RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TMEM189A5PLL7 270 aa10.11□□□□□ -0.79
SHKBP1-217ENST00000598558 PAGE4O60829 102 aa10.11□□□□□ -0.79
SHKBP1-217ENST00000598558 SPART-AS1P0CW21 52 aa10.11□□□□□ -0.79
SHKBP1-217ENST00000598558 C8orf49Q96NF6 230 aa10.11□□□□□ -0.79
SHKBP1-217ENST00000598558 NIPSNAP3BQ9BS92 247 aa10.11□□□□□ -0.79
SHKBP1-217ENST00000598558 PSG8Q9UQ74 426 aa10.11□□□□□ -0.79
SHKBP1-217ENST00000598558 LENEPQ9Y5L5 61 aa10.11□□□□□ -0.79
SHKBP1-217ENST00000598558 F6UZH7 168 aa10.1□□□□□ -0.79
SHKBP1-217ENST00000598558 ZNF80P51504 273 aaPredicted RBP10.1□□□□□ -0.79
SHKBP1-217ENST00000598558 TRAV1-1A0A0B4J248 108 aa10.09□□□□□ -0.79
SHKBP1-217ENST00000598558 PEX7O00628 323 aa10.09□□□□□ -0.79
SHKBP1-217ENST00000598558 IFNA7P01567 189 aa10.09□□□□□ -0.79
SHKBP1-217ENST00000598558 RAB5CP51148 216 aa10.09□□□□□ -0.79
SHKBP1-217ENST00000598558 CST9LP1Q5W188 147 aa10.09□□□□□ -0.79
SHKBP1-217ENST00000598558 Q6AWC8 147 aa10.09□□□□□ -0.79
SHKBP1-217ENST00000598558 CYB561D1Q8N8Q1 229 aa10.09□□□□□ -0.79
SHKBP1-217ENST00000598558 C11orf72Q8NBR9 251 aa10.09□□□□□ -0.79
SHKBP1-217ENST00000598558 PYGO2Q9BRQ0 406 aa10.09□□□□□ -0.79
SHKBP1-217ENST00000598558 LINC00467Q9BRT7 94 aa10.09□□□□□ -0.79
SHKBP1-217ENST00000598558 ATG101Q9BSB4 218 aa10.09□□□□□ -0.79
SHKBP1-217ENST00000598558 TREM1Q9NP99 234 aa10.09□□□□□ -0.79
SHKBP1-217ENST00000598558 SERTM2A0A1B0GWG4 89 aa10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 FLI1Q01543 452 aaPredicted RBP10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 MUC21Q5SSG8 566 aa10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 EIF5AL1Q6IS14 154 aaKnown RBP10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 ALKAL2Q6UX46 152 aa10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 ZNF493Q6ZR52 646 aa10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 PRNTQ86SH4 94 aa10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 TMEM75Q8N9X5 138 aa10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 TMEM263Q8WUH6 116 aaKnown RBP10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 C16orf74Q96GX8 76 aa10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 NOP10Q9NPE3 64 aaKnown RBP10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 GSN-AS1Q9NRJ2 163 aa10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 C11orf21Q9P2W6 132 aa10.08□□□□□ -0.8
SHKBP1-217ENST00000598558 TENM2Q9NT68 2774 aa10.07□□□□□ -0.8
SHKBP1-217ENST00000598558 IGHV1OR15-1A0A075B7D0 117 aa10.07□□□□□ -0.8
SHKBP1-217ENST00000598558 NUPR2A6NF83 97 aa10.07□□□□□ -0.8
SHKBP1-217ENST00000598558 ANXA2RQ3ZCQ2 193 aa10.07□□□□□ -0.8
SHKBP1-217ENST00000598558 EIF4E3Q8N5X7 224 aaKnown RBP10.07□□□□□ -0.8
SHKBP1-217ENST00000598558 NKX6-2Q9C056 277 aaPredicted RBP10.07□□□□□ -0.8
SHKBP1-217ENST00000598558 KLF12Q9Y4X4 402 aa10.07□□□□□ -0.8
SHKBP1-217ENST00000598558 TRAV10A0A0B4J240 114 aa10.06□□□□□ -0.8
SHKBP1-217ENST00000598558 LYRM9A8MSI8 78 aa10.06□□□□□ -0.8
SHKBP1-217ENST00000598558 DEFB130BP0DP73 79 aa10.06□□□□□ -0.8
SHKBP1-217ENST00000598558 DEFB130AP0DP74 79 aa10.06□□□□□ -0.8
SHKBP1-217ENST00000598558 HIST1H2BAQ96A08 127 aa10.06□□□□□ -0.8
SHKBP1-217ENST00000598558 MDFICQ9P1T7 246 aa10.06□□□□□ -0.8
SHKBP1-217ENST00000598558 GNG13Q9P2W3 67 aa10.06□□□□□ -0.8
SHKBP1-217ENST00000598558 TIMM8BQ9Y5J9 83 aaPredicted RBP10.06□□□□□ -0.8
SHKBP1-217ENST00000598558 ARL2-SNX15V9GYD0 113 aa10.06□□□□□ -0.8
SHKBP1-217ENST00000598558 SACSQ9NZJ4 4579 aa10.06□□□□□ -0.8
SHKBP1-217ENST00000598558 DEFB131BA0A096LNP1 70 aa10.05□□□□□ -0.8
SHKBP1-217ENST00000598558 SCO2A0A1W2PP80 73 aa10.05□□□□□ -0.8
SHKBP1-217ENST00000598558 CBY3A6NI87 242 aa10.05□□□□□ -0.8
SHKBP1-217ENST00000598558 RGS13O14921 159 aa10.05□□□□□ -0.8
SHKBP1-217ENST00000598558 GNRH2O43555 120 aa10.05□□□□□ -0.8
SHKBP1-217ENST00000598558 CRIP1P50238 77 aa10.05□□□□□ -0.8
SHKBP1-217ENST00000598558 DAD1P61803 113 aa10.05□□□□□ -0.8
SHKBP1-217ENST00000598558 LINC00612Q8N6U2 182 aa10.05□□□□□ -0.8
SHKBP1-217ENST00000598558 C2CD4CQ8TF44 421 aa10.05□□□□□ -0.8
SHKBP1-217ENST00000598558 RYR3Q15413 4870 aa10.05□□□□□ -0.8
SHKBP1-217ENST00000598558 IGLL5B9A064 214 aa10.04□□□□□ -0.8
SHKBP1-217ENST00000598558 C11orf94C9JXX5 98 aa10.04□□□□□ -0.8
SHKBP1-217ENST00000598558 K7EQM0 130 aa10.04□□□□□ -0.8
SHKBP1-217ENST00000598558 GCGP01275 180 aa10.04□□□□□ -0.8
SHKBP1-217ENST00000598558 DAZ2Q13117 558 aaKnown RBP10.04□□□□□ -0.8
SHKBP1-217ENST00000598558 Q86TA4 180 aa10.04□□□□□ -0.8
SHKBP1-217ENST00000598558 APLNQ9ULZ1 77 aa10.04□□□□□ -0.8
SHKBP1-217ENST00000598558 TRAV21A0A0B4J279 112 aa10.03□□□□□ -0.8
SHKBP1-217ENST00000598558 TEX48A0A1B0GUV7 120 aa10.03□□□□□ -0.8
SHKBP1-217ENST00000598558 HTN3P15516 51 aa10.03□□□□□ -0.8
SHKBP1-217ENST00000598558 Q6ZTI0 123 aa10.03□□□□□ -0.8
SHKBP1-217ENST00000598558 ZNF575Q86XF7 245 aa10.03□□□□□ -0.8
SHKBP1-217ENST00000598558 NAGKQ9UJ70 344 aa10.03□□□□□ -0.8
SHKBP1-217ENST00000598558 KLK5Q9Y337 293 aaPredicted RBP10.03□□□□□ -0.8
SHKBP1-217ENST00000598558 LYSTQ99698 3801 aa10.03□□□□□ -0.8
SHKBP1-217ENST00000598558 TRBV6-1A0A0K0K1D8 114 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 LCE6AA0A183 80 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 GAGE12BA1L429 117 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 SNURFLB1AK76 121 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 GAGE7O76087 117 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 GAGE12FP0CL80 117 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 GAGE12GP0CL81 117 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 GAGE12IP0CL82 117 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 TCL1AP56279 114 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 TMEM183BQ1AE95 376 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 TDRG1Q3Y452 100 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 SMUG1Q53HV7 270 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 SAPCD1Q5SSQ6 148 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 TMEM183AQ8IXX5 376 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 ZC2HC1AQ96GY0 325 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 NDFIP1Q9BT67 221 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 RYR2Q92736 4967 aa10.02□□□□□ -0.81
SHKBP1-217ENST00000598558 DNAH1Q9P2D7 4330 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 IGHV4-4A0A075B6R2 117 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 FBLL1A6NHQ2 334 aaKnown RBP10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 SPINK4O60575 86 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 LTAP01374 205 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 TYMSP04818 313 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 AKR1C3P42330 323 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms