RNA–Protein interactions for RNA: ENST00000600879.5

HIF3A-219, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-219ENST00000600879 TMEM167BQ9NRX6 74 aa6.93□□□□□ -1.3
HIF3A-219ENST00000600879 SRRM2Q9UQ35 2752 aaKnown RBP6.92□□□□□ -1.3
HIF3A-219ENST00000600879 VPS13BQ7Z7G8 4022 aa6.92□□□□□ -1.3
HIF3A-219ENST00000600879 TRBV19A0A075B6N1 114 aa6.92□□□□□ -1.3
HIF3A-219ENST00000600879 J3QL48 77 aa6.92□□□□□ -1.3
HIF3A-219ENST00000600879 SLC17A3O00476 420 aa6.92□□□□□ -1.3
HIF3A-219ENST00000600879 ISLRO14498 428 aa6.92□□□□□ -1.3
HIF3A-219ENST00000600879 SOCS3O14543 225 aa6.92□□□□□ -1.3
HIF3A-219ENST00000600879 PSMB3P49720 205 aa6.92□□□□□ -1.3
HIF3A-219ENST00000600879 BLOC1S1P78537 153 aa6.92□□□□□ -1.3
HIF3A-219ENST00000600879 SAMD13Q5VXD3 122 aa6.92□□□□□ -1.3
HIF3A-219ENST00000600879 FRZBQ92765 325 aa6.92□□□□□ -1.3
HIF3A-219ENST00000600879 SAT2Q96F10 170 aaPredicted RBP6.92□□□□□ -1.3
HIF3A-219ENST00000600879 TMPRSS5Q9H3S3 457 aa6.92□□□□□ -1.3
HIF3A-219ENST00000600879 ZNF331Q9NQX6 463 aaPredicted RBP6.92□□□□□ -1.3
HIF3A-219ENST00000600879 ZNF253O75346 499 aa6.91□□□□□ -1.3
HIF3A-219ENST00000600879 PDE6HQ13956 83 aa6.91□□□□□ -1.3
HIF3A-219ENST00000600879 IGFL4Q6B9Z1 124 aa6.91□□□□□ -1.3
HIF3A-219ENST00000600879 EBLN2Q6P2I7 272 aa6.91□□□□□ -1.3
HIF3A-219ENST00000600879 RNF182Q8N6D2 247 aa6.91□□□□□ -1.3
HIF3A-219ENST00000600879 AAMDCQ9H7C9 122 aa6.91□□□□□ -1.3
HIF3A-219ENST00000600879 TRAV8-2A0A0B4J237 113 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 A0A0J9YX75 114 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 LYRM9A8MSI8 78 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 M0R2Z0 102 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 NDUFB4O95168 129 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 ATP5G1P05496 136 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 AZU1P20160 251 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 BTF3P20290 206 aaKnown RBP6.9□□□□□ -1.3
HIF3A-219ENST00000600879 ATP5G3P48201 142 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 PPT1P50897 306 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 UBE2G2P60604 165 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 RANP62826 216 aaKnown RBP6.9□□□□□ -1.3
HIF3A-219ENST00000600879 ICAM4Q14773 271 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 PSG3Q16557 428 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 SPINK13Q1W4C9 94 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 TTC32Q5I0X7 151 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 EXOC3-AS1Q8N2X6 119 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 ZNF738Q8NE65 137 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 SUN5Q8TC36 379 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 PCNPQ8WW12 178 aaKnown RBP6.9□□□□□ -1.3
HIF3A-219ENST00000600879 C20orf173Q96LM9 149 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 IGF2BP2-AS1Q96M15 143 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 Q9H3A6 140 aa6.9□□□□□ -1.3
HIF3A-219ENST00000600879 TRAV1-1A0A0B4J248 108 aa6.89□□□□□ -1.31
HIF3A-219ENST00000600879 A0A0J9YY99 117 aa6.89□□□□□ -1.31
HIF3A-219ENST00000600879 PGPA6NDG6 321 aa6.89□□□□□ -1.31
HIF3A-219ENST00000600879 KRTAP10-1P60331 282 aa6.89□□□□□ -1.31
HIF3A-219ENST00000600879 CCL20P78556 96 aa6.89□□□□□ -1.31
HIF3A-219ENST00000600879 IFITM2Q01629 132 aa6.89□□□□□ -1.31
HIF3A-219ENST00000600879 CLUHP3Q96NS8 147 aa6.89□□□□□ -1.31
HIF3A-219ENST00000600879 OTORQ9NRC9 128 aa6.89□□□□□ -1.31
HIF3A-219ENST00000600879 PRELID1Q9Y255 219 aa6.89□□□□□ -1.31
HIF3A-219ENST00000600879 TRAV12-2A0A075B6T6 113 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 A0A1W2PRE2 83 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 PLAC8L1A1L4L8 177 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 FAM74A7A6NL05 159 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 M0R3E3 92 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 PAGE4O60829 102 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 INSP01308 110 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 IFNA1P01562 189 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 SLC25A5P05141 298 aaKnown RBP6.88□□□□□ -1.31
HIF3A-219ENST00000600879 PRB4P10163 310 aaPredicted RBP6.88□□□□□ -1.31
HIF3A-219ENST00000600879 HTN1P15515 57 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 LINC00315P59091 139 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 RAB14P61106 215 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 SUMO1P63165 101 aaKnown RBP6.88□□□□□ -1.31
HIF3A-219ENST00000600879 OR5I1Q13606 314 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 CST9LP1Q5W188 147 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 AMTNQ6UX39 209 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 CMTM2Q8TAZ6 248 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 RPUSD4Q96CM3 377 aaKnown RBP6.88□□□□□ -1.31
HIF3A-219ENST00000600879 MANBALQ9NQG1 85 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 GNG13Q9P2W3 67 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 RPH3ALQ9UNE2 315 aa6.88□□□□□ -1.31
HIF3A-219ENST00000600879 TRAV26-1A0A087WT03 109 aa6.87□□□□□ -1.31
HIF3A-219ENST00000600879 CBY3A6NI87 242 aa6.87□□□□□ -1.31
HIF3A-219ENST00000600879 CRXO43186 299 aaPredicted RBP6.87□□□□□ -1.31
HIF3A-219ENST00000600879 NMBP08949 121 aa6.87□□□□□ -1.31
HIF3A-219ENST00000600879 CSN1S1P47710 185 aa6.87□□□□□ -1.31
HIF3A-219ENST00000600879 ESRGQ1W209 222 aa6.87□□□□□ -1.31
HIF3A-219ENST00000600879 RXFP4Q8TDU9 374 aa6.87□□□□□ -1.31
HIF3A-219ENST00000600879 MRPL53Q96EL3 112 aaKnown RBP6.87□□□□□ -1.31
HIF3A-219ENST00000600879 ARL2-SNX15V9GYD0 113 aa6.87□□□□□ -1.31
HIF3A-219ENST00000600879 GGTLC3B5MD39 225 aa6.86□□□□□ -1.31
HIF3A-219ENST00000600879 DNAH10OSP0CZ25 163 aa6.86□□□□□ -1.31
HIF3A-219ENST00000600879 CNN1P51911 297 aaKnown RBP6.86□□□□□ -1.31
HIF3A-219ENST00000600879 GNG5P63218 68 aa6.86□□□□□ -1.31
HIF3A-219ENST00000600879 HIST1H1AQ02539 215 aaPredicted RBP6.86□□□□□ -1.31
HIF3A-219ENST00000600879 C5orf17Q8NAS9 161 aa6.86□□□□□ -1.31
HIF3A-219ENST00000600879 OR8A1Q8NGG7 326 aa6.86□□□□□ -1.31
HIF3A-219ENST00000600879 OR10J6PQ8NGY7 276 aa6.86□□□□□ -1.31
HIF3A-219ENST00000600879 LYPD6BQ8NI32 183 aa6.86□□□□□ -1.31
HIF3A-219ENST00000600879 LINC01587Q99440 93 aa6.86□□□□□ -1.31
HIF3A-219ENST00000600879 NKX6-2Q9C056 277 aaPredicted RBP6.86□□□□□ -1.31
HIF3A-219ENST00000600879 PGPEP1Q9NXJ5 209 aa6.86□□□□□ -1.31
HIF3A-219ENST00000600879 HMCN2Q8NDA2 5059 aa6.85□□□□□ -1.31
HIF3A-219ENST00000600879 IGKV2-40A0A087WW87 121 aaPredicted RBP6.85□□□□□ -1.31
HIF3A-219ENST00000600879 DIRC3C9JPN6 131 aa6.85□□□□□ -1.31
HIF3A-219ENST00000600879 PRAC2D3DTV9 90 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms