RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ABCA2Q9BZC7 2435 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 IGHV4-30-2A0A087WSY4 118 aa7.73□□□□□ -1.17
VPS53-220ENST00000576149 TSPOP30536 169 aa7.73□□□□□ -1.17
VPS53-220ENST00000576149 IFI27P40305 119 aaPredicted RBP7.73□□□□□ -1.17
VPS53-220ENST00000576149 BATFQ16520 125 aa7.73□□□□□ -1.17
VPS53-220ENST00000576149 C8orf86Q6ZUL3 223 aa7.73□□□□□ -1.17
VPS53-220ENST00000576149 IL17RELQ6ZVW7 336 aa7.73□□□□□ -1.17
VPS53-220ENST00000576149 PRELID3AQ96N28 172 aa7.73□□□□□ -1.17
VPS53-220ENST00000576149 CNFNQ9BYD5 112 aa7.73□□□□□ -1.17
VPS53-220ENST00000576149 MRPS16Q9Y3D3 137 aaKnown RBP7.73□□□□□ -1.17
VPS53-220ENST00000576149 OR10AG1Q8NH19 301 aa7.73□□□□□ -1.17
VPS53-220ENST00000576149 ZNF747Q9BV97 191 aa7.73□□□□□ -1.17
VPS53-220ENST00000576149 TMEM191AQ9H0A3 160 aa7.73□□□□□ -1.17
VPS53-220ENST00000576149 SIGLEC8Q9NYZ4 499 aa7.73□□□□□ -1.17
VPS53-220ENST00000576149 LAMTOR2Q9Y2Q5 125 aa7.73□□□□□ -1.17
VPS53-220ENST00000576149 A6NDX4 124 aa7.72□□□□□ -1.17
VPS53-220ENST00000576149 NPSP0C0P6 89 aa7.72□□□□□ -1.17
VPS53-220ENST00000576149 PPIFP30405 207 aaKnown RBP7.72□□□□□ -1.17
VPS53-220ENST00000576149 FAM106AQ4KMX7 169 aa7.72□□□□□ -1.17
VPS53-220ENST00000576149 COL5A1-AS1Q5SY13 56 aa7.72□□□□□ -1.17
VPS53-220ENST00000576149 ST20Q9HBF5 79 aa7.72□□□□□ -1.17
VPS53-220ENST00000576149 LOC389332A0A1B0GUA5 103 aa7.72□□□□□ -1.17
VPS53-220ENST00000576149 CBY3A6NI87 242 aa7.72□□□□□ -1.17
VPS53-220ENST00000576149 SIVA1O15304 175 aa7.72□□□□□ -1.17
VPS53-220ENST00000576149 IGHG2P01859 326 aa7.72□□□□□ -1.17
VPS53-220ENST00000576149 ZNF25P17030 456 aaPredicted RBP7.72□□□□□ -1.17
VPS53-220ENST00000576149 LY6EQ16553 131 aa7.72□□□□□ -1.17
VPS53-220ENST00000576149 SMPXQ9UHP9 88 aa7.72□□□□□ -1.17
VPS53-220ENST00000576149 ZFHX3Q15911 3703 aa7.72□□□□□ -1.17
VPS53-220ENST00000576149 PKD1L2Q7Z442 2459 aa7.71□□□□□ -1.17
VPS53-220ENST00000576149 A0A096LNJ9 63 aa7.71□□□□□ -1.17
VPS53-220ENST00000576149 TMEM8BA6NDV4 472 aa7.71□□□□□ -1.17
VPS53-220ENST00000576149 MSMBP08118 114 aa7.71□□□□□ -1.17
VPS53-220ENST00000576149 CKS2P33552 79 aa7.71□□□□□ -1.17
VPS53-220ENST00000576149 HIST1H1AQ02539 215 aaPredicted RBP7.71□□□□□ -1.17
VPS53-220ENST00000576149 LOXL1Q08397 574 aaPredicted RBP7.71□□□□□ -1.17
VPS53-220ENST00000576149 TMEM78Q5T7P6 136 aa7.71□□□□□ -1.17
VPS53-220ENST00000576149 LINC01545Q5VT33 79 aa7.71□□□□□ -1.17
VPS53-220ENST00000576149 C9orf47Q6ZRZ4 202 aa7.71□□□□□ -1.17
VPS53-220ENST00000576149 MSRB1Q9NZV6 116 aa7.71□□□□□ -1.17
VPS53-220ENST00000576149 CACNA1BQ00975 2339 aa7.71□□□□□ -1.17
VPS53-220ENST00000576149 IGKV3D-20A0A0C4DH25 116 aa7.71□□□□□ -1.18
VPS53-220ENST00000576149 hDV102S1A0JD36 115 aa7.71□□□□□ -1.18
VPS53-220ENST00000576149 H3BUA1 57 aa7.71□□□□□ -1.18
VPS53-220ENST00000576149 H3BUX3 64 aa7.71□□□□□ -1.18
VPS53-220ENST00000576149 TRBV12-3P01733 135 aa7.71□□□□□ -1.18
VPS53-220ENST00000576149 RNF185Q96GF1 192 aa7.71□□□□□ -1.18
VPS53-220ENST00000576149 TIMM8BQ9Y5J9 83 aaPredicted RBP7.71□□□□□ -1.18
VPS53-220ENST00000576149 M0QXV9 152 aa7.7□□□□□ -1.18
VPS53-220ENST00000576149 NDUFA4O00483 81 aa7.7□□□□□ -1.18
VPS53-220ENST00000576149 NPYP01303 97 aa7.7□□□□□ -1.18
VPS53-220ENST00000576149 UNQ9165/PRO28630Q6UXU0 137 aa7.7□□□□□ -1.18
VPS53-220ENST00000576149 STPG4Q8N801 248 aa7.7□□□□□ -1.18
VPS53-220ENST00000576149 USMG5Q96IX5 58 aa7.7□□□□□ -1.18
VPS53-220ENST00000576149 C16orf92Q96LL3 132 aa7.7□□□□□ -1.18
VPS53-220ENST00000576149 MCRIP2Q9BUT9 160 aaKnown RBP7.7□□□□□ -1.18
VPS53-220ENST00000576149 C11orf21Q9P2W6 132 aa7.7□□□□□ -1.18
VPS53-220ENST00000576149 A0A1W2PRX2 142 aa7.7□□□□□ -1.18
VPS53-220ENST00000576149 SMKR1H3BMG3 65 aa7.7□□□□□ -1.18
VPS53-220ENST00000576149 VPS13CQ709C8 3753 aa7.7□□□□□ -1.18
VPS53-220ENST00000576149 TFPI2P48307 235 aa7.69□□□□□ -1.18
VPS53-220ENST00000576149 CRYBA4P53673 196 aa7.69□□□□□ -1.18
VPS53-220ENST00000576149 TIRAPP58753 221 aa7.69□□□□□ -1.18
VPS53-220ENST00000576149 BLCAPP62952 87 aa7.69□□□□□ -1.18
VPS53-220ENST00000576149 C9orf139Q6ZV77 190 aa7.69□□□□□ -1.18
VPS53-220ENST00000576149 TMEM208Q9BTX3 173 aa7.69□□□□□ -1.18
VPS53-220ENST00000576149 B4DSR2 109 aa7.69□□□□□ -1.18
VPS53-220ENST00000576149 TCF21O43680 179 aa7.69□□□□□ -1.18
VPS53-220ENST00000576149 NCR2O95944 276 aa7.69□□□□□ -1.18
VPS53-220ENST00000576149 GPHB5Q86YW7 130 aa7.69□□□□□ -1.18
VPS53-220ENST00000576149 KLK15Q9H2R5 256 aa7.69□□□□□ -1.18
VPS53-220ENST00000576149 TRBV7-9A0A0J9YWB2 115 aa7.68□□□□□ -1.18
VPS53-220ENST00000576149 AVPP01185 164 aa7.68□□□□□ -1.18
VPS53-220ENST00000576149 HBDP02042 147 aa7.68□□□□□ -1.18
VPS53-220ENST00000576149 HINT1P49773 126 aaPredicted RBP7.68□□□□□ -1.18
VPS53-220ENST00000576149 Q6ZS46 218 aa7.68□□□□□ -1.18
VPS53-220ENST00000576149 C20orf173Q96LM9 149 aa7.68□□□□□ -1.18
VPS53-220ENST00000576149 PMCHL2Q9BQD1 86 aa7.68□□□□□ -1.18
VPS53-220ENST00000576149 MS4A6AQ9H2W1 248 aa7.68□□□□□ -1.18
VPS53-220ENST00000576149 LENEPQ9Y5L5 61 aa7.68□□□□□ -1.18
VPS53-220ENST00000576149 IGLV1-40P01703 118 aa7.68□□□□□ -1.18
VPS53-220ENST00000576149 IGHV3-11P01762 117 aa7.68□□□□□ -1.18
VPS53-220ENST00000576149 SCRT2Q9NQ03 307 aa7.68□□□□□ -1.18
VPS53-220ENST00000576149 IGHV7-4-1A0A0J9YVY3 117 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 SOCS3O14543 225 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 FOXE3Q13461 319 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 SLC25A34Q6PIV7 304 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 OR4X2Q8NGF9 303 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 OR8A1Q8NGG7 326 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 DUX5Q96PT3 197 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 NPFFR1Q9GZQ6 430 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 MAP1LC3AQ9H492 121 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 TSSC4Q9Y5U2 329 aaPredicted RBP7.67□□□□□ -1.18
VPS53-220ENST00000576149 CACNA1AO00555 2505 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 PIEZO1Q92508 2521 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 LINC01546A6NGU7 62 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 GAS8-AS1O95177 125 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 DSCR9P59020 149 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 CFHR3Q02985 330 aa7.67□□□□□ -1.18
VPS53-220ENST00000576149 Q6ZQT7 251 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms