RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 SEC11BP0C7V7 166 aa7.87□□□□□ -1.15
VRK3-210ENST00000596121 HTN3P15516 51 aa7.87□□□□□ -1.15
VRK3-210ENST00000596121 IQCF2Q8IXL9 164 aa7.87□□□□□ -1.15
VRK3-210ENST00000596121 LINC00612Q8N6U2 182 aa7.87□□□□□ -1.15
VRK3-210ENST00000596121 CMTM2Q8TAZ6 248 aa7.87□□□□□ -1.15
VRK3-210ENST00000596121 TMED6Q8WW62 240 aa7.87□□□□□ -1.15
VRK3-210ENST00000596121 EPDR1Q9UM22 224 aa7.87□□□□□ -1.15
VRK3-210ENST00000596121 IGHV1OR15-1A0A075B7D0 117 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 KANTRA0A1W2PQU2 76 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 A0A1W2PRE2 83 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 MAP1LC3B2A6NCE7 125 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 UBE2G2P60604 165 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 ANXA2RQ3ZCQ2 193 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 FAM74A1Q5RGS3 127 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 CCDC28AQ8IWP9 274 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 EIF4E3Q8N5X7 224 aaKnown RBP7.86□□□□□ -1.15
VRK3-210ENST00000596121 C5orf17Q8NAS9 161 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 LINC00479Q96M42 142 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 MAP1LC3BQ9GZQ8 125 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 GSN-AS1Q9NRJ2 163 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 KLF12Q9Y4X4 402 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 TIMM8BQ9Y5J9 83 aaPredicted RBP7.86□□□□□ -1.15
VRK3-210ENST00000596121 DNAH10Q8IVF4 4471 aa7.86□□□□□ -1.15
VRK3-210ENST00000596121 FAM74A7A6NL05 159 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 F6UZH7 168 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 PFDN1O60925 122 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 C1QBP02746 253 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 ZNF80P51504 273 aaPredicted RBP7.85□□□□□ -1.15
VRK3-210ENST00000596121 TCTAP57738 103 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 MUC21Q5SSG8 566 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 Q6AWC8 147 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 LGALS9CQ6DKI2 356 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 Q6ZTI0 123 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 STOML3Q8TAV4 291 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 MBD3L1Q8WWY6 194 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 C8orf49Q96NF6 230 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 PSG8Q9UQ74 426 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 LENEPQ9Y5L5 61 aa7.85□□□□□ -1.15
VRK3-210ENST00000596121 DNAH6Q9C0G6 4158 aa7.84□□□□□ -1.15
VRK3-210ENST00000596121 TRAV34A0A0B4J273 112 aa7.84□□□□□ -1.15
VRK3-210ENST00000596121 CBY3A6NI87 242 aa7.84□□□□□ -1.15
VRK3-210ENST00000596121 DAZ2Q13117 558 aaKnown RBP7.84□□□□□ -1.15
VRK3-210ENST00000596121 TMEM88Q6PEY1 159 aa7.84□□□□□ -1.15
VRK3-210ENST00000596121 AKAP14Q86UN6 197 aa7.84□□□□□ -1.15
VRK3-210ENST00000596121 FAM213BQ8TBF2 198 aa7.84□□□□□ -1.15
VRK3-210ENST00000596121 MDFICQ9P1T7 246 aa7.84□□□□□ -1.15
VRK3-210ENST00000596121 C11orf21Q9P2W6 132 aa7.84□□□□□ -1.15
VRK3-210ENST00000596121 EPPK1P58107 5090 aaKnown RBP7.84□□□□□ -1.16
VRK3-210ENST00000596121 A0A1B0GV50 99 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 GAGE12BA1L429 117 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 SNURFLB1AK76 121 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 RGS13O14921 159 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 GAGE7O76087 117 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 GAGE12FP0CL80 117 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 GAGE12GP0CL81 117 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 GAGE12IP0CL82 117 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 HOXA5P20719 270 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 CCL20P78556 96 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 C9orf62Q8N4C0 152 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 SFT2D1Q8WV19 159 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 ATG101Q9BSB4 218 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 NDUFAF3Q9BU61 184 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 TREM1Q9NP99 234 aa7.83□□□□□ -1.16
VRK3-210ENST00000596121 SERTM2A0A1B0GWG4 89 aa7.82□□□□□ -1.16
VRK3-210ENST00000596121 UMAD1C9J7I0 102 aa7.82□□□□□ -1.16
VRK3-210ENST00000596121 F5H768 121 aa7.82□□□□□ -1.16
VRK3-210ENST00000596121 GNRH2O43555 120 aa7.82□□□□□ -1.16
VRK3-210ENST00000596121 SPINK4O60575 86 aa7.82□□□□□ -1.16
VRK3-210ENST00000596121 ATP5G1P05496 136 aa7.82□□□□□ -1.16
VRK3-210ENST00000596121 TPT1P13693 172 aaKnown RBP7.82□□□□□ -1.16
VRK3-210ENST00000596121 ATP5G3P48201 142 aa7.82□□□□□ -1.16
VRK3-210ENST00000596121 TCL1AP56279 114 aa7.82□□□□□ -1.16
VRK3-210ENST00000596121 FLI1Q01543 452 aaPredicted RBP7.82□□□□□ -1.16
VRK3-210ENST00000596121 PRNTQ86SH4 94 aa7.82□□□□□ -1.16
VRK3-210ENST00000596121 CYB561D1Q8N8Q1 229 aa7.82□□□□□ -1.16
VRK3-210ENST00000596121 ZNF680Q8NEM1 530 aa7.82□□□□□ -1.16
VRK3-210ENST00000596121 DNAH2Q9P225 4427 aa7.81□□□□□ -1.16
VRK3-210ENST00000596121 PEX7O00628 323 aa7.81□□□□□ -1.16
VRK3-210ENST00000596121 PAGE4O60829 102 aa7.81□□□□□ -1.16
VRK3-210ENST00000596121 IFNA7P01567 189 aa7.81□□□□□ -1.16
VRK3-210ENST00000596121 EIF5AP63241 154 aaKnown RBP7.81□□□□□ -1.16
VRK3-210ENST00000596121 TMEM183BQ1AE95 376 aa7.81□□□□□ -1.16
VRK3-210ENST00000596121 TDRG1Q3Y452 100 aa7.81□□□□□ -1.16
VRK3-210ENST00000596121 IBA57Q5T440 356 aaKnown RBP7.81□□□□□ -1.16
VRK3-210ENST00000596121 TMEM183AQ8IXX5 376 aa7.81□□□□□ -1.16
VRK3-210ENST00000596121 TMEM75Q8N9X5 138 aa7.81□□□□□ -1.16
VRK3-210ENST00000596121 FAM210BQ96KR6 192 aa7.81□□□□□ -1.16
VRK3-210ENST00000596121 MRPL16Q9NX20 251 aaKnown RBP7.81□□□□□ -1.16
VRK3-210ENST00000596121 TRGV1A0A0A0MS02 117 aa7.8□□□□□ -1.16
VRK3-210ENST00000596121 GCGP01275 180 aa7.8□□□□□ -1.16
VRK3-210ENST00000596121 H2AFB1P0C5Y9 115 aa7.8□□□□□ -1.16
VRK3-210ENST00000596121 CRIP1P50238 77 aa7.8□□□□□ -1.16
VRK3-210ENST00000596121 CST9LP1Q5W188 147 aa7.8□□□□□ -1.16
VRK3-210ENST00000596121 DPPA3Q6W0C5 159 aa7.8□□□□□ -1.16
VRK3-210ENST00000596121 NAGKQ9UJ70 344 aa7.8□□□□□ -1.16
VRK3-210ENST00000596121 MUC4Q99102 2169 aa7.79□□□□□ -1.16
VRK3-210ENST00000596121 TRAV21A0A0B4J279 112 aa7.79□□□□□ -1.16
VRK3-210ENST00000596121 IGHV3-16A0A0C4DH30 117 aa7.79□□□□□ -1.16
VRK3-210ENST00000596121 K7EQM0 130 aa7.79□□□□□ -1.16
VRK3-210ENST00000596121 TYMSP04818 313 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms