RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 ZNF469Q96JG9 3925 aaPredicted RBP9.53□□□□□ -0.88
CIITA-212ENST00000618207 A6NDX4 124 aa9.53□□□□□ -0.88
CIITA-212ENST00000618207 Q6ZQT7 251 aa9.53□□□□□ -0.88
CIITA-212ENST00000618207 GFRA4Q9GZZ7 299 aa9.53□□□□□ -0.88
CIITA-212ENST00000618207 SMAD7O15105 426 aaKnown RBP9.53□□□□□ -0.88
CIITA-212ENST00000618207 RIPPLY3P57055 190 aa9.53□□□□□ -0.88
CIITA-212ENST00000618207 FAM162BQ5T6X4 162 aa9.53□□□□□ -0.88
CIITA-212ENST00000618207 BORCS7Q96B45 105 aa9.53□□□□□ -0.88
CIITA-212ENST00000618207 H0Y8G0 127 aa9.52□□□□□ -0.88
CIITA-212ENST00000618207 IGHG2P01859 326 aa9.52□□□□□ -0.88
CIITA-212ENST00000618207 C3orf79P0CE67 100 aa9.52□□□□□ -0.88
CIITA-212ENST00000618207 HIST2H2BCQ6DN03 193 aa9.52□□□□□ -0.88
CIITA-212ENST00000618207 C8orf86Q6ZUL3 223 aa9.52□□□□□ -0.88
CIITA-212ENST00000618207 CUBNO60494 3623 aa9.52□□□□□ -0.88
CIITA-212ENST00000618207 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.52□□□□□ -0.89
CIITA-212ENST00000618207 EDN2P20800 178 aa9.52□□□□□ -0.89
CIITA-212ENST00000618207 OR4X2Q8NGF9 303 aa9.52□□□□□ -0.89
CIITA-212ENST00000618207 URB1-AS1Q96HZ7 61 aa9.52□□□□□ -0.89
CIITA-212ENST00000618207 C16orf92Q96LL3 132 aa9.52□□□□□ -0.89
CIITA-212ENST00000618207 COX11Q9Y6N1 276 aa9.52□□□□□ -0.89
CIITA-212ENST00000618207 WNK1Q9H4A3 2382 aa9.52□□□□□ -0.89
CIITA-212ENST00000618207 LOC102724200A0A096LPH7 203 aaPredicted RBP9.51□□□□□ -0.89
CIITA-212ENST00000618207 RIGQ13278 110 aa9.51□□□□□ -0.89
CIITA-212ENST00000618207 SAMD13Q5VXD3 122 aa9.51□□□□□ -0.89
CIITA-212ENST00000618207 STPG4Q8N801 248 aa9.51□□□□□ -0.89
CIITA-212ENST00000618207 LINC01356Q8N9X3 169 aa9.51□□□□□ -0.89
CIITA-212ENST00000618207 TRBV6-1A0A0K0K1D8 114 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 LOC389332A0A1B0GUA5 103 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 FAM223BA6NKX1 122 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 HAX1O00165 279 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 C19orf54Q5BKX5 351 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 FAM223AQ8IWN6 122 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 AMN1Q8IY45 258 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 MCRIP2Q9BUT9 160 aaKnown RBP9.5□□□□□ -0.89
CIITA-212ENST00000618207 AGPAT4-IT1Q9H0P7 198 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 TRAV8-2A0A0B4J237 113 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 IGF1P05019 195 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 CRYBA4P53673 196 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 TM4SF20Q53R12 229 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 LINC00173Q6ZV60 143 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 NDFIP1Q9BT67 221 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 VAMP8Q9BV40 100 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 MSRB1Q9NZV6 116 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 ITPR3Q14573 2671 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 FAM231BA6NCW3 169 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 SCGB1A1P11684 91 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 TWIST1Q15672 202 aa9.5□□□□□ -0.89
CIITA-212ENST00000618207 NF1P21359 2839 aa9.49□□□□□ -0.89
CIITA-212ENST00000618207 FLNAP21333 2647 aaKnown RBP9.49□□□□□ -0.89
CIITA-212ENST00000618207 CR1P17927 2039 aa9.49□□□□□ -0.89
CIITA-212ENST00000618207 SMKR1H3BMG3 65 aa9.49□□□□□ -0.89
CIITA-212ENST00000618207 SLC25A16P16260 332 aa9.49□□□□□ -0.89
CIITA-212ENST00000618207 RAB9AP51151 201 aa9.49□□□□□ -0.89
CIITA-212ENST00000618207 FXYD7P58549 80 aa9.49□□□□□ -0.89
CIITA-212ENST00000618207 EBLN2Q6P2I7 272 aa9.49□□□□□ -0.89
CIITA-212ENST00000618207 GLMPQ8WWB7 406 aa9.49□□□□□ -0.89
CIITA-212ENST00000618207 MTORP42345 2549 aa9.49□□□□□ -0.89
CIITA-212ENST00000618207 AGRNO00468 2067 aa9.49□□□□□ -0.89
CIITA-212ENST00000618207 WFDC3Q8IUB2 231 aa9.49□□□□□ -0.89
CIITA-212ENST00000618207 TENM4Q6N022 2769 aa9.48□□□□□ -0.89
CIITA-212ENST00000618207 F6UB75 175 aa9.48□□□□□ -0.89
CIITA-212ENST00000618207 SPRY2O43597 315 aa9.48□□□□□ -0.89
CIITA-212ENST00000618207 KLF5Q13887 457 aaPredicted RBP9.48□□□□□ -0.89
CIITA-212ENST00000618207 TMEM78Q5T7P6 136 aa9.48□□□□□ -0.89
CIITA-212ENST00000618207 SLC50A1Q9BRV3 221 aa9.48□□□□□ -0.89
CIITA-212ENST00000618207 BEX4Q9NWD9 120 aaPredicted RBP9.48□□□□□ -0.89
CIITA-212ENST00000618207 FAM181BA6NEQ2 426 aa9.48□□□□□ -0.89
CIITA-212ENST00000618207 DSCR9P59020 149 aa9.48□□□□□ -0.89
CIITA-212ENST00000618207 HIST2H2BDQ6DRA6 164 aa9.48□□□□□ -0.89
CIITA-212ENST00000618207 Q8N976 141 aa9.48□□□□□ -0.89
CIITA-212ENST00000618207 FER1L6-AS1Q8NA97 138 aa9.48□□□□□ -0.89
CIITA-212ENST00000618207 C20orf173Q96LM9 149 aa9.48□□□□□ -0.89
CIITA-212ENST00000618207 ATP6V0BQ99437 205 aa9.48□□□□□ -0.89
CIITA-212ENST00000618207 TRAV26-1A0A087WT03 109 aa9.47□□□□□ -0.89
CIITA-212ENST00000618207 FABP5P3A8MUU1 101 aa9.47□□□□□ -0.89
CIITA-212ENST00000618207 NCR2O95944 276 aa9.47□□□□□ -0.89
CIITA-212ENST00000618207 FOXE3Q13461 319 aa9.47□□□□□ -0.89
CIITA-212ENST00000618207 NPFFR1Q9GZQ6 430 aa9.47□□□□□ -0.89
CIITA-212ENST00000618207 D6R8Y8 96 aa9.47□□□□□ -0.89
CIITA-212ENST00000618207 TEX43Q6ZNM6 134 aa9.47□□□□□ -0.89
CIITA-212ENST00000618207 PGPEP1Q9NXJ5 209 aa9.47□□□□□ -0.89
CIITA-212ENST00000618207 HELZ2Q9BYK8 2649 aaKnown RBP9.47□□□□□ -0.89
CIITA-212ENST00000618207 A0A087X0K7 114 aa9.46□□□□□ -0.89
CIITA-212ENST00000618207 A0A096LNT2 108 aa9.46□□□□□ -0.89
CIITA-212ENST00000618207 IGHV1-24A0A0C4DH33 117 aa9.46□□□□□ -0.89
CIITA-212ENST00000618207 KLK9Q2XQG4 91 aa9.46□□□□□ -0.89
CIITA-212ENST00000618207 C11orf21Q9P2W6 132 aa9.46□□□□□ -0.89
CIITA-212ENST00000618207 KLK9Q9UKQ9 250 aa9.46□□□□□ -0.89
CIITA-212ENST00000618207 FAM106AQ4KMX7 169 aa9.46□□□□□ -0.9
CIITA-212ENST00000618207 PRSS3P2Q8NHM4 247 aa9.46□□□□□ -0.9
CIITA-212ENST00000618207 RHPN1-AS1Q9BWJ2 59 aa9.46□□□□□ -0.9
CIITA-212ENST00000618207 U3KQE9 123 aa9.46□□□□□ -0.9
CIITA-212ENST00000618207 NOTCH3Q9UM47 2321 aa9.46□□□□□ -0.9
CIITA-212ENST00000618207 CRIP2P52943 208 aaPredicted RBP9.46□□□□□ -0.9
CIITA-212ENST00000618207 SPATA12Q7Z6I5 190 aa9.46□□□□□ -0.9
CIITA-212ENST00000618207 Q96MF0 132 aa9.46□□□□□ -0.9
CIITA-212ENST00000618207 PMCHL2Q9BQD1 86 aa9.46□□□□□ -0.9
CIITA-212ENST00000618207 ITPR2Q14571 2701 aa9.45□□□□□ -0.9
CIITA-212ENST00000618207 NDUFA4O00483 81 aa9.45□□□□□ -0.9
CIITA-212ENST00000618207 SPATA45Q537H7 98 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms