RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ZFP36L1Q07352 338 aaKnown RBP7.13□□□□□ -1.27
VCL-206ENST00000623461 ATOX1O00244 68 aa7.13□□□□□ -1.27
VCL-206ENST00000623461 Q6ZSR3 168 aa7.13□□□□□ -1.27
VCL-206ENST00000623461 RBMY1FQ15415 496 aaKnown RBP7.13□□□□□ -1.27
VCL-206ENST00000623461 RNF114Q9Y508 228 aa7.13□□□□□ -1.27
VCL-206ENST00000623461 M0R1W7 72 aa7.13□□□□□ -1.27
VCL-206ENST00000623461 RNASE6Q93091 150 aaKnown RBP7.13□□□□□ -1.27
VCL-206ENST00000623461 TRAV13-2A0A0B4J235 113 aa7.13□□□□□ -1.27
VCL-206ENST00000623461 PRB4P10163 310 aaPredicted RBP7.13□□□□□ -1.27
VCL-206ENST00000623461 YPEL4Q96NS1 127 aa7.13□□□□□ -1.27
VCL-206ENST00000623461 C15orf65H3BRN8 121 aa7.12□□□□□ -1.27
VCL-206ENST00000623461 RSPO1Q2MKA7 263 aaPredicted RBP7.12□□□□□ -1.27
VCL-206ENST00000623461 NDUFA12Q9UI09 145 aa7.12□□□□□ -1.27
VCL-206ENST00000623461 SYNJ2BPP57105 145 aa7.12□□□□□ -1.27
VCL-206ENST00000623461 FAM120AOSQ5T036 256 aa7.12□□□□□ -1.27
VCL-206ENST00000623461 USMG5Q96IX5 58 aa7.12□□□□□ -1.27
VCL-206ENST00000623461 SHANK1Q9Y566 2161 aa7.12□□□□□ -1.27
VCL-206ENST00000623461 IGFL4Q6B9Z1 124 aa7.12□□□□□ -1.27
VCL-206ENST00000623461 ZNF493Q6ZR52 646 aa7.12□□□□□ -1.27
VCL-206ENST00000623461 PKDREJQ9NTG1 2253 aa7.12□□□□□ -1.27
VCL-206ENST00000623461 PSCAO43653 123 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 LINC01560Q8TB33 94 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 ZNF625Q96I27 306 aaPredicted RBP7.11□□□□□ -1.27
VCL-206ENST00000623461 C11orf1Q9H5F2 150 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 PRDM6Q9NQX0 595 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 IGHV1-69DA0A0B4J2H0 117 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 TRGV4A0A0C4DH28 118 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 ATP5G1P05496 136 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 LINC00173Q6ZV60 143 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 LINC00311Q8N616 119 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 NDUFC2O95298 119 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 FXYD2P54710 66 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 LTBP2Q14767 1821 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 A0A087WWL8 130 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 CHCHD5Q9BSY4 110 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 MED12Q93074 2177 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 IGHV3OR16-10A0A075B7F0 116 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 EFNA4P52798 201 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 C17orf58Q2M2W7 97 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 A0A0B4J2C4 111 aa7.11□□□□□ -1.27
VCL-206ENST00000623461 TNCP24821 2201 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 C6orf226Q5I0X4 101 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 SPATA12Q7Z6I5 190 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 C3orf56Q8N813 242 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 TRAV13-1A0A0B4J241 112 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 SDHAF1A6NFY7 115 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 PRSS47A8MTI9 375 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 RHODO00212 210 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 MRAPQ8TCY5 172 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 RPL32P62910 135 aaKnown RBP7.1□□□□□ -1.27
VCL-206ENST00000623461 C3orf36Q3SXR2 165 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 TRAV12-1A0A0B4J245 112 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 TRAV26-2A0A0B4J265 109 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 EPOPA6NHQ4 379 aa7.1□□□□□ -1.27
VCL-206ENST00000623461 VMO1Q7Z5L0 202 aa7.09□□□□□ -1.27
VCL-206ENST00000623461 Q8TCH9 128 aa7.09□□□□□ -1.27
VCL-206ENST00000623461 RBAKDNA6NC62 111 aa7.09□□□□□ -1.27
VCL-206ENST00000623461 PRB3Q04118 309 aaPredicted RBP7.09□□□□□ -1.27
VCL-206ENST00000623461 ANXA2RQ3ZCQ2 193 aa7.09□□□□□ -1.27
VCL-206ENST00000623461 GATA4P43694 442 aa7.09□□□□□ -1.27
VCL-206ENST00000623461 WT1-ASQ06250 92 aa7.09□□□□□ -1.27
VCL-206ENST00000623461 RHOHQ15669 191 aa7.09□□□□□ -1.27
VCL-206ENST00000623461 C7orf69Q9H7B7 122 aa7.09□□□□□ -1.27
VCL-206ENST00000623461 WDR86Q86TI4 376 aa7.09□□□□□ -1.27
VCL-206ENST00000623461 ZNF524Q96C55 264 aa7.09□□□□□ -1.27
VCL-206ENST00000623461 C2orf70A6NJV1 201 aa7.09□□□□□ -1.28
VCL-206ENST00000623461 FAM110DQ8TAY7 271 aaPredicted RBP7.09□□□□□ -1.28
VCL-206ENST00000623461 THBDP07204 575 aa7.08□□□□□ -1.28
VCL-206ENST00000623461 IGHV3-73A0A0B4J1V6 119 aa7.08□□□□□ -1.28
VCL-206ENST00000623461 C1orf159Q96HA4 380 aa7.08□□□□□ -1.28
VCL-206ENST00000623461 NUP210LQ5VU65 1888 aa7.08□□□□□ -1.28
VCL-206ENST00000623461 BAALC-AS2P0C853 105 aa7.08□□□□□ -1.28
VCL-206ENST00000623461 NDPQ00604 133 aa7.08□□□□□ -1.28
VCL-206ENST00000623461 LINC01620Q4KN68 170 aa7.08□□□□□ -1.28
VCL-206ENST00000623461 DEFB104AQ8WTQ1 72 aa7.08□□□□□ -1.28
VCL-206ENST00000623461 CITED2Q99967 270 aaPredicted RBP7.08□□□□□ -1.28
VCL-206ENST00000623461 CACNA1HO95180 2353 aa7.08□□□□□ -1.28
VCL-206ENST00000623461 CR1LQ2VPA4 569 aa7.08□□□□□ -1.28
VCL-206ENST00000623461 MRPL53Q96EL3 112 aaKnown RBP7.08□□□□□ -1.28
VCL-206ENST00000623461 C1orf43Q9BWL3 253 aa7.08□□□□□ -1.28
VCL-206ENST00000623461 RBM3P98179 157 aaKnown RBP7.08□□□□□ -1.28
VCL-206ENST00000623461 PIFOQ8TCI5 191 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 ROS1P08922 2347 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 FAM236AA0A1B0GUQ0 79 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 FAM236BA0A1B0GV22 79 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 HOXD3P31249 432 aaPredicted RBP7.07□□□□□ -1.28
VCL-206ENST00000623461 CTRLP40313 264 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 TRBV10-2A0A0K0K1G8 114 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 Q0VFX4 171 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 Q6ZUT4 128 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 Q71RC1 249 aaPredicted RBP7.07□□□□□ -1.28
VCL-206ENST00000623461 MDS2Q8NDY4 140 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 PLCE1Q9P212 2302 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 TRBV6-1A0A0K0K1D8 114 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 H3BT86 120 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 HERVK_113P63121 156 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 MRPL23Q16540 153 aaKnown RBP7.07□□□□□ -1.28
VCL-206ENST00000623461 ASPHD1Q5U4P2 390 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 RNF183Q96D59 192 aa7.07□□□□□ -1.28
VCL-206ENST00000623461 EGR2P11161 476 aaPredicted RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 808.5 ms