RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 GNG4P50150 75 aa10.48□□□□□ -0.73
UPF1-211ENST00000600868 KIR3DS1Q14943 382 aa10.48□□□□□ -0.73
UPF1-211ENST00000600868 SMUG1Q53HV7 270 aa10.48□□□□□ -0.73
UPF1-211ENST00000600868 SOHLH1Q5JUK2 328 aa10.48□□□□□ -0.73
UPF1-211ENST00000600868 GFI1BQ5VTD9 330 aa10.48□□□□□ -0.73
UPF1-211ENST00000600868 SMIM7Q9BQ49 75 aa10.48□□□□□ -0.73
UPF1-211ENST00000600868 C20orf144Q9BQM9 153 aa10.48□□□□□ -0.73
UPF1-211ENST00000600868 MLST8Q9BVC4 326 aa10.48□□□□□ -0.73
UPF1-211ENST00000600868 TRAV12-2A0A075B6T6 113 aa10.47□□□□□ -0.73
UPF1-211ENST00000600868 C7orf71A4D174 169 aa10.47□□□□□ -0.73
UPF1-211ENST00000600868 ZNF727A8MUV8 499 aa10.47□□□□□ -0.73
UPF1-211ENST00000600868 INSP01308 110 aa10.47□□□□□ -0.73
UPF1-211ENST00000600868 IGLV2-8P01709 118 aa10.47□□□□□ -0.73
UPF1-211ENST00000600868 SFTA3P0C7M3 94 aa10.47□□□□□ -0.73
UPF1-211ENST00000600868 RNASE4P34096 147 aaKnown RBP10.47□□□□□ -0.73
UPF1-211ENST00000600868 PRR9Q5T870 116 aa10.47□□□□□ -0.73
UPF1-211ENST00000600868 Q6AWC8 147 aa10.47□□□□□ -0.73
UPF1-211ENST00000600868 Q6ZWC4 215 aa10.47□□□□□ -0.73
UPF1-211ENST00000600868 CSNK1G2-AS1Q8NCQ2 148 aa10.47□□□□□ -0.73
UPF1-211ENST00000600868 LY96Q9Y6Y9 160 aa10.47□□□□□ -0.73
UPF1-211ENST00000600868 J3KRW8 73 aa10.46□□□□□ -0.73
UPF1-211ENST00000600868 GCGP01275 180 aa10.46□□□□□ -0.73
UPF1-211ENST00000600868 BTN1A1Q13410 526 aa10.46□□□□□ -0.73
UPF1-211ENST00000600868 NDUFA5Q16718 116 aa10.46□□□□□ -0.73
UPF1-211ENST00000600868 ZC2HC1AQ96GY0 325 aa10.46□□□□□ -0.73
UPF1-211ENST00000600868 MEGF8Q7Z7M0 2845 aa10.45□□□□□ -0.74
UPF1-211ENST00000600868 TMEM218A2RU14 115 aa10.45□□□□□ -0.74
UPF1-211ENST00000600868 ZNF324O75467 553 aaPredicted RBP10.45□□□□□ -0.74
UPF1-211ENST00000600868 ZNF80P51504 273 aaPredicted RBP10.45□□□□□ -0.74
UPF1-211ENST00000600868 TMEM256Q8N2U0 113 aa10.45□□□□□ -0.74
UPF1-211ENST00000600868 NHLRC2Q8NBF2 726 aa10.45□□□□□ -0.74
UPF1-211ENST00000600868 TRAV12-3A0A0B4J271 114 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 TRAV21A0A0B4J279 112 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 PGPEP1LA6NFU8 196 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 PFN1P07737 140 aaKnown RBP10.44□□□□□ -0.74
UPF1-211ENST00000600868 RBMY1A1P0DJD3 496 aaKnown RBP10.44□□□□□ -0.74
UPF1-211ENST00000600868 RBMY1CP0DJD4 496 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 CRIP1P50238 77 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 RBMY1FQ15415 496 aaKnown RBP10.44□□□□□ -0.74
UPF1-211ENST00000600868 TMEM241Q24JQ0 296 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 SBSPONQ8IVN8 264 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 C1orf158Q8N1D5 194 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 OCC1Q8TAD7 63 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 NIPSNAP3BQ9BS92 247 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 BIN3Q9NQY0 253 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 TP53TG1Q9Y2A0 90 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 GOLT1BQ9Y3E0 138 aa10.44□□□□□ -0.74
UPF1-211ENST00000600868 FABP5P3A8MUU1 101 aa10.43□□□□□ -0.74
UPF1-211ENST00000600868 H7BYZ3 331 aa10.43□□□□□ -0.74
UPF1-211ENST00000600868 MGST1P10620 155 aaKnown RBP10.43□□□□□ -0.74
UPF1-211ENST00000600868 DEFB135Q30KP9 77 aa10.43□□□□□ -0.74
UPF1-211ENST00000600868 FAM162BQ5T6X4 162 aa10.43□□□□□ -0.74
UPF1-211ENST00000600868 ZNF705AQ6ZN79 300 aaPredicted RBP10.43□□□□□ -0.74
UPF1-211ENST00000600868 RNF183Q96D59 192 aa10.43□□□□□ -0.74
UPF1-211ENST00000600868 RCHY1Q96PM5 261 aa10.43□□□□□ -0.74
UPF1-211ENST00000600868 B9D2Q9BPU9 175 aa10.43□□□□□ -0.74
UPF1-211ENST00000600868 NAT8Q9UHE5 227 aa10.43□□□□□ -0.74
UPF1-211ENST00000600868 SPRY2O43597 315 aa10.42□□□□□ -0.74
UPF1-211ENST00000600868 Q6ZQT7 251 aa10.42□□□□□ -0.74
UPF1-211ENST00000600868 LINC01551Q86U37 167 aa10.42□□□□□ -0.74
UPF1-211ENST00000600868 SLC7A5P1Q8MH63 180 aa10.42□□□□□ -0.74
UPF1-211ENST00000600868 LINC01587Q99440 93 aa10.42□□□□□ -0.74
UPF1-211ENST00000600868 TM2D3Q9BRN9 247 aa10.42□□□□□ -0.74
UPF1-211ENST00000600868 LINC00467Q9BRT7 94 aa10.42□□□□□ -0.74
UPF1-211ENST00000600868 TMEM208Q9BTX3 173 aa10.42□□□□□ -0.74
UPF1-211ENST00000600868 F8W036 122 aa10.41□□□□□ -0.74
UPF1-211ENST00000600868 K7EN84 100 aa10.41□□□□□ -0.74
UPF1-211ENST00000600868 SH2D1AO60880 128 aa10.41□□□□□ -0.74
UPF1-211ENST00000600868 NEU1Q99519 415 aa10.41□□□□□ -0.74
UPF1-211ENST00000600868 PYGO2Q9BRQ0 406 aa10.41□□□□□ -0.74
UPF1-211ENST00000600868 SEC11CQ9BY50 192 aa10.41□□□□□ -0.74
UPF1-211ENST00000600868 SDF2L1Q9HCN8 221 aa10.41□□□□□ -0.74
UPF1-211ENST00000600868 IGHV3OR16-12A0A075B7B8 117 aa10.4□□□□□ -0.74
UPF1-211ENST00000600868 ADCYAP1P18509 176 aa10.4□□□□□ -0.74
UPF1-211ENST00000600868 RPL23P62829 140 aaKnown RBP10.4□□□□□ -0.74
UPF1-211ENST00000600868 OR5I1Q13606 314 aa10.4□□□□□ -0.74
UPF1-211ENST00000600868 PRR27Q6MZM9 219 aa10.4□□□□□ -0.74
UPF1-211ENST00000600868 SPATA25Q9BR10 227 aa10.4□□□□□ -0.74
UPF1-211ENST00000600868 OVOL2Q9BRP0 275 aa10.4□□□□□ -0.74
UPF1-211ENST00000600868 IGHV1OR15-1A0A075B7D0 117 aa10.39□□□□□ -0.75
UPF1-211ENST00000600868 C19orf71A6NCJ1 209 aa10.39□□□□□ -0.75
UPF1-211ENST00000600868 SMIM9A6NGZ8 99 aa10.39□□□□□ -0.75
UPF1-211ENST00000600868 TDRG1Q3Y452 100 aa10.39□□□□□ -0.75
UPF1-211ENST00000600868 C10orf91Q5T1B1 145 aa10.39□□□□□ -0.75
UPF1-211ENST00000600868 FAM159AQ6UWV7 190 aa10.39□□□□□ -0.75
UPF1-211ENST00000600868 OR11H2Q8NH07 326 aa10.39□□□□□ -0.75
UPF1-211ENST00000600868 DAZAP1Q96EP5 407 aaKnown RBP10.39□□□□□ -0.75
UPF1-211ENST00000600868 C11orf21Q9P2W6 132 aa10.39□□□□□ -0.75
UPF1-211ENST00000600868 X6R8D5 127 aa10.39□□□□□ -0.75
UPF1-211ENST00000600868 NBEAL2Q6ZNJ1 2754 aa10.39□□□□□ -0.75
UPF1-211ENST00000600868 PNRC1Q12796 327 aaPredicted RBP10.38□□□□□ -0.75
UPF1-211ENST00000600868 ADIRFQ15847 76 aa10.38□□□□□ -0.75
UPF1-211ENST00000600868 ANXA2RQ3ZCQ2 193 aa10.38□□□□□ -0.75
UPF1-211ENST00000600868 LINC01559Q495D7 138 aa10.38□□□□□ -0.75
UPF1-211ENST00000600868 MUC21Q5SSG8 566 aa10.38□□□□□ -0.75
UPF1-211ENST00000600868 FAM231DQ6ZW35 169 aa10.38□□□□□ -0.75
UPF1-211ENST00000600868 ISOC2Q96AB3 205 aa10.38□□□□□ -0.75
UPF1-211ENST00000600868 KCNS1Q96KK3 526 aa10.38□□□□□ -0.75
UPF1-211ENST00000600868 NAGKQ9UJ70 344 aa10.38□□□□□ -0.75
UPF1-211ENST00000600868 IGKV3D-20A0A0C4DH25 116 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms