RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 NUDT11Q96G61 164 aa18.5■□□□□ 0.55
SHMT1-207ENST00000580002 SFRP2Q96HF1 295 aa18.5■□□□□ 0.55
SHMT1-207ENST00000580002 DUSP14O95147 198 aaKnown RBP18.49■□□□□ 0.55
SHMT1-207ENST00000580002 BTN1A1Q13410 526 aa18.49■□□□□ 0.55
SHMT1-207ENST00000580002 COX8CQ7Z4L0 72 aa18.49■□□□□ 0.55
SHMT1-207ENST00000580002 NDFIP1Q9BT67 221 aa18.49■□□□□ 0.55
SHMT1-207ENST00000580002 C19orf71A6NCJ1 209 aa18.48■□□□□ 0.55
SHMT1-207ENST00000580002 ERVFC1-1P60608 527 aa18.48■□□□□ 0.55
SHMT1-207ENST00000580002 SMUG1Q53HV7 270 aa18.48■□□□□ 0.55
SHMT1-207ENST00000580002 SMIM12Q96EX1 92 aa18.48■□□□□ 0.55
SHMT1-207ENST00000580002 DNAH3Q8TD57 4116 aa18.48■□□□□ 0.55
SHMT1-207ENST00000580002 A8MTW9 85 aa18.47■□□□□ 0.55
SHMT1-207ENST00000580002 SH2D1AO60880 128 aa18.47■□□□□ 0.55
SHMT1-207ENST00000580002 RNASE4P34096 147 aaKnown RBP18.47■□□□□ 0.55
SHMT1-207ENST00000580002 CA1P00915 261 aaPredicted RBP18.47■□□□□ 0.55
SHMT1-207ENST00000580002 RPL19P84098 196 aaKnown RBP18.47■□□□□ 0.55
SHMT1-207ENST00000580002 C11orf21Q9P2W6 132 aa18.47■□□□□ 0.55
SHMT1-207ENST00000580002 CRISP2P16562 243 aa18.46■□□□□ 0.55
SHMT1-207ENST00000580002 IBA57Q5T440 356 aaKnown RBP18.46■□□□□ 0.55
SHMT1-207ENST00000580002 TRPT1Q86TN4 253 aaKnown RBP18.46■□□□□ 0.55
SHMT1-207ENST00000580002 GTSCR1Q86UQ5 136 aa18.46■□□□□ 0.55
SHMT1-207ENST00000580002 STHQ8IWL8 128 aa18.46■□□□□ 0.55
SHMT1-207ENST00000580002 FAM110AQ9BQ89 295 aa18.46■□□□□ 0.55
SHMT1-207ENST00000580002 GPX1P07203 203 aa18.45■□□□□ 0.54
SHMT1-207ENST00000580002 RPL35AP18077 110 aaKnown RBP18.45■□□□□ 0.54
SHMT1-207ENST00000580002 CMC4P56277 68 aaPredicted RBP18.45■□□□□ 0.54
SHMT1-207ENST00000580002 RHEBQ15382 184 aa18.45■□□□□ 0.54
SHMT1-207ENST00000580002 TMEM88Q6PEY1 159 aa18.45■□□□□ 0.54
SHMT1-207ENST00000580002 OR10G8Q8NGN5 311 aa18.45■□□□□ 0.54
SHMT1-207ENST00000580002 LENEPQ9Y5L5 61 aa18.45■□□□□ 0.54
SHMT1-207ENST00000580002 KLLNB2CW77 178 aa18.45■□□□□ 0.54
SHMT1-207ENST00000580002 CBLN2Q8IUK8 224 aa18.45■□□□□ 0.54
SHMT1-207ENST00000580002 V9GYV3 84 aa18.45■□□□□ 0.54
SHMT1-207ENST00000580002 ZNF575Q86XF7 245 aa18.44■□□□□ 0.54
SHMT1-207ENST00000580002 OSTCQ9NRP0 149 aa18.44■□□□□ 0.54
SHMT1-207ENST00000580002 NOTCH1P46531 2555 aa18.44■□□□□ 0.54
SHMT1-207ENST00000580002 MGAM2Q2M2H8 2515 aa18.44■□□□□ 0.54
SHMT1-207ENST00000580002 B4DEV8 164 aa18.43■□□□□ 0.54
SHMT1-207ENST00000580002 CRXO43186 299 aaPredicted RBP18.43■□□□□ 0.54
SHMT1-207ENST00000580002 FAM162BQ5T6X4 162 aa18.43■□□□□ 0.54
SHMT1-207ENST00000580002 GFI1BQ5VTD9 330 aa18.43■□□□□ 0.54
SHMT1-207ENST00000580002 MT-ND4LP03901 98 aa18.42■□□□□ 0.54
SHMT1-207ENST00000580002 RBMY1A1P0DJD3 496 aaKnown RBP18.42■□□□□ 0.54
SHMT1-207ENST00000580002 RBMY1CP0DJD4 496 aa18.42■□□□□ 0.54
SHMT1-207ENST00000580002 EGFEM1PQ0D2K5 195 aa18.42■□□□□ 0.54
SHMT1-207ENST00000580002 RBMY1FQ15415 496 aaKnown RBP18.42■□□□□ 0.54
SHMT1-207ENST00000580002 SAMD5Q5TGI4 173 aa18.42■□□□□ 0.54
SHMT1-207ENST00000580002 TMSB15BA0A087X1C1 80 aa18.42■□□□□ 0.54
SHMT1-207ENST00000580002 TRAV12-3A0A0B4J271 114 aa18.42■□□□□ 0.54
SHMT1-207ENST00000580002 GZMBP10144 247 aa18.42■□□□□ 0.54
SHMT1-207ENST00000580002 LEPP41159 167 aa18.42■□□□□ 0.54
SHMT1-207ENST00000580002 CDKN1BP46527 198 aa18.42■□□□□ 0.54
SHMT1-207ENST00000580002 FAM231DQ6ZW35 169 aa18.42■□□□□ 0.54
SHMT1-207ENST00000580002 ODF3Q96PU9 254 aa18.42■□□□□ 0.54
SHMT1-207ENST00000580002 ZNF705GA8MUZ8 300 aaPredicted RBP18.41■□□□□ 0.54
SHMT1-207ENST00000580002 DAZAP1Q96EP5 407 aaKnown RBP18.41■□□□□ 0.54
SHMT1-207ENST00000580002 FABP5P3A8MUU1 101 aa18.4■□□□□ 0.54
SHMT1-207ENST00000580002 GATCO43716 136 aaKnown RBP18.4■□□□□ 0.54
SHMT1-207ENST00000580002 P01737 135 aa18.4■□□□□ 0.54
SHMT1-207ENST00000580002 PFN1P07737 140 aaKnown RBP18.4■□□□□ 0.54
SHMT1-207ENST00000580002 GIG44P09565 113 aaPredicted RBP18.4■□□□□ 0.54
SHMT1-207ENST00000580002 SRD5A3Q9H8P0 318 aa18.4■□□□□ 0.54
SHMT1-207ENST00000580002 TRBV7-9A0A0J9YWB2 115 aa18.4■□□□□ 0.54
SHMT1-207ENST00000580002 H7BYZ3 331 aa18.4■□□□□ 0.54
SHMT1-207ENST00000580002 XCL2Q9UBD3 114 aa18.4■□□□□ 0.54
SHMT1-207ENST00000580002 A0A087WWC5 75 aa18.39■□□□□ 0.53
SHMT1-207ENST00000580002 ZNF324O75467 553 aaPredicted RBP18.39■□□□□ 0.53
SHMT1-207ENST00000580002 MUC21Q5SSG8 566 aa18.39■□□□□ 0.53
SHMT1-207ENST00000580002 C15orf54Q8N8G6 183 aa18.39■□□□□ 0.53
SHMT1-207ENST00000580002 OR2D3Q8NGH3 330 aa18.39■□□□□ 0.53
SHMT1-207ENST00000580002 NBEAL1Q6ZS30 2694 aa18.38■□□□□ 0.53
SHMT1-207ENST00000580002 IGKV3D-20A0A0C4DH25 116 aa18.38■□□□□ 0.53
SHMT1-207ENST00000580002 C7orf71A4D174 169 aa18.38■□□□□ 0.53
SHMT1-207ENST00000580002 PRM2P04554 102 aa18.38■□□□□ 0.53
SHMT1-207ENST00000580002 Q6AWC8 147 aa18.38■□□□□ 0.53
SHMT1-207ENST00000580002 ANAPC16Q96DE5 110 aa18.38■□□□□ 0.53
SHMT1-207ENST00000580002 BIN3Q9NQY0 253 aa18.38■□□□□ 0.53
SHMT1-207ENST00000580002 URGCP-MRPS24S4R325 110 aa18.38■□□□□ 0.53
SHMT1-207ENST00000580002 ORM1P02763 201 aa18.37■□□□□ 0.53
SHMT1-207ENST00000580002 PRB2P02812 416 aaPredicted RBP18.37■□□□□ 0.53
SHMT1-207ENST00000580002 CLUHP3Q96NS8 147 aa18.37■□□□□ 0.53
SHMT1-207ENST00000580002 RPP21Q9H633 154 aaKnown RBP18.37■□□□□ 0.53
SHMT1-207ENST00000580002 TSPOP30536 169 aa18.37■□□□□ 0.53
SHMT1-207ENST00000580002 TCL1AP56279 114 aa18.37■□□□□ 0.53
SHMT1-207ENST00000580002 FAM3BP58499 235 aaPredicted RBP18.37■□□□□ 0.53
SHMT1-207ENST00000580002 NAGKQ9UJ70 344 aa18.37■□□□□ 0.53
SHMT1-207ENST00000580002 GRIFINA4D1Z8 144 aa18.36■□□□□ 0.53
SHMT1-207ENST00000580002 CTDSP1Q9GZU7 261 aa18.36■□□□□ 0.53
SHMT1-207ENST00000580002 TRAV21A0A0B4J279 112 aa18.35■□□□□ 0.53
SHMT1-207ENST00000580002 ANXA2RQ3ZCQ2 193 aa18.35■□□□□ 0.53
SHMT1-207ENST00000580002 TMEM189A5PLL7 270 aa18.34■□□□□ 0.53
SHMT1-207ENST00000580002 PPP1R2P9O14990 202 aa18.34■□□□□ 0.53
SHMT1-207ENST00000580002 GTSF1Q8WW33 167 aa18.34■□□□□ 0.53
SHMT1-207ENST00000580002 TMEM242Q9NWH2 141 aa18.33■□□□□ 0.53
SHMT1-207ENST00000580002 TP53TG3Q9ULZ0 132 aa18.33■□□□□ 0.53
SHMT1-207ENST00000580002 GNRH2O43555 120 aa18.32■□□□□ 0.52
SHMT1-207ENST00000580002 IGHV4-30-4P0DP06 118 aa18.32■□□□□ 0.52
SHMT1-207ENST00000580002 KRTAP21-3Q3LHN1 58 aa18.32■□□□□ 0.52
SHMT1-207ENST00000580002 IL36BQ9NZH7 164 aa18.32■□□□□ 0.52
SHMT1-207ENST00000580002 SPRY2O43597 315 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms