RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 FAM104BQ5XKR9 115 aa9.67□□□□□ -0.86
USHBP1-207ENST00000597928 UBE2V1Q13404 147 aa9.67□□□□□ -0.86
USHBP1-207ENST00000597928 TMEM97Q5BJF2 176 aa9.67□□□□□ -0.86
USHBP1-207ENST00000597928 RASL11AQ6T310 242 aa9.67□□□□□ -0.86
USHBP1-207ENST00000597928 PET117Q6UWS5 81 aa9.67□□□□□ -0.86
USHBP1-207ENST00000597928 EEF1AKMT3Q96AZ1 226 aa9.67□□□□□ -0.86
USHBP1-207ENST00000597928 JMJD8Q96S16 334 aa9.67□□□□□ -0.86
USHBP1-207ENST00000597928 A0A1B0GXF2 115 aa9.67□□□□□ -0.86
USHBP1-207ENST00000597928 K7ERJ3 54 aa9.67□□□□□ -0.86
USHBP1-207ENST00000597928 ST20Q9HBF5 79 aa9.67□□□□□ -0.86
USHBP1-207ENST00000597928 ESDP10768 282 aa9.66□□□□□ -0.86
USHBP1-207ENST00000597928 CTRLP40313 264 aa9.66□□□□□ -0.86
USHBP1-207ENST00000597928 CFHR4Q92496 578 aa9.66□□□□□ -0.86
USHBP1-207ENST00000597928 ZNF747Q9BV97 191 aa9.66□□□□□ -0.86
USHBP1-207ENST00000597928 ZNF492Q9P255 531 aa9.66□□□□□ -0.86
USHBP1-207ENST00000597928 KLF12Q9Y4X4 402 aa9.66□□□□□ -0.86
USHBP1-207ENST00000597928 HAX1O00165 279 aa9.66□□□□□ -0.86
USHBP1-207ENST00000597928 TRBV12-3P01733 135 aa9.66□□□□□ -0.86
USHBP1-207ENST00000597928 IGHV3-64A0A075B6Q5 118 aa9.65□□□□□ -0.86
USHBP1-207ENST00000597928 IGLV2-11P01706 119 aa9.65□□□□□ -0.86
USHBP1-207ENST00000597928 ZC2HC1BQ5TFG8 222 aa9.65□□□□□ -0.86
USHBP1-207ENST00000597928 OR10J6PQ8NGY7 276 aa9.65□□□□□ -0.86
USHBP1-207ENST00000597928 ZNF256Q9Y2P7 627 aaPredicted RBP9.65□□□□□ -0.86
USHBP1-207ENST00000597928 A0A1W2PPR1 153 aa9.65□□□□□ -0.86
USHBP1-207ENST00000597928 TNFRSF6BO95407 300 aa9.65□□□□□ -0.86
USHBP1-207ENST00000597928 MYCNOSP40205 109 aa9.65□□□□□ -0.86
USHBP1-207ENST00000597928 AGPAT4-IT1Q9H0P7 198 aa9.65□□□□□ -0.86
USHBP1-207ENST00000597928 PRRC2AP48634 2157 aaKnown RBP9.65□□□□□ -0.86
USHBP1-207ENST00000597928 A0A087WWL8 130 aa9.65□□□□□ -0.87
USHBP1-207ENST00000597928 IGHV3-73A0A0B4J1V6 119 aa9.65□□□□□ -0.87
USHBP1-207ENST00000597928 BVES-AS1Q5T3Y7 98 aa9.65□□□□□ -0.87
USHBP1-207ENST00000597928 HIST1H4GQ99525 98 aa9.65□□□□□ -0.87
USHBP1-207ENST00000597928 PRSS22Q9GZN4 317 aa9.65□□□□□ -0.87
USHBP1-207ENST00000597928 UTP20O75691 2785 aaKnown RBP9.64□□□□□ -0.87
USHBP1-207ENST00000597928 FAM231BA6NCW3 169 aa9.64□□□□□ -0.87
USHBP1-207ENST00000597928 FSTL3O95633 263 aa9.64□□□□□ -0.87
USHBP1-207ENST00000597928 HOXB4P17483 251 aaPredicted RBP9.64□□□□□ -0.87
USHBP1-207ENST00000597928 BLCAPP62952 87 aa9.64□□□□□ -0.87
USHBP1-207ENST00000597928 PAX8Q06710 450 aa9.64□□□□□ -0.87
USHBP1-207ENST00000597928 KIR3DS1Q14943 382 aa9.64□□□□□ -0.87
USHBP1-207ENST00000597928 KLF5Q13887 457 aaPredicted RBP9.64□□□□□ -0.87
USHBP1-207ENST00000597928 ITPR1Q14643 2758 aa9.64□□□□□ -0.87
USHBP1-207ENST00000597928 IGLV11-55A0A075B6I3 123 aa9.64□□□□□ -0.87
USHBP1-207ENST00000597928 IGHV3OR16-12A0A075B7B8 117 aa9.64□□□□□ -0.87
USHBP1-207ENST00000597928 A6NDN8 102 aa9.64□□□□□ -0.87
USHBP1-207ENST00000597928 NPFFO15130 113 aa9.64□□□□□ -0.87
USHBP1-207ENST00000597928 ZNF688P0C7X2 276 aa9.64□□□□□ -0.87
USHBP1-207ENST00000597928 SRSF9Q13242 221 aaKnown RBP eCLIP9.64□□□□□ -0.87
USHBP1-207ENST00000597928 MRPS16Q9Y3D3 137 aaKnown RBP9.64□□□□□ -0.87
USHBP1-207ENST00000597928 TRAV41A0A0B4J266 112 aa9.63□□□□□ -0.87
USHBP1-207ENST00000597928 OVOL3O00110 214 aa9.63□□□□□ -0.87
USHBP1-207ENST00000597928 CRYGBP07316 175 aa9.63□□□□□ -0.87
USHBP1-207ENST00000597928 DTX2Q86UW9 622 aa9.63□□□□□ -0.87
USHBP1-207ENST00000597928 C8orf86Q6ZUL3 223 aa9.63□□□□□ -0.87
USHBP1-207ENST00000597928 Q8N9W7 124 aa9.63□□□□□ -0.87
USHBP1-207ENST00000597928 MEGF9Q9H1U4 602 aa9.63□□□□□ -0.87
USHBP1-207ENST00000597928 ANKRD17O75179 2603 aaKnown RBP9.62□□□□□ -0.87
USHBP1-207ENST00000597928 TRAV12-2A0A075B6T6 113 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 LOC107984156A0A0G2JMH3 177 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 C19orf84I3L1E1 186 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 CLEC2AQ6UVW9 174 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 ARL17AQ8IVW1 177 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 OR2K2Q8NGT1 345 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 TMEM14CQ9P0S9 112 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 GNRH2O43555 120 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 PIP4P2Q8N4L2 257 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 SCGB3A1Q96QR1 104 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 TRAV12-3A0A0B4J271 114 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 CD300EQ496F6 205 aaPredicted RBP9.62□□□□□ -0.87
USHBP1-207ENST00000597928 CCL19Q99731 98 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 GFRA4Q9GZZ7 299 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 SPCS1Q9Y6A9 102 aa9.62□□□□□ -0.87
USHBP1-207ENST00000597928 GAGE12BA1L429 117 aa9.61□□□□□ -0.87
USHBP1-207ENST00000597928 TMEM8BA6NDV4 472 aa9.61□□□□□ -0.87
USHBP1-207ENST00000597928 UNQ9165/PRO28630Q6UXU0 137 aa9.61□□□□□ -0.87
USHBP1-207ENST00000597928 COL25A1Q9BXS0 654 aaPredicted RBP9.61□□□□□ -0.87
USHBP1-207ENST00000597928 PEF1Q9UBV8 284 aaKnown RBP9.61□□□□□ -0.87
USHBP1-207ENST00000597928 MSRB2Q9Y3D2 182 aa9.61□□□□□ -0.87
USHBP1-207ENST00000597928 TNFRSF13BO14836 293 aaPredicted RBP9.61□□□□□ -0.87
USHBP1-207ENST00000597928 IGHV4-38-2P0DP08 117 aa9.61□□□□□ -0.87
USHBP1-207ENST00000597928 CT83Q5H943 113 aa9.61□□□□□ -0.87
USHBP1-207ENST00000597928 ORAOV1Q8WV07 137 aa9.61□□□□□ -0.87
USHBP1-207ENST00000597928 M0R1W7 72 aa9.6□□□□□ -0.87
USHBP1-207ENST00000597928 APOMO95445 188 aa9.6□□□□□ -0.87
USHBP1-207ENST00000597928 CD7P09564 240 aa9.6□□□□□ -0.87
USHBP1-207ENST00000597928 COTL1Q14019 142 aa9.6□□□□□ -0.87
USHBP1-207ENST00000597928 SMAD5-AS1Q9Y6J3 95 aa9.6□□□□□ -0.87
USHBP1-207ENST00000597928 ZANQ9Y493 2812 aa9.6□□□□□ -0.87
USHBP1-207ENST00000597928 SAP30O75446 220 aa9.6□□□□□ -0.87
USHBP1-207ENST00000597928 Q6AWC8 147 aa9.6□□□□□ -0.87
USHBP1-207ENST00000597928 OR11H6Q8NGC7 330 aa9.6□□□□□ -0.87
USHBP1-207ENST00000597928 CYSLTR1Q9Y271 337 aa9.6□□□□□ -0.87
USHBP1-207ENST00000597928 AGRNO00468 2067 aa9.6□□□□□ -0.87
USHBP1-207ENST00000597928 RPS20P60866 119 aaKnown RBP9.6□□□□□ -0.87
USHBP1-207ENST00000597928 MRPL35Q9NZE8 188 aaKnown RBP9.6□□□□□ -0.87
USHBP1-207ENST00000597928 GTF2H5Q6ZYL4 71 aa9.59□□□□□ -0.87
USHBP1-207ENST00000597928 RNF5Q99942 180 aa9.59□□□□□ -0.87
USHBP1-207ENST00000597928 NBL1P41271 181 aa9.59□□□□□ -0.87
USHBP1-207ENST00000597928 PLP1P60201 277 aa9.59□□□□□ -0.87
USHBP1-207ENST00000597928 ZNF56Q15929 161 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms