RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 FAM3BP58499 235 aaPredicted RBP13.36□□□□□ -0.27
CDX1-202ENST00000616154 LYPD1Q8N2G4 141 aa13.36□□□□□ -0.27
CDX1-202ENST00000616154 C20orf144Q9BQM9 153 aa13.36□□□□□ -0.27
CDX1-202ENST00000616154 TRAV12-2A0A075B6T6 113 aa13.35□□□□□ -0.27
CDX1-202ENST00000616154 A0A1W2PRE2 83 aa13.35□□□□□ -0.27
CDX1-202ENST00000616154 PLAC8L1A1L4L8 177 aa13.35□□□□□ -0.27
CDX1-202ENST00000616154 ZNF705GA8MUZ8 300 aaPredicted RBP13.35□□□□□ -0.27
CDX1-202ENST00000616154 NPIPB6E9PJ23 425 aa13.35□□□□□ -0.27
CDX1-202ENST00000616154 PPT1P50897 306 aa13.35□□□□□ -0.27
CDX1-202ENST00000616154 TAS2R60P59551 318 aa13.34□□□□□ -0.27
CDX1-202ENST00000616154 C1orf134Q5TEV5 83 aa13.34□□□□□ -0.27
CDX1-202ENST00000616154 OR10J6PQ8NGY7 276 aa13.34□□□□□ -0.27
CDX1-202ENST00000616154 PCNPQ8WW12 178 aaKnown RBP13.34□□□□□ -0.27
CDX1-202ENST00000616154 PRELID1Q9Y255 219 aa13.34□□□□□ -0.27
CDX1-202ENST00000616154 FAM74A7A6NL05 159 aa13.33□□□□□ -0.28
CDX1-202ENST00000616154 PRM2P04554 102 aa13.33□□□□□ -0.28
CDX1-202ENST00000616154 RAB14P61106 215 aa13.33□□□□□ -0.28
CDX1-202ENST00000616154 BLNKQ8WV28 456 aa13.33□□□□□ -0.28
CDX1-202ENST00000616154 MANBALQ9NQG1 85 aa13.33□□□□□ -0.28
CDX1-202ENST00000616154 PPP1R14DQ9NXH3 145 aa13.33□□□□□ -0.28
CDX1-202ENST00000616154 A0A1B0GV50 99 aa13.32□□□□□ -0.28
CDX1-202ENST00000616154 ARL6IP6Q8N6S5 226 aa13.32□□□□□ -0.28
CDX1-202ENST00000616154 OTORQ9NRC9 128 aa13.32□□□□□ -0.28
CDX1-202ENST00000616154 GGTLC3B5MD39 225 aa13.31□□□□□ -0.28
CDX1-202ENST00000616154 H7BYZ3 331 aa13.31□□□□□ -0.28
CDX1-202ENST00000616154 ZNF575Q86XF7 245 aa13.31□□□□□ -0.28
CDX1-202ENST00000616154 CCDC28AQ8IWP9 274 aa13.31□□□□□ -0.28
CDX1-202ENST00000616154 IQCF2Q8IXL9 164 aa13.31□□□□□ -0.28
CDX1-202ENST00000616154 NKX6-2Q9C056 277 aaPredicted RBP13.31□□□□□ -0.28
CDX1-202ENST00000616154 Q9H3A6 140 aa13.31□□□□□ -0.28
CDX1-202ENST00000616154 ABCA13Q86UQ4 5058 aa13.31□□□□□ -0.28
CDX1-202ENST00000616154 M0R3E3 92 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 CT45A10P0DMU9 189 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 DEFB130BP0DP73 79 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 DEFB130AP0DP74 79 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 PRB4P10163 310 aaPredicted RBP13.3□□□□□ -0.28
CDX1-202ENST00000616154 AZU1P20160 251 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 TAGLN2P37802 199 aaKnown RBP13.3□□□□□ -0.28
CDX1-202ENST00000616154 RANP62826 216 aaKnown RBP13.3□□□□□ -0.28
CDX1-202ENST00000616154 KIR3DS1Q14943 382 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 GFI1BQ5VTD9 330 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 ZNF493Q6ZR52 646 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 RNASE8Q8TDE3 154 aaKnown RBP13.3□□□□□ -0.28
CDX1-202ENST00000616154 FAM19A4Q96LR4 140 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 LINC01587Q99440 93 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 ATG101Q9BSB4 218 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 MED9Q9NWA0 146 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 GNG13Q9P2W3 67 aa13.3□□□□□ -0.28
CDX1-202ENST00000616154 PAGE4O60829 102 aa13.29□□□□□ -0.28
CDX1-202ENST00000616154 NDUFS6O75380 124 aaKnown RBP13.29□□□□□ -0.28
CDX1-202ENST00000616154 BCL2P10415 239 aa13.29□□□□□ -0.28
CDX1-202ENST00000616154 EXOC3-AS1Q8N2X6 119 aa13.29□□□□□ -0.28
CDX1-202ENST00000616154 C16orf74Q96GX8 76 aa13.29□□□□□ -0.28
CDX1-202ENST00000616154 FAM210AQ96ND0 272 aa13.29□□□□□ -0.28
CDX1-202ENST00000616154 TXNDC17Q9BRA2 123 aa13.29□□□□□ -0.28
CDX1-202ENST00000616154 F5H768 121 aa13.28□□□□□ -0.28
CDX1-202ENST00000616154 IFNA1P01562 189 aa13.28□□□□□ -0.28
CDX1-202ENST00000616154 LEPP41159 167 aa13.28□□□□□ -0.28
CDX1-202ENST00000616154 UBE2G2P60604 165 aa13.28□□□□□ -0.28
CDX1-202ENST00000616154 ICAM4Q14773 271 aa13.28□□□□□ -0.28
CDX1-202ENST00000616154 TMEM263Q8WUH6 116 aaKnown RBP13.28□□□□□ -0.28
CDX1-202ENST00000616154 TCEAL7Q9BRU2 100 aa13.28□□□□□ -0.28
CDX1-202ENST00000616154 AAMDCQ9H7C9 122 aa13.28□□□□□ -0.28
CDX1-202ENST00000616154 HSPG2P98160 4391 aa13.28□□□□□ -0.28
CDX1-202ENST00000616154 PGPA6NDG6 321 aa13.27□□□□□ -0.29
CDX1-202ENST00000616154 KLLNB2CW77 178 aa13.27□□□□□ -0.29
CDX1-202ENST00000616154 ATP5G1P05496 136 aa13.27□□□□□ -0.29
CDX1-202ENST00000616154 ATP5G3P48201 142 aa13.27□□□□□ -0.29
CDX1-202ENST00000616154 ZNF506Q5JVG8 444 aa13.27□□□□□ -0.29
CDX1-202ENST00000616154 C9orf47Q6ZRZ4 202 aa13.27□□□□□ -0.29
CDX1-202ENST00000616154 C5orf17Q8NAS9 161 aa13.27□□□□□ -0.29
CDX1-202ENST00000616154 ZNRF2Q8NHG8 242 aa13.27□□□□□ -0.29
CDX1-202ENST00000616154 LINC00477Q96M19 166 aa13.27□□□□□ -0.29
CDX1-202ENST00000616154 VAX2Q9UIW0 290 aa13.27□□□□□ -0.29
CDX1-202ENST00000616154 NBDYA0A0U1RRE5 68 aa13.26□□□□□ -0.29
CDX1-202ENST00000616154 RBFOX3A6NFN3 312 aa13.26□□□□□ -0.29
CDX1-202ENST00000616154 CBY3A6NI87 242 aa13.26□□□□□ -0.29
CDX1-202ENST00000616154 CRISP2P16562 243 aa13.26□□□□□ -0.29
CDX1-202ENST00000616154 SUMO1P63165 101 aaKnown RBP13.26□□□□□ -0.29
CDX1-202ENST00000616154 MEF2BQ02080 365 aaPredicted RBP13.26□□□□□ -0.29
CDX1-202ENST00000616154 LINC00862A6NCI5 91 aa13.25□□□□□ -0.29
CDX1-202ENST00000616154 NUDT3O95989 172 aa13.25□□□□□ -0.29
CDX1-202ENST00000616154 SLC25A5P05141 298 aaKnown RBP13.25□□□□□ -0.29
CDX1-202ENST00000616154 LINC00612Q8N6U2 182 aa13.25□□□□□ -0.29
CDX1-202ENST00000616154 RXFP4Q8TDU9 374 aa13.25□□□□□ -0.29
CDX1-202ENST00000616154 AGPAT4-IT1Q9H0P7 198 aa13.25□□□□□ -0.29
CDX1-202ENST00000616154 TIMM8BQ9Y5J9 83 aaPredicted RBP13.25□□□□□ -0.29
CDX1-202ENST00000616154 TRBV7-9A0A0J9YWB2 115 aa13.24□□□□□ -0.29
CDX1-202ENST00000616154 TNP2Q05952 138 aa13.24□□□□□ -0.29
CDX1-202ENST00000616154 CST9LP1Q5W188 147 aa13.24□□□□□ -0.29
CDX1-202ENST00000616154 C6orf223Q8N319 242 aa13.24□□□□□ -0.29
CDX1-202ENST00000616154 C11orf52Q96A22 123 aa13.24□□□□□ -0.29
CDX1-202ENST00000616154 PYGO2Q9BRQ0 406 aa13.24□□□□□ -0.29
CDX1-202ENST00000616154 LINC00467Q9BRT7 94 aa13.24□□□□□ -0.29
CDX1-202ENST00000616154 EPDR1Q9UM22 224 aa13.24□□□□□ -0.29
CDX1-202ENST00000616154 LRP1BQ9NZR2 4599 aa13.24□□□□□ -0.29
CDX1-202ENST00000616154 RAB19A4D1S5 217 aa13.23□□□□□ -0.29
CDX1-202ENST00000616154 DIRC3C9JPN6 131 aa13.23□□□□□ -0.29
CDX1-202ENST00000616154 CCL18P55774 89 aa13.23□□□□□ -0.29
CDX1-202ENST00000616154 ERCC8Q13216 396 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms