RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 C19orf73Q9NVV2 129 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 ZNF492Q9P255 531 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 HLA-DRB4X5D2U9 266 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 COL7A1Q02388 2944 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 DNAH7Q8WXX0 4024 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 TRAV8-1A0A0A6YYK1 113 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 PRAC2D3DTV9 90 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 K7EIL1 84 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 M0R036 132 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 PPP1R2P9O14990 202 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 APOC3P02656 99 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 MT-ND4LP03901 98 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 CD7P09564 240 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 MGST1P10620 155 aaKnown RBP4.76□□□□□ -1.65
VPS53-209ENST00000570771 ERCC8Q13216 396 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 RHEBQ15382 184 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 ADIRFQ15847 76 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 ODF3L2Q3SX64 289 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 ACTL10Q5JWF8 245 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 Q8N1Y9 231 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 C15orf54Q8N8G6 183 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 DAZAP1Q96EP5 407 aaKnown RBP4.76□□□□□ -1.65
VPS53-209ENST00000570771 IGF2BP2-AS1Q96M15 143 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 LINC00479Q96M42 142 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 VGLL1Q99990 258 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 AGPAT4-IT1Q9H0P7 198 aa4.76□□□□□ -1.65
VPS53-209ENST00000570771 AURKAIP1Q9NWT8 199 aaPredicted RBP4.76□□□□□ -1.65
VPS53-209ENST00000570771 XKRY2A2RUG3 117 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 A8MTW9 85 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 FABP5P3A8MUU1 101 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 F6UB75 175 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 H3BMM0 161 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 IGLV2-11P01706 119 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 GPX1P07203 203 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 CRISP2P16562 243 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 ADCYAP1P18509 176 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 RPL23P62829 140 aaKnown RBP4.75□□□□□ -1.65
VPS53-209ENST00000570771 FAM162BQ5T6X4 162 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 LCE5AQ5TCM9 118 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 MORN3Q6PF18 240 aaPredicted RBP4.75□□□□□ -1.65
VPS53-209ENST00000570771 COX8CQ7Z4L0 72 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 LINC01551Q86U37 167 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 OCC1Q8TAD7 63 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 SGK494Q96LW2 274 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 ASCL2Q99929 193 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 MLST8Q9BVC4 326 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 C1QTNF4Q9BXJ3 329 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 KRTAP9-8Q9BYQ0 159 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 STARD9Q9P2P6 4700 aa4.75□□□□□ -1.65
VPS53-209ENST00000570771 TRBV20OR9-2A0A075B6H5 130 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 A0A087WWC5 75 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 TRAV21A0A0B4J279 112 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 KNCNA6PVL3 124 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 GCGP01275 180 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 IGKV3-20P01619 116 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 P01737 135 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 ZNF705DP0CH99 300 aaPredicted RBP4.74□□□□□ -1.65
VPS53-209ENST00000570771 ZNF705BP0CI00 300 aaPredicted RBP4.74□□□□□ -1.65
VPS53-209ENST00000570771 CDKN1BP46527 198 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 ERVFC1-1P60608 527 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 RPL19P84098 196 aaKnown RBP4.74□□□□□ -1.65
VPS53-209ENST00000570771 TNP2Q05952 138 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 PRR27Q6MZM9 219 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 FAM231DQ6ZW35 169 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 APRG1Q8IVJ8 170 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 CLRN3Q8NCR9 226 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 Q8TAT8 98 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 ISOC2Q96AB3 205 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 ANAPC16Q96DE5 110 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 SFRP2Q96HF1 295 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 C20orf144Q9BQM9 153 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 CTDSP1Q9GZU7 261 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 TUBA4BQ9H853 241 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 OSTCQ9NRP0 149 aa4.74□□□□□ -1.65
VPS53-209ENST00000570771 DYNC2H1Q8NCM8 4307 aaKnown RBP4.73□□□□□ -1.65
VPS53-209ENST00000570771 AGRNO00468 2067 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 C7orf71A4D174 169 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 RBMY1BA6NDE4 496 aaKnown RBP4.73□□□□□ -1.65
VPS53-209ENST00000570771 RBMY1EA6NEQ0 496 aaKnown RBP4.73□□□□□ -1.65
VPS53-209ENST00000570771 PGPEP1LA6NFU8 196 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 KLLNB2CW77 178 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 H7BYZ3 331 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 GATCO43716 136 aaKnown RBP4.73□□□□□ -1.65
VPS53-209ENST00000570771 INSP01308 110 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 PFN1P07737 140 aaKnown RBP4.73□□□□□ -1.65
VPS53-209ENST00000570771 RBMY1DP0C7P1 496 aaKnown RBP4.73□□□□□ -1.65
VPS53-209ENST00000570771 APOC4P55056 127 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 RPS20P60866 119 aaKnown RBP4.73□□□□□ -1.65
VPS53-209ENST00000570771 IBA57Q5T440 356 aaKnown RBP4.73□□□□□ -1.65
VPS53-209ENST00000570771 GDF5OSQ5U4N7 250 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 TRPT1Q86TN4 253 aaKnown RBP4.73□□□□□ -1.65
VPS53-209ENST00000570771 DEFB125Q8N687 156 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 ZFAND2AQ8N6M9 145 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 NHLRC2Q8NBF2 726 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 OR10G8Q8NGN5 311 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 ZC2HC1AQ96GY0 325 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 KCNS1Q96KK3 526 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 FAM19A4Q96LR4 140 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 C8orf49Q96NF6 230 aa4.73□□□□□ -1.65
VPS53-209ENST00000570771 SRD5A3Q9H8P0 318 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms