RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 VAX2Q9UIW0 290 aa11.97□□□□□ -0.49
SHKBP1-219ENST00000599575 IGHV3OR16-12A0A075B7B8 117 aa11.96□□□□□ -0.49
SHKBP1-219ENST00000599575 TRAV8-1A0A0A6YYK1 113 aa11.96□□□□□ -0.49
SHKBP1-219ENST00000599575 IGHV4-28A0A0C4DH34 117 aa11.96□□□□□ -0.49
SHKBP1-219ENST00000599575 NDUFS6O75380 124 aaKnown RBP11.96□□□□□ -0.49
SHKBP1-219ENST00000599575 ZNF324O75467 553 aaPredicted RBP11.96□□□□□ -0.49
SHKBP1-219ENST00000599575 ATP5G3P48201 142 aa11.96□□□□□ -0.49
SHKBP1-219ENST00000599575 UBE2G1P62253 170 aa11.96□□□□□ -0.49
SHKBP1-219ENST00000599575 Q6AWC8 147 aa11.96□□□□□ -0.49
SHKBP1-219ENST00000599575 C11orf52Q96A22 123 aa11.96□□□□□ -0.49
SHKBP1-219ENST00000599575 TRAV12-3A0A0B4J271 114 aa11.95□□□□□ -0.5
SHKBP1-219ENST00000599575 A0A0J9YWU9 116 aa11.95□□□□□ -0.5
SHKBP1-219ENST00000599575 RNASE4P34096 147 aaKnown RBP11.95□□□□□ -0.5
SHKBP1-219ENST00000599575 TMEM183BQ1AE95 376 aa11.95□□□□□ -0.5
SHKBP1-219ENST00000599575 COX8CQ7Z4L0 72 aa11.95□□□□□ -0.5
SHKBP1-219ENST00000599575 TRAV21A0A0B4J279 112 aa11.94□□□□□ -0.5
SHKBP1-219ENST00000599575 RBMY1A1P0DJD3 496 aaKnown RBP11.94□□□□□ -0.5
SHKBP1-219ENST00000599575 RBMY1CP0DJD4 496 aa11.94□□□□□ -0.5
SHKBP1-219ENST00000599575 AKR1C3P42330 323 aa11.94□□□□□ -0.5
SHKBP1-219ENST00000599575 KIR3DS1Q14943 382 aa11.94□□□□□ -0.5
SHKBP1-219ENST00000599575 RBMY1FQ15415 496 aaKnown RBP11.94□□□□□ -0.5
SHKBP1-219ENST00000599575 SMUG1Q53HV7 270 aa11.94□□□□□ -0.5
SHKBP1-219ENST00000599575 C2CD4CQ8TF44 421 aa11.94□□□□□ -0.5
SHKBP1-219ENST00000599575 TMEM263Q8WUH6 116 aaKnown RBP11.94□□□□□ -0.5
SHKBP1-219ENST00000599575 C16orf74Q96GX8 76 aa11.94□□□□□ -0.5
SHKBP1-219ENST00000599575 LOC102723971A0A1B0GUV8 181 aa11.93□□□□□ -0.5
SHKBP1-219ENST00000599575 J3KRW8 73 aa11.93□□□□□ -0.5
SHKBP1-219ENST00000599575 BTN1A1Q13410 526 aa11.93□□□□□ -0.5
SHKBP1-219ENST00000599575 ANXA2RQ3ZCQ2 193 aa11.93□□□□□ -0.5
SHKBP1-219ENST00000599575 PRNTQ86SH4 94 aa11.93□□□□□ -0.5
SHKBP1-219ENST00000599575 Q86TA4 180 aa11.93□□□□□ -0.5
SHKBP1-219ENST00000599575 TVP23CQ96ET8 276 aa11.93□□□□□ -0.5
SHKBP1-219ENST00000599575 LTAP01374 205 aa11.92□□□□□ -0.5
SHKBP1-219ENST00000599575 TDRG1Q3Y452 100 aa11.92□□□□□ -0.5
SHKBP1-219ENST00000599575 EIF4E3Q8N5X7 224 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-219ENST00000599575 LINC00479Q96M42 142 aa11.92□□□□□ -0.5
SHKBP1-219ENST00000599575 IGHV1OR15-1A0A075B7D0 117 aa11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 TRAV34A0A0B4J273 112 aa11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 SCO2A0A1W2PP80 73 aa11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 RBFOX3A6NFN3 312 aa11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 TMEM250H0YL14 139 aa11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 RGS13O14921 159 aa11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 PFN1P07737 140 aaKnown RBP11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 SPART-AS1P0CW21 52 aa11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 PRR9Q5T870 116 aa11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 ZNF767PQ75MW2 155 aa11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 RNASE8Q8TDE3 154 aaKnown RBP11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 SMIM12Q96EX1 92 aa11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 KCNS1Q96KK3 526 aa11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 SGK494Q96LW2 274 aa11.91□□□□□ -0.5
SHKBP1-219ENST00000599575 LYRM9A8MSI8 78 aa11.9□□□□□ -0.5
SHKBP1-219ENST00000599575 ZNF705GA8MUZ8 300 aaPredicted RBP11.9□□□□□ -0.5
SHKBP1-219ENST00000599575 RAB14P61106 215 aa11.9□□□□□ -0.5
SHKBP1-219ENST00000599575 ZNF506Q5JVG8 444 aa11.9□□□□□ -0.5
SHKBP1-219ENST00000599575 IBA57Q5T440 356 aaKnown RBP11.9□□□□□ -0.5
SHKBP1-219ENST00000599575 FAM159AQ6UWV7 190 aa11.9□□□□□ -0.5
SHKBP1-219ENST00000599575 TMEM183AQ8IXX5 376 aa11.9□□□□□ -0.5
SHKBP1-219ENST00000599575 C11orf45Q8TAV5 145 aa11.9□□□□□ -0.5
SHKBP1-219ENST00000599575 CXorf65A6NEN9 183 aa11.89□□□□□ -0.51
SHKBP1-219ENST00000599575 C3orf84H3BNL1 204 aa11.89□□□□□ -0.51
SHKBP1-219ENST00000599575 GCGP01275 180 aa11.89□□□□□ -0.51
SHKBP1-219ENST00000599575 HTN1P15515 57 aa11.89□□□□□ -0.51
SHKBP1-219ENST00000599575 MUC7Q8TAX7 377 aa11.89□□□□□ -0.51
SHKBP1-219ENST00000599575 FAM210AQ96ND0 272 aa11.89□□□□□ -0.51
SHKBP1-219ENST00000599575 SMDT1Q9H4I9 107 aa11.89□□□□□ -0.51
SHKBP1-219ENST00000599575 TP53TG3Q9ULZ0 132 aa11.89□□□□□ -0.51
SHKBP1-219ENST00000599575 TIMM8BQ9Y5J9 83 aaPredicted RBP11.89□□□□□ -0.51
SHKBP1-219ENST00000599575 CBY3A6NI87 242 aa11.88□□□□□ -0.51
SHKBP1-219ENST00000599575 FABP5P3A8MUU1 101 aa11.88□□□□□ -0.51
SHKBP1-219ENST00000599575 RPL35P42766 123 aaKnown RBP11.88□□□□□ -0.51
SHKBP1-219ENST00000599575 MED9Q9NWA0 146 aa11.88□□□□□ -0.51
SHKBP1-219ENST00000599575 DKK2Q9UBU2 259 aa11.88□□□□□ -0.51
SHKBP1-219ENST00000599575 TRGV11A0A075B6L2 103 aa11.87□□□□□ -0.51
SHKBP1-219ENST00000599575 SNURFLB1AK76 121 aa11.87□□□□□ -0.51
SHKBP1-219ENST00000599575 DEFB4AO15263 64 aa11.87□□□□□ -0.51
SHKBP1-219ENST00000599575 AZU1P20160 251 aa11.87□□□□□ -0.51
SHKBP1-219ENST00000599575 DAZ2Q13117 558 aaKnown RBP11.87□□□□□ -0.51
SHKBP1-219ENST00000599575 BAGE2Q86Y30 109 aa11.87□□□□□ -0.51
SHKBP1-219ENST00000599575 C8orf49Q96NF6 230 aa11.87□□□□□ -0.51
SHKBP1-219ENST00000599575 MLST8Q9BVC4 326 aa11.87□□□□□ -0.51
SHKBP1-219ENST00000599575 EIF5A2Q9GZV4 153 aaKnown RBP11.87□□□□□ -0.51
SHKBP1-219ENST00000599575 FAM162BQ5T6X4 162 aa11.86□□□□□ -0.51
SHKBP1-219ENST00000599575 SDF2L1Q9HCN8 221 aa11.86□□□□□ -0.51
SHKBP1-219ENST00000599575 BIN3Q9NQY0 253 aa11.86□□□□□ -0.51
SHKBP1-219ENST00000599575 PLAC8L1A1L4L8 177 aa11.85□□□□□ -0.51
SHKBP1-219ENST00000599575 GNG4P50150 75 aa11.85□□□□□ -0.51
SHKBP1-219ENST00000599575 ZNF80P51504 273 aaPredicted RBP11.85□□□□□ -0.51
SHKBP1-219ENST00000599575 EMP1P54849 157 aa11.85□□□□□ -0.51
SHKBP1-219ENST00000599575 ZNF674Q2M3X9 581 aa11.85□□□□□ -0.51
SHKBP1-219ENST00000599575 TOR2AQ5JU69 321 aa11.85□□□□□ -0.51
SHKBP1-219ENST00000599575 FAM222AQ5U5X8 452 aa11.85□□□□□ -0.51
SHKBP1-219ENST00000599575 TCL1AP56279 114 aa11.84□□□□□ -0.51
SHKBP1-219ENST00000599575 ZNF415Q09FC8 603 aa11.84□□□□□ -0.51
SHKBP1-219ENST00000599575 C11orf72Q8NBR9 251 aa11.84□□□□□ -0.51
SHKBP1-219ENST00000599575 ZC2HC1AQ96GY0 325 aa11.84□□□□□ -0.51
SHKBP1-219ENST00000599575 SPXQ9BT56 116 aa11.84□□□□□ -0.51
SHKBP1-219ENST00000599575 C9JCJ5 164 aa11.83□□□□□ -0.52
SHKBP1-219ENST00000599575 PEA15Q15121 130 aa11.83□□□□□ -0.52
SHKBP1-219ENST00000599575 LGALS9BQ3B8N2 356 aa11.83□□□□□ -0.52
SHKBP1-219ENST00000599575 CLLU1Q5K131 121 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms