RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 Q8N8P6 123 aa9.77□□□□□ -0.85
LINC00540-203ENST00000631321 LENEPQ9Y5L5 61 aa9.77□□□□□ -0.85
LINC00540-203ENST00000631321 SNAI2O43623 268 aa9.76□□□□□ -0.85
LINC00540-203ENST00000631321 ZNF207O43670 478 aaKnown RBP9.76□□□□□ -0.85
LINC00540-203ENST00000631321 DKK2Q9UBU2 259 aa9.76□□□□□ -0.85
LINC00540-203ENST00000631321 IGHV3-49A0A0A0MS15 119 aa9.76□□□□□ -0.85
LINC00540-203ENST00000631321 C9orf139Q6ZV77 190 aa9.76□□□□□ -0.85
LINC00540-203ENST00000631321 OR2K2Q8NGT1 345 aa9.76□□□□□ -0.85
LINC00540-203ENST00000631321 SPTBN1Q01082 2364 aaKnown RBP9.76□□□□□ -0.85
LINC00540-203ENST00000631321 IGHV1-69DA0A0B4J2H0 117 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 CBY3A6NI87 242 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 BRI3O95415 125 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 IGHV1-69P01742 117 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 TRGV3P03979 118 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 GATA1P15976 413 aaPredicted RBP9.75□□□□□ -0.85
LINC00540-203ENST00000631321 EVI2AP22794 236 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 HSD52Q0P140 79 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 ODF1Q14990 250 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 TMEM219Q86XT9 240 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 OR4X2Q8NGF9 303 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 RNASE8Q8TDE3 154 aaKnown RBP9.75□□□□□ -0.85
LINC00540-203ENST00000631321 PEF1Q9UBV8 284 aaKnown RBP9.75□□□□□ -0.85
LINC00540-203ENST00000631321 HIVEP3Q5T1R4 2406 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 A1L4Q6 167 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 IGHV4-39P01824 125 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 ADAMTSL5Q6ZMM2 481 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 NRACQ8N912 160 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 MEGF9Q9H1U4 602 aa9.75□□□□□ -0.85
LINC00540-203ENST00000631321 C7orf71A4D174 169 aa9.74□□□□□ -0.85
LINC00540-203ENST00000631321 C19orf84I3L1E1 186 aa9.74□□□□□ -0.85
LINC00540-203ENST00000631321 AMMECR1LQ6DCA0 310 aa9.74□□□□□ -0.85
LINC00540-203ENST00000631321 SMIM15Q7Z3B0 74 aa9.74□□□□□ -0.85
LINC00540-203ENST00000631321 ERASQ7Z444 233 aa9.74□□□□□ -0.85
LINC00540-203ENST00000631321 C16orf92Q96LL3 132 aa9.74□□□□□ -0.85
LINC00540-203ENST00000631321 COL25A1Q9BXS0 654 aaPredicted RBP9.74□□□□□ -0.85
LINC00540-203ENST00000631321 IGF1P05019 195 aa9.74□□□□□ -0.85
LINC00540-203ENST00000631321 LY6DQ14210 128 aa9.74□□□□□ -0.85
LINC00540-203ENST00000631321 WFDC3Q8IUB2 231 aa9.74□□□□□ -0.85
LINC00540-203ENST00000631321 C20orf173Q96LM9 149 aa9.74□□□□□ -0.85
LINC00540-203ENST00000631321 C18orf15Q96N68 181 aa9.74□□□□□ -0.85
LINC00540-203ENST00000631321 COL6A6A6NMZ7 2263 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 TRAV8-6A0A0B4J262 113 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 ARL3P36405 182 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 RBX1P62877 108 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 TMEM158Q8WZ71 300 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 SMPXQ9UHP9 88 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 HHLA3Q9XRX5 114 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 CACNA1BQ00975 2339 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 A6NDN8 102 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 H3BRM9 83 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 NDUFA4O00483 81 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 ATP5LO75964 103 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 PRR9Q5T870 116 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 GPHB5Q86YW7 130 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 PCP2Q8IVA1 136 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 LINC00477Q96M19 166 aa9.73□□□□□ -0.85
LINC00540-203ENST00000631321 H3BUA1 57 aa9.72□□□□□ -0.85
LINC00540-203ENST00000631321 SOCS3O14543 225 aa9.72□□□□□ -0.85
LINC00540-203ENST00000631321 PRORYQ9H606 182 aa9.72□□□□□ -0.85
LINC00540-203ENST00000631321 SVEP1Q4LDE5 3571 aa9.72□□□□□ -0.85
LINC00540-203ENST00000631321 KIR3DS1Q14943 382 aa9.72□□□□□ -0.85
LINC00540-203ENST00000631321 Q6ZQT7 251 aa9.72□□□□□ -0.85
LINC00540-203ENST00000631321 ASH1LQ9NR48 2969 aaKnown RBP9.72□□□□□ -0.85
LINC00540-203ENST00000631321 LINC00527Q9UJ94 153 aa9.72□□□□□ -0.85
LINC00540-203ENST00000631321 IGHV3OR16-10A0A075B7F0 116 aa9.71□□□□□ -0.85
LINC00540-203ENST00000631321 NMUP48645 174 aa9.71□□□□□ -0.85
LINC00540-203ENST00000631321 UNQ9165/PRO28630Q6UXU0 137 aa9.71□□□□□ -0.85
LINC00540-203ENST00000631321 ZFAND2AQ8N6M9 145 aa9.71□□□□□ -0.85
LINC00540-203ENST00000631321 MRAP2Q96G30 205 aa9.71□□□□□ -0.85
LINC00540-203ENST00000631321 USMG5Q96IX5 58 aa9.71□□□□□ -0.85
LINC00540-203ENST00000631321 C9orf118A6NHY6 69 aa9.71□□□□□ -0.86
LINC00540-203ENST00000631321 OVOL1O14753 267 aa9.71□□□□□ -0.86
LINC00540-203ENST00000631321 IGKCP01834 107 aa9.71□□□□□ -0.86
LINC00540-203ENST00000631321 PRSS1P07477 247 aa9.71□□□□□ -0.86
LINC00540-203ENST00000631321 SMIM17P0DL12 118 aa9.71□□□□□ -0.86
LINC00540-203ENST00000631321 UQCRFS1P47985 274 aa9.71□□□□□ -0.86
LINC00540-203ENST00000631321 LAGE3Q14657 143 aa9.71□□□□□ -0.86
LINC00540-203ENST00000631321 SPANXN1Q5VSR9 72 aa9.71□□□□□ -0.86
LINC00540-203ENST00000631321 HIGD1BQ9P298 99 aa9.71□□□□□ -0.86
LINC00540-203ENST00000631321 TRBV12-3P01733 135 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 IGHG2P01859 326 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 HLA-DRB4P13762 266 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 UFC1Q9Y3C8 167 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 HLA-DRB4X5D2U9 266 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 IGHV4-61A0A0C4DH41 118 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 H3BVH4 76 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 DPM2O94777 84 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 CDKN1BP46527 198 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 TCTAP57738 103 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 BRD3OSQ6XYD6 125 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 FAM19A4Q96LR4 140 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 FOXC2Q99958 501 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 PIMREGQ9BSJ6 248 aa9.7□□□□□ -0.86
LINC00540-203ENST00000631321 IGKV2D-26A0A0A0MRZ7 120 aa9.69□□□□□ -0.86
LINC00540-203ENST00000631321 TRAV26-2A0A0B4J265 109 aa9.69□□□□□ -0.86
LINC00540-203ENST00000631321 TRAV21A0A0B4J279 112 aa9.69□□□□□ -0.86
LINC00540-203ENST00000631321 TRAV40A0A0B4J280 105 aa9.69□□□□□ -0.86
LINC00540-203ENST00000631321 A6NDX4 124 aa9.69□□□□□ -0.86
LINC00540-203ENST00000631321 GNLYP22749 145 aa9.69□□□□□ -0.86
LINC00540-203ENST00000631321 APRG1Q8IVJ8 170 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms