RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 CITED1Q99966 193 aa10.76□□□□□ -0.69
CLN3-242ENST00000635958 A0A1W2PRX2 142 aa10.75□□□□□ -0.69
CLN3-242ENST00000635958 GP9P14770 177 aa10.75□□□□□ -0.69
CLN3-242ENST00000635958 BTF3P20290 206 aaKnown RBP10.75□□□□□ -0.69
CLN3-242ENST00000635958 G0S2P27469 103 aa10.75□□□□□ -0.69
CLN3-242ENST00000635958 TCL1AP56279 114 aa10.75□□□□□ -0.69
CLN3-242ENST00000635958 SYNJ2BPP57105 145 aa10.75□□□□□ -0.69
CLN3-242ENST00000635958 TDRG1Q3Y452 100 aa10.75□□□□□ -0.69
CLN3-242ENST00000635958 TM4SF20Q53R12 229 aa10.75□□□□□ -0.69
CLN3-242ENST00000635958 BPIFA4PQ86YQ2 179 aa10.75□□□□□ -0.69
CLN3-242ENST00000635958 MDFIQ99750 246 aa10.75□□□□□ -0.69
CLN3-242ENST00000635958 ALKBH7Q9BT30 221 aaPredicted RBP10.75□□□□□ -0.69
CLN3-242ENST00000635958 TRAV9-2A0A087WT02 112 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 IGHV7-4-1A0A0J9YVY3 117 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 A0A1B0GXF2 115 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 ZNF207O43670 478 aaKnown RBP10.74□□□□□ -0.69
CLN3-242ENST00000635958 SPINK4O60575 86 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 APOHP02749 345 aaPredicted RBP10.74□□□□□ -0.69
CLN3-242ENST00000635958 OR5AL1P0C617 328 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 FRMD6-AS1P0C7T7 363 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 SLURP1P55000 103 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 KIAA1644Q3SXP7 199 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 C5orf17Q8NAS9 161 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 NHLRC2Q8NBF2 726 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 SMPXQ9UHP9 88 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 TMEM213A2RRL7 107 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 SLC25A5P05141 298 aaKnown RBP10.74□□□□□ -0.69
CLN3-242ENST00000635958 RPL7P18124 248 aaKnown RBP10.74□□□□□ -0.69
CLN3-242ENST00000635958 CD33P20138 364 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 HBBP68871 147 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 C16orf54Q6UWD8 224 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 RCHY1Q96PM5 261 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 DUX3Q96PT4 197 aa10.74□□□□□ -0.69
CLN3-242ENST00000635958 RPP21Q9H633 154 aaKnown RBP10.74□□□□□ -0.69
CLN3-242ENST00000635958 M0R2Z0 102 aa10.73□□□□□ -0.69
CLN3-242ENST00000635958 NBEAP1P0C6P0 100 aa10.73□□□□□ -0.69
CLN3-242ENST00000635958 PYYP10082 97 aa10.73□□□□□ -0.69
CLN3-242ENST00000635958 Q6ZN92 141 aa10.73□□□□□ -0.69
CLN3-242ENST00000635958 ORAOV1Q8WV07 137 aa10.73□□□□□ -0.69
CLN3-242ENST00000635958 DLX4Q92988 240 aaPredicted RBP10.73□□□□□ -0.69
CLN3-242ENST00000635958 DAZAP1Q96EP5 407 aaKnown RBP10.73□□□□□ -0.69
CLN3-242ENST00000635958 MLST8Q9BVC4 326 aa10.73□□□□□ -0.69
CLN3-242ENST00000635958 LAMTOR2Q9Y2Q5 125 aa10.73□□□□□ -0.69
CLN3-242ENST00000635958 CBY1Q9Y3M2 126 aa10.73□□□□□ -0.69
CLN3-242ENST00000635958 STAB1Q9NY15 2570 aa10.73□□□□□ -0.69
CLN3-242ENST00000635958 SLAQ13239 276 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 NSUN5P1Q3KNT7 163 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 OR2D3Q8NGH3 330 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 GLMPQ8WWB7 406 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 A0A1B0GW15 77 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 PGPA6NDG6 321 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 C2orf70A6NJV1 201 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 CHEK1O14757 476 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 OR9G4Q8NGQ1 327 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 TMEM158Q8WZ71 300 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 RHPN1-AS1Q9BWJ2 59 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 PEMTQ9UBM1 199 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 SMAD5-AS1Q9Y6J3 95 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 WNK1Q9H4A3 2382 aa10.72□□□□□ -0.69
CLN3-242ENST00000635958 IGHV3-49A0A0A0MS15 119 aa10.71□□□□□ -0.69
CLN3-242ENST00000635958 HIGD1CA8MV81 97 aa10.71□□□□□ -0.69
CLN3-242ENST00000635958 LTAP01374 205 aa10.71□□□□□ -0.69
CLN3-242ENST00000635958 P01737 135 aa10.71□□□□□ -0.69
CLN3-242ENST00000635958 NTF3P20783 257 aa10.71□□□□□ -0.69
CLN3-242ENST00000635958 BMI1P35226 326 aa10.71□□□□□ -0.69
CLN3-242ENST00000635958 OR4F17Q8NGA8 305 aa10.71□□□□□ -0.69
CLN3-242ENST00000635958 C17orf77Q96MU5 243 aa10.71□□□□□ -0.69
CLN3-242ENST00000635958 NDFIP1Q9BT67 221 aa10.71□□□□□ -0.69
CLN3-242ENST00000635958 ZNF747Q9BV97 191 aa10.71□□□□□ -0.69
CLN3-242ENST00000635958 OTORQ9NRC9 128 aa10.71□□□□□ -0.69
CLN3-242ENST00000635958 IGHV3OR16-13A0A075B7E8 117 aa10.7□□□□□ -0.7
CLN3-242ENST00000635958 A0A087X0K7 114 aa10.7□□□□□ -0.7
CLN3-242ENST00000635958 IGHV3-74A0A0B4J1X5 117 aa10.7□□□□□ -0.7
CLN3-242ENST00000635958 IGHV3-66A0A0C4DH42 116 aa10.7□□□□□ -0.7
CLN3-242ENST00000635958 C19orf71A6NCJ1 209 aa10.7□□□□□ -0.7
CLN3-242ENST00000635958 CRXO43186 299 aaPredicted RBP10.7□□□□□ -0.7
CLN3-242ENST00000635958 ADAMTSL5Q6ZMM2 481 aa10.7□□□□□ -0.7
CLN3-242ENST00000635958 RBPMS2Q6ZRY4 209 aaKnown RBP10.7□□□□□ -0.7
CLN3-242ENST00000635958 TMEM70Q9BUB7 260 aa10.7□□□□□ -0.7
CLN3-242ENST00000635958 ST20Q9HBF5 79 aa10.7□□□□□ -0.7
CLN3-242ENST00000635958 TRBV19A0A075B6N1 114 aa10.7□□□□□ -0.7
CLN3-242ENST00000635958 EDN2P20800 178 aa10.7□□□□□ -0.7
CLN3-242ENST00000635958 PDE6HQ13956 83 aa10.7□□□□□ -0.7
CLN3-242ENST00000635958 NPIPB6E9PJ23 425 aa10.69□□□□□ -0.7
CLN3-242ENST00000635958 CSN3P07498 182 aa10.69□□□□□ -0.7
CLN3-242ENST00000635958 TSPOP30536 169 aa10.69□□□□□ -0.7
CLN3-242ENST00000635958 FOXA3P55318 350 aaPredicted RBP10.69□□□□□ -0.7
CLN3-242ENST00000635958 LYPD1Q8N2G4 141 aa10.69□□□□□ -0.7
CLN3-242ENST00000635958 LINC00479Q96M42 142 aa10.69□□□□□ -0.7
CLN3-242ENST00000635958 SIGLEC8Q9NYZ4 499 aa10.69□□□□□ -0.7
CLN3-242ENST00000635958 OVOL1O14753 267 aa10.68□□□□□ -0.7
CLN3-242ENST00000635958 TCRAP04437 139 aa10.68□□□□□ -0.7
CLN3-242ENST00000635958 BATFQ16520 125 aa10.68□□□□□ -0.7
CLN3-242ENST00000635958 RNASEKQ6P5S7 137 aaKnown RBP10.68□□□□□ -0.7
CLN3-242ENST00000635958 SIGLEC15Q6ZMC9 328 aa10.68□□□□□ -0.7
CLN3-242ENST00000635958 FAM19A2Q8N3H0 131 aa10.68□□□□□ -0.7
CLN3-242ENST00000635958 TRAV34A0A0B4J273 112 aa10.68□□□□□ -0.7
CLN3-242ENST00000635958 CA1P00915 261 aaPredicted RBP10.68□□□□□ -0.7
CLN3-242ENST00000635958 GDF5OSQ5U4N7 250 aa10.68□□□□□ -0.7
CLN3-242ENST00000635958 Q6AWC8 147 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms