RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 UNC79Q9P2D8 2635 aa13.14□□□□□ -0.31
PCDHGC3-205ENST00000617641 IGHV4OR15-8A0A075B7B6 117 aa13.14□□□□□ -0.31
PCDHGC3-205ENST00000617641 A0A087WW49 117 aa13.14□□□□□ -0.31
PCDHGC3-205ENST00000617641 FABP5P3A8MUU1 101 aa13.14□□□□□ -0.31
PCDHGC3-205ENST00000617641 RIGQ13278 110 aa13.14□□□□□ -0.31
PCDHGC3-205ENST00000617641 RNF152Q8N8N0 203 aa13.14□□□□□ -0.31
PCDHGC3-205ENST00000617641 UBE2E2Q96LR5 201 aa13.14□□□□□ -0.31
PCDHGC3-205ENST00000617641 TMEM213A2RRL7 107 aa13.13□□□□□ -0.31
PCDHGC3-205ENST00000617641 ORM1P02763 201 aa13.13□□□□□ -0.31
PCDHGC3-205ENST00000617641 G0S2P27469 103 aa13.13□□□□□ -0.31
PCDHGC3-205ENST00000617641 JOSD1Q15040 202 aaPredicted RBP13.13□□□□□ -0.31
PCDHGC3-205ENST00000617641 ZNF575Q86XF7 245 aa13.13□□□□□ -0.31
PCDHGC3-205ENST00000617641 GCN1Q92616 2671 aaKnown RBP13.13□□□□□ -0.31
PCDHGC3-205ENST00000617641 SYNJ2BPP57105 145 aa13.13□□□□□ -0.31
PCDHGC3-205ENST00000617641 TMEM86BQ8N661 226 aa13.13□□□□□ -0.31
PCDHGC3-205ENST00000617641 MUC21A0A0G2JKD1 596 aa13.12□□□□□ -0.31
PCDHGC3-205ENST00000617641 MUC21A0A140T8X8 626 aa13.12□□□□□ -0.31
PCDHGC3-205ENST00000617641 DNAJC9-AS1A6NH13 148 aa13.12□□□□□ -0.31
PCDHGC3-205ENST00000617641 MUC21Q5SSG8 566 aa13.12□□□□□ -0.31
PCDHGC3-205ENST00000617641 YAE1D1Q9NRH1 226 aa13.12□□□□□ -0.31
PCDHGC3-205ENST00000617641 RPS20P60866 119 aaKnown RBP13.12□□□□□ -0.31
PCDHGC3-205ENST00000617641 C18orf65Q6ZTR6 163 aa13.12□□□□□ -0.31
PCDHGC3-205ENST00000617641 KLHDC1Q8N7A1 406 aa13.12□□□□□ -0.31
PCDHGC3-205ENST00000617641 BORCS7Q96B45 105 aa13.12□□□□□ -0.31
PCDHGC3-205ENST00000617641 KCNS1Q96KK3 526 aa13.12□□□□□ -0.31
PCDHGC3-205ENST00000617641 SAMD10Q9BYL1 202 aa13.12□□□□□ -0.31
PCDHGC3-205ENST00000617641 LOC102724200A0A096LPH7 203 aaPredicted RBP13.11□□□□□ -0.31
PCDHGC3-205ENST00000617641 CD5LO43866 347 aa13.11□□□□□ -0.31
PCDHGC3-205ENST00000617641 PAFAH1B2P68402 229 aa13.11□□□□□ -0.31
PCDHGC3-205ENST00000617641 KLF5Q13887 457 aaPredicted RBP13.11□□□□□ -0.31
PCDHGC3-205ENST00000617641 HOXD3P31249 432 aaPredicted RBP13.11□□□□□ -0.31
PCDHGC3-205ENST00000617641 SRSF2Q01130 221 aaKnown RBP13.11□□□□□ -0.31
PCDHGC3-205ENST00000617641 C11orf21Q9P2W6 132 aa13.11□□□□□ -0.31
PCDHGC3-205ENST00000617641 F6UB75 175 aa13.1□□□□□ -0.31
PCDHGC3-205ENST00000617641 OVOL1O14753 267 aa13.1□□□□□ -0.31
PCDHGC3-205ENST00000617641 LINC01559Q495D7 138 aa13.1□□□□□ -0.31
PCDHGC3-205ENST00000617641 WFDC3Q8IUB2 231 aa13.1□□□□□ -0.31
PCDHGC3-205ENST00000617641 FER1L6-AS1Q8NA97 138 aa13.1□□□□□ -0.31
PCDHGC3-205ENST00000617641 OR10J6PQ8NGY7 276 aa13.1□□□□□ -0.31
PCDHGC3-205ENST00000617641 IGLC6P0CF74 106 aa13.1□□□□□ -0.31
PCDHGC3-205ENST00000617641 DEFB136Q30KP8 78 aa13.1□□□□□ -0.31
PCDHGC3-205ENST00000617641 Q6ZQT7 251 aa13.1□□□□□ -0.31
PCDHGC3-205ENST00000617641 ESM1Q9NQ30 184 aa13.1□□□□□ -0.31
PCDHGC3-205ENST00000617641 A0A1B0GW15 77 aa13.09□□□□□ -0.31
PCDHGC3-205ENST00000617641 CD33P20138 364 aa13.09□□□□□ -0.31
PCDHGC3-205ENST00000617641 PMCHP20382 165 aa13.09□□□□□ -0.31
PCDHGC3-205ENST00000617641 CTRLP40313 264 aa13.09□□□□□ -0.31
PCDHGC3-205ENST00000617641 HIST1H1AQ02539 215 aaPredicted RBP13.09□□□□□ -0.31
PCDHGC3-205ENST00000617641 MAJINQ3KP22 176 aa13.09□□□□□ -0.31
PCDHGC3-205ENST00000617641 PRR9Q5T870 116 aa13.09□□□□□ -0.31
PCDHGC3-205ENST00000617641 Q6ZSV7 163 aa13.09□□□□□ -0.31
PCDHGC3-205ENST00000617641 Q6ZWC4 215 aa13.09□□□□□ -0.31
PCDHGC3-205ENST00000617641 GATD1Q8NB37 220 aa13.09□□□□□ -0.31
PCDHGC3-205ENST00000617641 IGKV3D-20A0A0C4DH25 116 aa13.08□□□□□ -0.31
PCDHGC3-205ENST00000617641 GPX1P07203 203 aa13.08□□□□□ -0.31
PCDHGC3-205ENST00000617641 DCANP1Q8TF63 244 aa13.08□□□□□ -0.31
PCDHGC3-205ENST00000617641 LINC00477Q96M19 166 aa13.08□□□□□ -0.31
PCDHGC3-205ENST00000617641 ACANP16112 2415 aa13.08□□□□□ -0.31
PCDHGC3-205ENST00000617641 J3KRW8 73 aa13.08□□□□□ -0.32
PCDHGC3-205ENST00000617641 TCTEX1D4Q5JR98 221 aa13.08□□□□□ -0.32
PCDHGC3-205ENST00000617641 LGALS9O00182 355 aa13.07□□□□□ -0.32
PCDHGC3-205ENST00000617641 AMTP48728 403 aa13.07□□□□□ -0.32
PCDHGC3-205ENST00000617641 DNLZQ5SXM8 178 aa13.07□□□□□ -0.32
PCDHGC3-205ENST00000617641 HIST2H2BDQ6DRA6 164 aa13.07□□□□□ -0.32
PCDHGC3-205ENST00000617641 OR8A1Q8NGG7 326 aa13.07□□□□□ -0.32
PCDHGC3-205ENST00000617641 LENEPQ9Y5L5 61 aa13.07□□□□□ -0.32
PCDHGC3-205ENST00000617641 ANK3Q12955 4377 aaKnown RBP13.07□□□□□ -0.32
PCDHGC3-205ENST00000617641 MYO9AB2RTY4 2548 aa13.07□□□□□ -0.32
PCDHGC3-205ENST00000617641 ZNF324O75467 553 aaPredicted RBP13.07□□□□□ -0.32
PCDHGC3-205ENST00000617641 TFPI2P48307 235 aa13.07□□□□□ -0.32
PCDHGC3-205ENST00000617641 FAM19A2Q8N3H0 131 aa13.07□□□□□ -0.32
PCDHGC3-205ENST00000617641 MS4A6AQ9H2W1 248 aa13.07□□□□□ -0.32
PCDHGC3-205ENST00000617641 M0QZ24 198 aa13.06□□□□□ -0.32
PCDHGC3-205ENST00000617641 SLURP1P55000 103 aa13.06□□□□□ -0.32
PCDHGC3-205ENST00000617641 NUTF2P61970 127 aaKnown RBP13.06□□□□□ -0.32
PCDHGC3-205ENST00000617641 KHDC1LQ5JSQ8 128 aa13.06□□□□□ -0.32
PCDHGC3-205ENST00000617641 RNASEKQ6P5S7 137 aaKnown RBP13.06□□□□□ -0.32
PCDHGC3-205ENST00000617641 ZFAND2AQ8N6M9 145 aa13.06□□□□□ -0.32
PCDHGC3-205ENST00000617641 ID1P41134 155 aa13.06□□□□□ -0.32
PCDHGC3-205ENST00000617641 ZNF493Q6ZR52 646 aa13.06□□□□□ -0.32
PCDHGC3-205ENST00000617641 RNF114Q9Y508 228 aa13.06□□□□□ -0.32
PCDHGC3-205ENST00000617641 CUBNO60494 3623 aa13.05□□□□□ -0.32
PCDHGC3-205ENST00000617641 C2orf70A6NJV1 201 aa13.05□□□□□ -0.32
PCDHGC3-205ENST00000617641 SCGB1D1O95968 90 aa13.05□□□□□ -0.32
PCDHGC3-205ENST00000617641 NTF3P20783 257 aa13.05□□□□□ -0.32
PCDHGC3-205ENST00000617641 TWIST1Q15672 202 aa13.05□□□□□ -0.32
PCDHGC3-205ENST00000617641 URB1-AS1Q96HZ7 61 aa13.05□□□□□ -0.32
PCDHGC3-205ENST00000617641 FASNP49327 2511 aaKnown RBP13.05□□□□□ -0.32
PCDHGC3-205ENST00000617641 DDTP30046 118 aa13.05□□□□□ -0.32
PCDHGC3-205ENST00000617641 NIT1Q86X76 327 aa13.05□□□□□ -0.32
PCDHGC3-205ENST00000617641 DUX3Q96PT4 197 aa13.05□□□□□ -0.32
PCDHGC3-205ENST00000617641 MSRB1Q9NZV6 116 aa13.04□□□□□ -0.32
PCDHGC3-205ENST00000617641 ZNF688P0C7X2 276 aa13.04□□□□□ -0.32
PCDHGC3-205ENST00000617641 AMN1Q8IY45 258 aa13.04□□□□□ -0.32
PCDHGC3-205ENST00000617641 C4orf3Q8WVX3 66 aa13.04□□□□□ -0.32
PCDHGC3-205ENST00000617641 FAM19A4Q96LR4 140 aa13.04□□□□□ -0.32
PCDHGC3-205ENST00000617641 HECTD1Q9ULT8 2610 aa13.03□□□□□ -0.32
PCDHGC3-205ENST00000617641 HSBP1O75506 76 aa13.03□□□□□ -0.32
PCDHGC3-205ENST00000617641 KIR3DS1Q14943 382 aa13.03□□□□□ -0.32
PCDHGC3-205ENST00000617641 SAMD13Q5VXD3 122 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms