RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 COX11Q9Y6N1 276 aa10.09□□□□□ -0.79
MSH6-215ENST00000622629 FCN3O75636 299 aa10.09□□□□□ -0.79
MSH6-215ENST00000622629 UBE2V1Q13404 147 aa10.09□□□□□ -0.79
MSH6-215ENST00000622629 LYRM7Q5U5X0 104 aa10.09□□□□□ -0.79
MSH6-215ENST00000622629 EGR2P11161 476 aaPredicted RBP10.09□□□□□ -0.79
MSH6-215ENST00000622629 LAGE3Q14657 143 aa10.09□□□□□ -0.79
MSH6-215ENST00000622629 PSMG4Q5JS54 123 aa10.09□□□□□ -0.79
MSH6-215ENST00000622629 TMEM190Q8WZ59 177 aa10.09□□□□□ -0.79
MSH6-215ENST00000622629 TMEM238C9JI98 176 aa10.09□□□□□ -0.79
MSH6-215ENST00000622629 OVOL1O14753 267 aa10.09□□□□□ -0.79
MSH6-215ENST00000622629 CRYGCP07315 174 aa10.09□□□□□ -0.79
MSH6-215ENST00000622629 LCNL1Q6ZST4 164 aa10.09□□□□□ -0.79
MSH6-215ENST00000622629 RHPN1-AS1Q9BWJ2 59 aa10.09□□□□□ -0.79
MSH6-215ENST00000622629 APOMO95445 188 aa10.08□□□□□ -0.8
MSH6-215ENST00000622629 SEC11AP67812 179 aa10.08□□□□□ -0.8
MSH6-215ENST00000622629 OR2K2Q8NGT1 345 aa10.08□□□□□ -0.8
MSH6-215ENST00000622629 HSD52Q0P140 79 aa10.08□□□□□ -0.8
MSH6-215ENST00000622629 KLF5Q13887 457 aaPredicted RBP10.08□□□□□ -0.8
MSH6-215ENST00000622629 MTURNQ8N3F0 131 aa10.08□□□□□ -0.8
MSH6-215ENST00000622629 KLF12Q9Y4X4 402 aa10.08□□□□□ -0.8
MSH6-215ENST00000622629 PPP1R17O96001 155 aa10.08□□□□□ -0.8
MSH6-215ENST00000622629 C8orf86Q6ZUL3 223 aa10.08□□□□□ -0.8
MSH6-215ENST00000622629 BCL6BQ8N143 479 aaPredicted RBP10.08□□□□□ -0.8
MSH6-215ENST00000622629 ABCA2Q9BZC7 2435 aa10.07□□□□□ -0.8
MSH6-215ENST00000622629 TMEM8BA6NDV4 472 aa10.07□□□□□ -0.8
MSH6-215ENST00000622629 PAX1P15863 534 aa10.07□□□□□ -0.8
MSH6-215ENST00000622629 LGALS3P17931 250 aaKnown RBP10.07□□□□□ -0.8
MSH6-215ENST00000622629 DYNAPQ8N1N2 210 aa10.07□□□□□ -0.8
MSH6-215ENST00000622629 TP53TG3Q9ULZ0 132 aa10.07□□□□□ -0.8
MSH6-215ENST00000622629 IGHV7-81A0A0B4J1V7 117 aa10.07□□□□□ -0.8
MSH6-215ENST00000622629 TRAV26-2A0A0B4J265 109 aa10.07□□□□□ -0.8
MSH6-215ENST00000622629 C1orf122Q6ZSJ8 110 aa10.07□□□□□ -0.8
MSH6-215ENST00000622629 CLUHP3Q96NS8 147 aa10.07□□□□□ -0.8
MSH6-215ENST00000622629 IGLV11-55A0A075B6I3 123 aa10.06□□□□□ -0.8
MSH6-215ENST00000622629 TRAV12-3A0A0B4J271 114 aa10.06□□□□□ -0.8
MSH6-215ENST00000622629 ORMDL2Q53FV1 153 aa10.06□□□□□ -0.8
MSH6-215ENST00000622629 GDF5OSQ5U4N7 250 aa10.06□□□□□ -0.8
MSH6-215ENST00000622629 MAPK1IP1LQ8NDC0 245 aa10.06□□□□□ -0.8
MSH6-215ENST00000622629 OR9G4Q8NGQ1 327 aa10.06□□□□□ -0.8
MSH6-215ENST00000622629 CTSGP08311 255 aa10.06□□□□□ -0.8
MSH6-215ENST00000622629 CD300EQ496F6 205 aaPredicted RBP10.06□□□□□ -0.8
MSH6-215ENST00000622629 MSRB1Q9NZV6 116 aa10.06□□□□□ -0.8
MSH6-215ENST00000622629 SPRY2O43597 315 aa10.06□□□□□ -0.8
MSH6-215ENST00000622629 MRPL16Q9NX20 251 aaKnown RBP10.06□□□□□ -0.8
MSH6-215ENST00000622629 HOXB4P17483 251 aaPredicted RBP10.06□□□□□ -0.8
MSH6-215ENST00000622629 ADORA2A-AS1P86434 159 aa10.06□□□□□ -0.8
MSH6-215ENST00000622629 LINC00477Q96M19 166 aa10.06□□□□□ -0.8
MSH6-215ENST00000622629 NPIPB6E9PJ23 425 aa10.05□□□□□ -0.8
MSH6-215ENST00000622629 ESDP10768 282 aa10.05□□□□□ -0.8
MSH6-215ENST00000622629 ZNF747Q9BV97 191 aa10.05□□□□□ -0.8
MSH6-215ENST00000622629 CYSLTR1Q9Y271 337 aa10.05□□□□□ -0.8
MSH6-215ENST00000622629 SPEGQ15772 3267 aa10.05□□□□□ -0.8
MSH6-215ENST00000622629 C11orf44Q8N8P7 122 aa10.05□□□□□ -0.8
MSH6-215ENST00000622629 AGPAT4-IT1Q9H0P7 198 aa10.05□□□□□ -0.8
MSH6-215ENST00000622629 IGHV1-69DA0A0B4J2H0 117 aa10.04□□□□□ -0.8
MSH6-215ENST00000622629 IGHV1-69P01742 117 aa10.04□□□□□ -0.8
MSH6-215ENST00000622629 CELSR3Q9NYQ7 3312 aa10.04□□□□□ -0.8
MSH6-215ENST00000622629 SMAD7O15105 426 aaKnown RBP10.04□□□□□ -0.8
MSH6-215ENST00000622629 GATA1P15976 413 aaPredicted RBP10.04□□□□□ -0.8
MSH6-215ENST00000622629 ZFP36P26651 326 aaKnown RBP10.04□□□□□ -0.8
MSH6-215ENST00000622629 EMP1P54849 157 aa10.04□□□□□ -0.8
MSH6-215ENST00000622629 KIR3DS1Q14943 382 aa10.04□□□□□ -0.8
MSH6-215ENST00000622629 ITLN2Q8WWU7 325 aaPredicted RBP10.04□□□□□ -0.8
MSH6-215ENST00000622629 FASNP49327 2511 aaKnown RBP10.04□□□□□ -0.8
MSH6-215ENST00000622629 A0A087WWL8 130 aa10.04□□□□□ -0.8
MSH6-215ENST00000622629 B4DSR2 109 aa10.04□□□□□ -0.8
MSH6-215ENST00000622629 ODF1Q14990 250 aa10.04□□□□□ -0.8
MSH6-215ENST00000622629 DTX2Q86UW9 622 aa10.04□□□□□ -0.8
MSH6-215ENST00000622629 RAX2Q96IS3 184 aa10.04□□□□□ -0.8
MSH6-215ENST00000622629 FANCD2OSQ96PS1 177 aa10.04□□□□□ -0.8
MSH6-215ENST00000622629 DPH3P1Q9H4G8 78 aa10.04□□□□□ -0.8
MSH6-215ENST00000622629 CD5LO43866 347 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 NPBQ8NG41 125 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 DUX3Q96PT4 197 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 SPXQ9BT56 116 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 MEGF9Q9H1U4 602 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 SMAGPQ0VAQ4 97 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 PKD1L2Q7Z442 2459 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 FAM223BA6NKX1 122 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 FAM223AQ8IWN6 122 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 Q8N9W7 124 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 USMG5Q96IX5 58 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 DSCAML1Q8TD84 2053 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 ADAMTS20P59510 1910 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 C19orf71A6NCJ1 209 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 ZNF815PA8K554 130 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 BEX4Q9NWD9 120 aaPredicted RBP10.03□□□□□ -0.8
MSH6-215ENST00000622629 TNFRSF18Q9Y5U5 241 aa10.03□□□□□ -0.8
MSH6-215ENST00000622629 FOXE3Q13461 319 aa10.02□□□□□ -0.8
MSH6-215ENST00000622629 PRSS22Q9GZN4 317 aa10.02□□□□□ -0.8
MSH6-215ENST00000622629 DKK2Q9UBU2 259 aa10.02□□□□□ -0.8
MSH6-215ENST00000622629 SMPXQ9UHP9 88 aa10.02□□□□□ -0.8
MSH6-215ENST00000622629 PSMB11A5LHX3 300 aa10.02□□□□□ -0.81
MSH6-215ENST00000622629 PRAC2D3DTV9 90 aa10.02□□□□□ -0.81
MSH6-215ENST00000622629 F6UB75 175 aa10.02□□□□□ -0.81
MSH6-215ENST00000622629 SAMD5Q5TGI4 173 aa10.02□□□□□ -0.81
MSH6-215ENST00000622629 SP5Q6BEB4 398 aaPredicted RBP10.02□□□□□ -0.81
MSH6-215ENST00000622629 CSTL1Q9H114 145 aa10.02□□□□□ -0.81
MSH6-215ENST00000622629 DAZ1Q9NQZ3 744 aaKnown RBP10.02□□□□□ -0.81
MSH6-215ENST00000622629 A0A1W2PRX2 142 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms