RNA–Protein interactions for RNA: ENST00000590574.5

SMARCA4-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,282 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-215ENST00000590574 DEFB125Q8N687 156 aa13.41□□□□□ -0.26
SMARCA4-215ENST00000590574 SIGMAR1Q99720 223 aa13.41□□□□□ -0.26
SMARCA4-215ENST00000590574 MRPL35Q9NZE8 188 aaKnown RBP13.41□□□□□ -0.26
SMARCA4-215ENST00000590574 LCNL1Q6ZST4 164 aa13.41□□□□□ -0.26
SMARCA4-215ENST00000590574 DAZ1Q9NQZ3 744 aaKnown RBP13.41□□□□□ -0.26
SMARCA4-215ENST00000590574 TNRC6AQ8NDV7 1962 aaKnown RBP13.4□□□□□ -0.26
SMARCA4-215ENST00000590574 CD28P10747 220 aa13.4□□□□□ -0.26
SMARCA4-215ENST00000590574 PRSS22Q9GZN4 317 aa13.4□□□□□ -0.26
SMARCA4-215ENST00000590574 WI2-2373I1.2A0A1W2PRP0 233 aa13.4□□□□□ -0.26
SMARCA4-215ENST00000590574 LINC01549A6NIU2 74 aa13.4□□□□□ -0.26
SMARCA4-215ENST00000590574 ABCA4P78363 2273 aa13.4□□□□□ -0.26
SMARCA4-215ENST00000590574 TRGV11A0A075B6L2 103 aa13.4□□□□□ -0.26
SMARCA4-215ENST00000590574 C1orf159Q96HA4 380 aa13.4□□□□□ -0.26
SMARCA4-215ENST00000590574 AGPAT4-IT1Q9H0P7 198 aa13.4□□□□□ -0.26
SMARCA4-215ENST00000590574 IGHV3-73A0A0B4J1V6 119 aa13.4□□□□□ -0.27
SMARCA4-215ENST00000590574 C2orf70A6NJV1 201 aa13.4□□□□□ -0.27
SMARCA4-215ENST00000590574 GATA1P15976 413 aaPredicted RBP13.4□□□□□ -0.27
SMARCA4-215ENST00000590574 HTTP42858 3142 aa13.39□□□□□ -0.27
SMARCA4-215ENST00000590574 PCP2Q8IVA1 136 aa13.39□□□□□ -0.27
SMARCA4-215ENST00000590574 MSRB1Q9NZV6 116 aa13.39□□□□□ -0.27
SMARCA4-215ENST00000590574 C2orf66Q6UXQ4 117 aa13.39□□□□□ -0.27
SMARCA4-215ENST00000590574 K7EP34 96 aa13.39□□□□□ -0.27
SMARCA4-215ENST00000590574 CRXO43186 299 aaPredicted RBP13.39□□□□□ -0.27
SMARCA4-215ENST00000590574 CTSGP08311 255 aa13.39□□□□□ -0.27
SMARCA4-215ENST00000590574 IGHV7-81A0A0B4J1V7 117 aa13.39□□□□□ -0.27
SMARCA4-215ENST00000590574 IGKV3OR2-268A0A0C4DH90 116 aa13.39□□□□□ -0.27
SMARCA4-215ENST00000590574 ANXA2RQ3ZCQ2 193 aa13.39□□□□□ -0.27
SMARCA4-215ENST00000590574 IGHV1-69DA0A0B4J2H0 117 aa13.38□□□□□ -0.27
SMARCA4-215ENST00000590574 IGHV1-69P01742 117 aa13.38□□□□□ -0.27
SMARCA4-215ENST00000590574 ADAMTSL5Q6ZMM2 481 aa13.38□□□□□ -0.27
SMARCA4-215ENST00000590574 PGPEP1Q9NXJ5 209 aa13.38□□□□□ -0.27
SMARCA4-215ENST00000590574 A0A1B0GV72 72 aa13.38□□□□□ -0.27
SMARCA4-215ENST00000590574 ANKRD39Q53RE8 183 aa13.38□□□□□ -0.27
SMARCA4-215ENST00000590574 MBD6Q96DN6 1003 aa13.38□□□□□ -0.27
SMARCA4-215ENST00000590574 C1orf122Q6ZSJ8 110 aa13.38□□□□□ -0.27
SMARCA4-215ENST00000590574 IGKV3D-20A0A0C4DH25 116 aa13.38□□□□□ -0.27
SMARCA4-215ENST00000590574 FOXE3Q13461 319 aa13.38□□□□□ -0.27
SMARCA4-215ENST00000590574 IGHV4-39P01824 125 aa13.37□□□□□ -0.27
SMARCA4-215ENST00000590574 PAX2Q02962 417 aa13.37□□□□□ -0.27
SMARCA4-215ENST00000590574 ZNF876PQ49A33 203 aa13.37□□□□□ -0.27
SMARCA4-215ENST00000590574 K7ERJ3 54 aa13.37□□□□□ -0.27
SMARCA4-215ENST00000590574 SIVA1O15304 175 aa13.37□□□□□ -0.27
SMARCA4-215ENST00000590574 PEMTQ9UBM1 199 aa13.37□□□□□ -0.27
SMARCA4-215ENST00000590574 K7EP13 123 aa13.36□□□□□ -0.27
SMARCA4-215ENST00000590574 TP53TG1Q9Y2A0 90 aa13.36□□□□□ -0.27
SMARCA4-215ENST00000590574 TNCP24821 2201 aa13.36□□□□□ -0.27
SMARCA4-215ENST00000590574 A0A1W2PPM0 123 aa13.36□□□□□ -0.27
SMARCA4-215ENST00000590574 ZFHX2Q9C0A1 2572 aaPredicted RBP13.36□□□□□ -0.27
SMARCA4-215ENST00000590574 B4DSR2 109 aa13.36□□□□□ -0.27
SMARCA4-215ENST00000590574 NEGR1Q7Z3B1 354 aa13.36□□□□□ -0.27
SMARCA4-215ENST00000590574 MLST8Q9BVC4 326 aa13.36□□□□□ -0.27
SMARCA4-215ENST00000590574 SMIM2Q9BVW6 85 aa13.36□□□□□ -0.27
SMARCA4-215ENST00000590574 KIAA1549Q9HCM3 1950 aa13.36□□□□□ -0.27
SMARCA4-215ENST00000590574 TCF15Q12870 199 aa13.35□□□□□ -0.27
SMARCA4-215ENST00000590574 NDUFA4O00483 81 aa13.35□□□□□ -0.27
SMARCA4-215ENST00000590574 SP5Q6BEB4 398 aaPredicted RBP13.35□□□□□ -0.27
SMARCA4-215ENST00000590574 RBAKDNA6NC62 111 aa13.35□□□□□ -0.27
SMARCA4-215ENST00000590574 COPS9Q8WXC6 57 aa13.35□□□□□ -0.27
SMARCA4-215ENST00000590574 RNF114Q9Y508 228 aa13.35□□□□□ -0.27
SMARCA4-215ENST00000590574 TRBV6-1A0A0K0K1D8 114 aa13.34□□□□□ -0.27
SMARCA4-215ENST00000590574 HCFC1P51610 2035 aa13.34□□□□□ -0.27
SMARCA4-215ENST00000590574 MYMXA0A1B0GTQ4 84 aa13.34□□□□□ -0.27
SMARCA4-215ENST00000590574 A0A1W2PRX2 142 aa13.34□□□□□ -0.27
SMARCA4-215ENST00000590574 CEND1Q8N111 149 aa13.34□□□□□ -0.27
SMARCA4-215ENST00000590574 A8MWV9 139 aa13.33□□□□□ -0.27
SMARCA4-215ENST00000590574 PRAC2D3DTV9 90 aa13.33□□□□□ -0.27
SMARCA4-215ENST00000590574 SPRY2O43597 315 aa13.33□□□□□ -0.27
SMARCA4-215ENST00000590574 Q8NA96 180 aa13.33□□□□□ -0.27
SMARCA4-215ENST00000590574 GTSF1LQ9H1H1 148 aa13.33□□□□□ -0.27
SMARCA4-215ENST00000590574 SLC25A16P16260 332 aa13.33□□□□□ -0.28
SMARCA4-215ENST00000590574 TTC32Q5I0X7 151 aa13.33□□□□□ -0.28
SMARCA4-215ENST00000590574 DLX4Q92988 240 aaPredicted RBP13.33□□□□□ -0.28
SMARCA4-215ENST00000590574 MED13LQ71F56 2210 aa13.33□□□□□ -0.28
SMARCA4-215ENST00000590574 COL4A2P08572 1712 aa13.33□□□□□ -0.28
SMARCA4-215ENST00000590574 NBL1P41271 181 aa13.33□□□□□ -0.28
SMARCA4-215ENST00000590574 TTC28Q96AY4 2481 aa13.33□□□□□ -0.28
SMARCA4-215ENST00000590574 TRAV8-2A0A0B4J237 113 aa13.33□□□□□ -0.28
SMARCA4-215ENST00000590574 TAX1BP3O14907 124 aa13.32□□□□□ -0.28
SMARCA4-215ENST00000590574 PIP4P2Q8N4L2 257 aa13.32□□□□□ -0.28
SMARCA4-215ENST00000590574 ERG28Q9UKR5 140 aa13.32□□□□□ -0.28
SMARCA4-215ENST00000590574 A0A087WX48 190 aa13.32□□□□□ -0.28
SMARCA4-215ENST00000590574 F8VRH5 84 aa13.32□□□□□ -0.28
SMARCA4-215ENST00000590574 HLA-DRB4P13762 266 aa13.32□□□□□ -0.28
SMARCA4-215ENST00000590574 CTRLP40313 264 aa13.32□□□□□ -0.28
SMARCA4-215ENST00000590574 Q8N9W7 124 aa13.32□□□□□ -0.28
SMARCA4-215ENST00000590574 RNASE8Q8TDE3 154 aaKnown RBP13.32□□□□□ -0.28
SMARCA4-215ENST00000590574 HLA-DRB4X5D2U9 266 aa13.32□□□□□ -0.28
SMARCA4-215ENST00000590574 F6UB75 175 aa13.31□□□□□ -0.28
SMARCA4-215ENST00000590574 BUB3O43684 328 aa13.31□□□□□ -0.28
SMARCA4-215ENST00000590574 SYNJ2BPP57105 145 aa13.31□□□□□ -0.28
SMARCA4-215ENST00000590574 MTURNQ8N3F0 131 aa13.31□□□□□ -0.28
SMARCA4-215ENST00000590574 FANCD2OSQ96PS1 177 aa13.31□□□□□ -0.28
SMARCA4-215ENST00000590574 TP73-AS1Q9UF72 201 aa13.31□□□□□ -0.28
SMARCA4-215ENST00000590574 CENPVL3A0A0U1RRI6 287 aa13.31□□□□□ -0.28
SMARCA4-215ENST00000590574 TMEM238C9JI98 176 aa13.31□□□□□ -0.28
SMARCA4-215ENST00000590574 MSMBP08118 114 aa13.31□□□□□ -0.28
SMARCA4-215ENST00000590574 TMEM101Q96IK0 257 aa13.31□□□□□ -0.28
SMARCA4-215ENST00000590574 MYCNOSP40205 109 aa13.3□□□□□ -0.28
SMARCA4-215ENST00000590574 KLK9Q9UKQ9 250 aa13.3□□□□□ -0.28
SMARCA4-215ENST00000590574 PRADC1Q9BSG0 188 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 172.9 ms