -0.33
CLN3-243ENST00000635973 FAM222AQ5U5X8 452 aa12.96□□□□□ -0.33
CLN3-243ENST00000635973 ZNF493Q6ZR52 646 aa12.96□□□□□ -0.33
CLN3-243ENST00000635973 LINC00479Q96M42 142 aa12.96□□□□□ -0.33
CLN3-243ENST00000635973 IGLL5B9A064 214 aa12.95□□□□□ -0.34
CLN3-243ENST00000635973 IGLV2-11P01706 119 aa12.95□□□□□ -0.34
CLN3-243ENST00000635973 BLOC1S1P78537 153 aa12.95□□□□□ -0.34
CLN3-243ENST00000635973 ZNF767PQ75MW2 155 aa12.95□□□□□ -0.34
CLN3-243ENST00000635973 EIF4E3Q8N5X7 224 aaKnown RBP12.95□□□□□ -0.34
CLN3-243ENST00000635973 TVP23CQ96ET8 276 aa12.95□□□□□ -0.34
CLN3-243ENST00000635973 DKK2Q9UBU2 259 aa12.95□□□□□ -0.34
CLN3-243ENST00000635973 NAGKQ9UJ70 344 aa12.95□□□□□ -0.34
CLN3-243ENST00000635973 IGHV1OR15-1A0A075B7D0 117 aa12.94□□□□□ -0.34
CLN3-243ENST00000635973 MUC21Q5SSG8 566 aa12.94□□□□□ -0.34
CLN3-243ENST00000635973 SAPCD1Q5SSQ6 148 aa12.94□□□□□ -0.34
CLN3-243ENST00000635973 Q6AWC8 147 aa12.94□□□□□ -0.34
CLN3-243ENST00000635973 Q86TA4 180 aa12.94□□□□□ -0.34
CLN3-243ENST00000635973 ZNF680Q8NEM1 530 aa12.94□□□□□ -0.34
CLN3-243ENST00000635973 RNASE8Q8TDE3 154 aaKnown RBP12.94□□□□□ -0.34
CLN3-243ENST00000635973 FMC1Q96HJ9 113 aa12.94□□□□□ -0.34
CLN3-243ENST00000635973 C8orf49Q96NF6 230 aa12.94□□□□□ -0.34
CLN3-243ENST00000635973 TRAV21A0A0B4J279 112 aa12.93□□□□□ -0.34
CLN3-243ENST00000635973 SCO2A0A1W2PP80 73 aa12.93□□□□□ -0.34
CLN3-243ENST00000635973 SNURFLB1AK76 121 aa12.93□□□□□ -0.34
CLN3-243ENST00000635973 SMUG1Q53HV7 270 aa12.93□□□□□ -0.34
CLN3-243ENST00000635973 Q6ZQT7 251 aa12.93□□□□□ -0.34
CLN3-243ENST00000635973 LINC00467Q9BRT7 94 aa12.93□□□□□ -0.34
CLN3-243ENST00000635973 LYRM9A8MSI8 78 aa12.92□□□□□ -0.34
CLN3-243ENST00000635973 GCGP01275 180 aa12.92□□□□□ -0.34
CLN3-243ENST00000635973 DAD1P61803 113 aa12.92□□□□□ -0.34
CLN3-243ENST00000635973 FAM159AQ6UWV7 190 aa12.92□□□□□ -0.34
CLN3-243ENST00000635973 Q6ZTC4 211 aa12.92□□□□□ -0.34
CLN3-243ENST00000635973 TIMM8BQ9Y5J9 83 aaPredicted RBP12.92□□□□□ -0.34
CLN3-243ENST00000635973 TRAV10A0A0B4J240 114 aa12.91□□□□□ -0.34
CLN3-243ENST00000635973 PLAC8L1A1L4L8 177 aa12.91□□□□□ -0.34
CLN3-243ENST00000635973 BCL2P10415 239 aa12.91□□□□□ -0.34
CLN3-243ENST00000635973 C12orf74Q32Q52 190 aa12.91□□□□□ -0.34
CLN3-243ENST00000635973 ANXA2RQ3ZCQ2 193 aa12.91□□□□□ -0.34
CLN3-243ENST00000635973 TXNDC17Q9BRA2 123 aa12.91□□□□□ -0.34
CLN3-243ENST00000635973 NOP10Q9NPE3 64 aaKnown RBP12.91□□□□□ -0.34
CLN3-243ENST00000635973 S100A9P06702 114 aaKnown RBP12.9□□□□□ -0.34
CLN3-243ENST00000635973 TMEM183BQ1AE95 376 aa12.9□□□□□ -0.34
CLN3-243ENST00000635973 FRAS1Q86XX4 4008 aa12.9□□□□□ -0.34
CLN3-243ENST00000635973 TRGV11A0A075B6L2 103 aa12.89□□□□□ -0.35
CLN3-243ENST00000635973 DEFB130BP0DP73 79 aa12.89□□□□□ -0.35
CLN3-243ENST00000635973 DEFB130AP0DP74 79 aa12.89□□□□□ -0.35
CLN3-243ENST00000635973 TAGLN2P37802 199 aaKnown RBP12.89□□□□□ -0.35
CLN3-243ENST00000635973 MEF2BQ02080 365 aaPredicted RBP12.89□□□□□ -0.35
CLN3-243ENST00000635973 ZNF415Q09FC8 603 aa12.89□□□□□ -0.35
CLN3-243ENST00000635973 GSN-AS1Q9NRJ2 163 aa12.89□□□□□ -0.35
CLN3-243ENST00000635973 TP53TG3Q9ULZ0 132 aa12.89□□□□□ -0.35
CLN3-243ENST00000635973 ZFP30Q9Y2G7 519 aa12.89□□□□□ -0.35
CLN3-243ENST00000635973 KLF12Q9Y4X4 402 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms