RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 RTBDNQ9BSG5 229 aaPredicted RBP9.93□□□□□ -0.82
VPS53-218ENST00000575207 KRTAP3-3Q9BYR6 98 aa9.93□□□□□ -0.82
VPS53-218ENST00000575207 KRTAP3-2Q9BYR7 98 aa9.93□□□□□ -0.82
VPS53-218ENST00000575207 IGHV3-73A0A0B4J1V6 119 aa9.92□□□□□ -0.82
VPS53-218ENST00000575207 C5orf51A6NDU8 294 aa9.92□□□□□ -0.82
VPS53-218ENST00000575207 CIDEAO60543 219 aa9.92□□□□□ -0.82
VPS53-218ENST00000575207 VAMP1P23763 118 aa9.92□□□□□ -0.82
VPS53-218ENST00000575207 CACNG7P62955 275 aa9.92□□□□□ -0.82
VPS53-218ENST00000575207 SCGB2B2Q4G0G5 96 aa9.92□□□□□ -0.82
VPS53-218ENST00000575207 PXDC1Q5TGL8 231 aa9.92□□□□□ -0.82
VPS53-218ENST00000575207 SNX29P2Q8IUI4 249 aa9.92□□□□□ -0.82
VPS53-218ENST00000575207 PRR13Q9NZ81 148 aa9.92□□□□□ -0.82
VPS53-218ENST00000575207 CD3DP04234 171 aa9.91□□□□□ -0.82
VPS53-218ENST00000575207 FAM159AQ6UWV7 190 aa9.91□□□□□ -0.82
VPS53-218ENST00000575207 ZNF546Q86UE3 836 aa9.91□□□□□ -0.82
VPS53-218ENST00000575207 PRR26Q8N8Z3 221 aa9.91□□□□□ -0.82
VPS53-218ENST00000575207 CHCHD7Q9BUK0 85 aa9.91□□□□□ -0.82
VPS53-218ENST00000575207 A0A0B4J2A0 478 aa9.9□□□□□ -0.82
VPS53-218ENST00000575207 PGPA6NDG6 321 aa9.9□□□□□ -0.82
VPS53-218ENST00000575207 LINC00694P0DN24 101 aa9.9□□□□□ -0.82
VPS53-218ENST00000575207 MGST1P10620 155 aaKnown RBP9.9□□□□□ -0.82
VPS53-218ENST00000575207 LYZL2Q7Z4W2 148 aa9.9□□□□□ -0.82
VPS53-218ENST00000575207 OR51S1Q8NGJ8 323 aa9.9□□□□□ -0.82
VPS53-218ENST00000575207 ZNF492Q9P255 531 aa9.9□□□□□ -0.82
VPS53-218ENST00000575207 SHPKQ9UHJ6 478 aa9.9□□□□□ -0.82
VPS53-218ENST00000575207 IGKV2-40A0A087WW87 121 aaPredicted RBP9.89□□□□□ -0.83
VPS53-218ENST00000575207 GAGE12JA6NER3 117 aa9.89□□□□□ -0.83
VPS53-218ENST00000575207 IGKV2D-40P01614 121 aaPredicted RBP9.89□□□□□ -0.83
VPS53-218ENST00000575207 CRPP02741 224 aa9.89□□□□□ -0.83
VPS53-218ENST00000575207 HIST1H1EP10412 219 aaKnown RBP9.89□□□□□ -0.83
VPS53-218ENST00000575207 GAGE1Q13065 139 aa9.89□□□□□ -0.83
VPS53-218ENST00000575207 GAGE4Q13068 117 aa9.89□□□□□ -0.83
VPS53-218ENST00000575207 GAGE5Q13069 117 aa9.89□□□□□ -0.83
VPS53-218ENST00000575207 GAGE13Q4V321 117 aa9.89□□□□□ -0.83
VPS53-218ENST00000575207 CFAP126Q5VTH2 177 aa9.89□□□□□ -0.83
VPS53-218ENST00000575207 KCNIP4Q6PIL6 250 aa9.89□□□□□ -0.83
VPS53-218ENST00000575207 ENHOQ6UWT2 76 aa9.89□□□□□ -0.83
VPS53-218ENST00000575207 CLRN3Q8NCR9 226 aa9.89□□□□□ -0.83
VPS53-218ENST00000575207 CIB3Q96Q77 187 aaPredicted RBP9.89□□□□□ -0.83
VPS53-218ENST00000575207 PRELID1Q9Y255 219 aa9.89□□□□□ -0.83
VPS53-218ENST00000575207 K7EPK0 472 aa9.88□□□□□ -0.83
VPS53-218ENST00000575207 TBPP20226 339 aa9.88□□□□□ -0.83
VPS53-218ENST00000575207 INPP1P49441 399 aa9.88□□□□□ -0.83
VPS53-218ENST00000575207 Q6ZRP5 223 aa9.88□□□□□ -0.83
VPS53-218ENST00000575207 LYPD6BQ8NI32 183 aa9.88□□□□□ -0.83
VPS53-218ENST00000575207 MUC21A0A0G2JKD1 596 aa9.87□□□□□ -0.83
VPS53-218ENST00000575207 COX7A2P2O60397 106 aa9.87□□□□□ -0.83
VPS53-218ENST00000575207 SMIM18P0DKX4 95 aa9.87□□□□□ -0.83
VPS53-218ENST00000575207 ZNF266Q14584 549 aa9.87□□□□□ -0.83
VPS53-218ENST00000575207 SPANXN5Q5MJ07 72 aa9.87□□□□□ -0.83
VPS53-218ENST00000575207 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.86□□□□□ -0.83
VPS53-218ENST00000575207 TRBV7-9A0A0J9YWB2 115 aa9.86□□□□□ -0.83
VPS53-218ENST00000575207 SMIM31A0A1B0GVY4 71 aa9.86□□□□□ -0.83
VPS53-218ENST00000575207 WRBO00258 174 aa9.86□□□□□ -0.83
VPS53-218ENST00000575207 MED6O75586 246 aa9.86□□□□□ -0.83
VPS53-218ENST00000575207 SURF2Q15527 256 aaPredicted RBP9.86□□□□□ -0.83
VPS53-218ENST00000575207 DMRTA1Q5VZB9 504 aa9.86□□□□□ -0.83
VPS53-218ENST00000575207 CHAC2Q8WUX2 184 aa9.86□□□□□ -0.83
VPS53-218ENST00000575207 LINC00479Q96M42 142 aa9.86□□□□□ -0.83
VPS53-218ENST00000575207 VCXQ9H320 206 aa9.86□□□□□ -0.83
VPS53-218ENST00000575207 NAGKQ9UJ70 344 aa9.86□□□□□ -0.83
VPS53-218ENST00000575207 KCNIP3Q9Y2W7 256 aa9.86□□□□□ -0.83
VPS53-218ENST00000575207 TRBV19A0A075B6N1 114 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 LOC100506127A0A0U1RQW1 187 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 H3BP45 60 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 GOSR2O14653 212 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 GNRH2O43555 120 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 ZNF138P52744 262 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 SLC38A11Q08AI6 406 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 ZNF876PQ49A33 203 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 C10orf113Q5VZT2 155 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 CROCCP3Q8IVE0 287 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 TMEM75Q8N9X5 138 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 RAB2BQ8WUD1 216 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 SLC39A9Q9NUM3 307 aa9.85□□□□□ -0.83
VPS53-218ENST00000575207 MAJINQ3KP22 176 aa9.84□□□□□ -0.83
VPS53-218ENST00000575207 Q6AWC8 147 aa9.84□□□□□ -0.83
VPS53-218ENST00000575207 STPG4Q8N801 248 aa9.84□□□□□ -0.83
VPS53-218ENST00000575207 ATP5SQ99766 215 aa9.84□□□□□ -0.83
VPS53-218ENST00000575207 STRAPQ9Y3F4 350 aaKnown RBP9.84□□□□□ -0.83
VPS53-218ENST00000575207 hDV102S1A0JD36 115 aa9.83□□□□□ -0.84
VPS53-218ENST00000575207 AGPAT2O15120 278 aa9.83□□□□□ -0.84
VPS53-218ENST00000575207 SYNGR2O43760 224 aa9.83□□□□□ -0.84
VPS53-218ENST00000575207 NDUFB4O95168 129 aa9.83□□□□□ -0.84
VPS53-218ENST00000575207 SLPIP03973 132 aa9.83□□□□□ -0.84
VPS53-218ENST00000575207 TCRBP04435 133 aa9.83□□□□□ -0.84
VPS53-218ENST00000575207 EXOC3-AS1Q8N2X6 119 aa9.83□□□□□ -0.84
VPS53-218ENST00000575207 C20orf85Q9H1P6 137 aa9.83□□□□□ -0.84
VPS53-218ENST00000575207 MIAQ16674 131 aa9.82□□□□□ -0.84
VPS53-218ENST00000575207 C15orf54Q8N8G6 183 aa9.82□□□□□ -0.84
VPS53-218ENST00000575207 AAMDCQ9H7C9 122 aa9.82□□□□□ -0.84
VPS53-218ENST00000575207 NPVFQ9HCQ7 196 aa9.82□□□□□ -0.84
VPS53-218ENST00000575207 BLOC1S6Q9UL45 172 aa9.82□□□□□ -0.84
VPS53-218ENST00000575207 TIMM9Q9Y5J7 89 aa9.82□□□□□ -0.84
VPS53-218ENST00000575207 RAB3DO95716 219 aa9.81□□□□□ -0.84
VPS53-218ENST00000575207 AP5S1Q9NUS5 200 aa9.81□□□□□ -0.84
VPS53-218ENST00000575207 GPR132Q9UNW8 380 aa9.81□□□□□ -0.84
VPS53-218ENST00000575207 IGKV2-24A0A0C4DH68 120 aa9.8□□□□□ -0.84
VPS53-218ENST00000575207 TYMSP04818 313 aa9.8□□□□□ -0.84
VPS53-218ENST00000575207 RRAS2P62070 204 aaPredicted RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms